Wall clock time and date at job start Mon Mar 30 2020 03:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46895 * 109.47094 * 2 1 4 4 C 1.46903 * 111.00150 * 202.95033 * 3 2 1 5 5 H 1.08998 * 109.47157 * 186.04347 * 4 3 2 6 6 C 1.53001 * 109.47277 * 306.05230 * 4 3 2 7 7 C 1.53002 * 109.46781 * 66.05084 * 4 3 2 8 8 C 1.50704 * 109.47380 * 65.00130 * 7 4 3 9 9 H 1.07998 * 119.99789 * 359.97438 * 8 7 4 10 10 C 1.37869 * 119.99980 * 180.02562 * 8 7 4 11 11 N 1.31516 * 120.00369 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 119.99972 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47325 * 59.99468 * 12 10 8 14 14 H 1.48494 * 109.47332 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.46832 * 299.99670 * 12 10 8 16 16 C 1.46902 * 110.99837 * 79.00125 * 3 2 1 17 17 C 1.54890 * 110.75575 * 177.40483 * 16 3 2 18 18 C 1.54272 * 104.19510 * 156.25482 * 17 16 3 19 19 C 1.53875 * 106.59683 * 336.39215 * 18 17 16 20 20 C 1.54267 * 106.60145 * 359.97438 * 19 18 17 21 21 H 1.09008 * 109.46595 * 290.89792 * 1 2 3 22 22 H 1.08995 * 109.47396 * 50.89770 * 1 2 3 23 23 H 1.08999 * 109.47176 * 170.90442 * 1 2 3 24 24 H 1.09003 * 109.46696 * 240.00764 * 2 1 3 25 25 H 1.08990 * 109.47223 * 120.00846 * 2 1 3 26 26 H 1.09003 * 109.47081 * 59.99258 * 6 4 3 27 27 H 1.08996 * 109.47190 * 179.97438 * 6 4 3 28 28 H 1.08998 * 109.46893 * 300.00035 * 6 4 3 29 29 H 1.09000 * 109.46884 * 185.00041 * 7 4 3 30 30 H 1.09005 * 109.47219 * 305.00204 * 7 4 3 31 31 H 0.96999 * 120.00082 * 180.02562 * 11 10 8 32 32 H 1.08998 * 110.81494 * 54.06694 * 16 3 2 33 33 H 1.08995 * 110.48818 * 37.58035 * 17 16 3 34 34 H 1.08997 * 110.48852 * 274.93413 * 17 16 3 35 35 H 1.08992 * 110.03528 * 217.10595 * 18 17 16 36 36 H 1.09001 * 110.02695 * 95.67476 * 18 17 16 37 37 H 1.08997 * 110.03287 * 119.28629 * 19 18 17 38 38 H 1.09004 * 110.02931 * 240.66588 * 19 18 17 39 39 H 1.09003 * 110.48558 * 142.28844 * 20 19 18 40 40 H 1.08993 * 110.48479 * 264.80441 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.3859 1.4604 -0.5348 5 1 3.7636 2.4769 -0.4246 6 6 4.2889 0.4944 0.2348 7 6 3.3754 1.0781 -2.0162 8 6 2.5861 2.1001 -2.7932 9 1 2.1365 2.9382 -2.2815 10 6 2.4371 1.9645 -4.1571 11 7 2.9841 0.9437 -4.7802 12 14 1.4593 3.2317 -5.1204 13 1 2.0865 4.5681 -4.9590 14 1 1.4491 2.8606 -6.5582 15 1 0.0655 3.2741 -4.6097 16 6 1.9485 1.9685 1.3463 17 6 2.5261 3.4056 1.3529 18 6 1.8561 4.0770 2.5696 19 6 0.5524 3.3041 2.8356 20 6 0.4753 2.1904 1.7708 21 1 -0.3633 0.3666 0.9602 22 1 -0.3634 0.6481 -0.7974 23 1 -0.3633 -1.0147 -0.1625 24 1 1.8933 -0.5137 -0.8901 25 1 1.8934 -0.5139 0.8898 26 1 3.9110 -0.5221 0.1246 27 1 5.3024 0.5500 -0.1623 28 1 4.2963 0.7667 1.2902 29 1 4.3985 1.0477 -2.3908 30 1 2.9156 0.0969 -2.1351 31 1 2.8795 0.8485 -5.7399 32 1 2.4686 1.3397 2.0689 33 1 2.2595 3.9281 0.4342 34 1 3.6085 3.3812 1.4786 35 1 1.6327 5.1198 2.3446 36 1 2.5114 4.0141 3.4384 37 1 0.5749 2.8662 3.8335 38 1 -0.3037 3.9721 2.7404 39 1 0.0613 1.2787 2.2017 40 1 -0.1244 2.5161 0.9210 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829180688.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:15 Heat of formation + Delta-G solvation = -13.711075 kcal Electronic energy + Delta-G solvation = -16829.211846 eV Core-core repulsion = 14450.192656 eV Total energy + Delta-G solvation = -2379.019190 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.04686 -35.93937 -32.89891 -31.60187 -29.34234 -28.11758 -27.19774 -26.21211 -23.13675 -21.87708 -20.30717 -19.85038 -18.15046 -16.10875 -15.79106 -15.64235 -14.69777 -14.27558 -13.81682 -13.42796 -13.00199 -12.86110 -12.38708 -12.23355 -11.79728 -11.56653 -11.30909 -11.26383 -10.98867 -10.95536 -10.69744 -10.58273 -10.47962 -10.44795 -10.19837 -10.17641 -9.93716 -9.62010 -9.08711 -8.90350 -8.20250 -7.38966 -5.84261 -3.81448 3.43325 3.46943 3.50635 4.54666 4.60377 4.85092 4.97408 5.16389 5.52361 5.62726 5.65523 5.69760 5.78568 5.84918 5.88196 5.90154 5.95528 6.04582 6.08248 6.12436 6.14087 6.25260 6.29763 6.35206 6.46437 6.50544 6.61284 6.66898 6.71845 6.82051 6.90077 7.08241 7.62824 7.78513 8.03015 8.14268 8.18654 8.64184 9.24077 9.79711 11.27839 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.025164 B = 0.008678 C = 