Wall clock time and date at job start Mon Mar 30 2020 03:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46895 * 109.47094 * 2 1 4 4 C 1.46903 * 111.00150 * 202.95033 * 3 2 1 5 5 H 1.08998 * 109.47157 * 186.04347 * 4 3 2 6 6 C 1.53001 * 109.47277 * 306.05230 * 4 3 2 7 7 C 1.53002 * 109.46781 * 66.05084 * 4 3 2 8 8 C 1.50704 * 109.47380 * 65.00130 * 7 4 3 9 9 H 1.07998 * 119.99789 * 359.97438 * 8 7 4 10 10 C 1.37869 * 119.99980 * 180.02562 * 8 7 4 11 11 N 1.31516 * 120.00369 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 119.99972 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47325 * 59.99468 * 12 10 8 14 14 H 1.48494 * 109.47332 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.46832 * 299.99670 * 12 10 8 16 16 C 1.46902 * 110.99837 * 79.00125 * 3 2 1 17 17 C 1.54890 * 110.75575 * 177.40483 * 16 3 2 18 18 C 1.54272 * 104.19510 * 156.25482 * 17 16 3 19 19 C 1.53875 * 106.59683 * 336.39215 * 18 17 16 20 20 C 1.54267 * 106.60145 * 359.97438 * 19 18 17 21 21 H 1.09008 * 109.46595 * 290.89792 * 1 2 3 22 22 H 1.08995 * 109.47396 * 50.89770 * 1 2 3 23 23 H 1.08999 * 109.47176 * 170.90442 * 1 2 3 24 24 H 1.09003 * 109.46696 * 240.00764 * 2 1 3 25 25 H 1.08990 * 109.47223 * 120.00846 * 2 1 3 26 26 H 1.09003 * 109.47081 * 59.99258 * 6 4 3 27 27 H 1.08996 * 109.47190 * 179.97438 * 6 4 3 28 28 H 1.08998 * 109.46893 * 300.00035 * 6 4 3 29 29 H 1.09000 * 109.46884 * 185.00041 * 7 4 3 30 30 H 1.09005 * 109.47219 * 305.00204 * 7 4 3 31 31 H 0.96999 * 120.00082 * 180.02562 * 11 10 8 32 32 H 1.08998 * 110.81494 * 54.06694 * 16 3 2 33 33 H 1.08995 * 110.48818 