0.008078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.421760 B = 3225.708168 C = 3465.339881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.054 3.946 3 N -0.503 5.503 4 C 0.084 3.916 5 H 0.073 0.927 6 C -0.183 4.183 7 C 0.030 3.970 8 C -0.486 4.486 9 H 0.059 0.941 10 C 0.050 3.950 11 N -0.905 5.905 12 Si 0.888 3.112 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.278 1.278 16 C 0.079 3.921 17 C -0.117 4.117 18 C -0.122 4.122 19 C -0.124 4.124 20 C -0.116 4.116 21 H 0.055 0.945 22 H 0.066 0.934 23 H 0.043 0.957 24 H 0.082 0.918 25 H 0.018 0.982 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.038 0.962 29 H 0.017 0.983 30 H 0.019 0.981 31 H 0.257 0.743 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.803 1.510 13.774 14.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.074 4.074 3 N -0.226 5.226 4 C -0.024 4.024 5 H 0.091 0.909 6 C -0.242 4.242 7 C -0.007 4.007 8 C -0.525 4.525 9 H 0.078 0.922 10 C -0.149 4.149 11 N -0.546 5.546 12 Si 0.717 3.283 13 H -0.206 1.206 14 H -0.217 1.217 15 H -0.204 1.204 16 C -0.030 4.030 17 C -0.155 4.155 18 C -0.161 4.161 19 C -0.162 4.162 20 C -0.153 4.153 21 H 0.074 0.926 22 H 0.085 0.915 23 H 0.062 0.938 24 H 0.101 0.899 25 H 0.036 0.964 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.035 0.965 30 H 0.037 0.963 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.093 1.715 13.280 13.743 hybrid contribution 0.041 0.111 -0.089 0.149 sum -3.052 1.826 13.190 13.662 Atomic orbital electron populations 1.22072 0.96086 1.00662 1.02339 1.22022 0.95418 0.89799 1.00194 1.62218 1.23341 1.17917 1.19106 1.21964 0.85111 0.97926 0.97429 0.90929 1.22536 1.01241 1.01007 0.99372 1.19217 0.96856 0.97136 0.87518 1.21120 1.30951 1.08861 0.91526 0.92241 1.24998 0.96270 0.95639 0.98008 1.69954 1.45796 1.29875 1.09003 0.86717 0.80840 0.81990 0.78735 1.20562 1.21726 1.20403 1.22610 0.95238 0.94827 0.90358 1.22421 0.98961 0.95563 0.98543 1.22088 0.96572 0.99272 0.98118 1.22132 0.97649 0.97722 0.98743 1.22630 0.97126 0.97282 0.98282 0.92639 0.91465 0.93774 0.89950 0.96385 0.93078 0.92747 0.94325 0.96524 0.96280 0.93344 0.94617 0.90075 0.92297 0.92120 0.92557 0.92593 0.92194 0.92001 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.21 37.16 0.34 -2.16 16 2 C 0.05 0.97 4.22 -3.82 -0.02 0.95 16 3 N -0.50 -9.55 4.05 -216.34 -0.88 -10.42 16 4 C 0.08 1.71 2.06 -67.71 -0.14 1.57 16 5 H 0.07 1.51 6.34 -51.93 -0.33 1.19 16 6 C -0.18 -3.23 8.57 37.16 0.32 -2.91 16 7 C 0.03 0.76 4.39 -27.88 -0.12 0.64 16 8 C -0.49 -13.65 8.84 -34.44 -0.30 -13.95 16 9 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 10 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 11 N -0.91 -27.49 13.29 55.43 0.74 -26.75 16 12 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 C 0.08 1.25 2.08 -65.70 -0.14 1.11 16 17 C -0.12 -1.77 4.86 -25.07 -0.12 -1.89 16 18 C -0.12 -1.52 6.80 -25.61 -0.17 -1.69 16 19 C -0.12 -1.49 6.80 -25.61 -0.17 -1.67 16 20 C -0.12 -1.62 4.46 -25.06 -0.11 -1.74 16 21 H 0.05 0.79 4.64 -51.92 -0.24 0.55 16 22 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.08 1.70 5.68 -51.93 -0.29 1.40 16 25 H 0.02 0.30 7.36 -51.93 -0.38 -0.08 16 26 H 0.05 0.90 6.77 -51.93 -0.35 0.55 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.04 0.61 6.94 -51.93 -0.36 0.25 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.02 0.52 6.08 -51.93 -0.32 0.20 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.04 0.57 7.00 -51.93 -0.36 0.21 16 33 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 34 H 0.06 0.87 7.77 -51.93 -0.40 0.46 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.81 6.28 -51.93 -0.33 0.49 16 40 H 0.08 1.24 7.82 -51.93 -0.41 0.83 16 LS Contribution 297.92 15.07 4.49 4.49 Total: -1.00 -29.26 297.92 -8.53 -37.79 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -7.12 Total: -1.95 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -0.74 Total: -20.38 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: -0.14 Total: -37.17 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.26 -8.53 -37.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829180688.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.077 kcal (2) G-P(sol) polarization free energy of solvation -29.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds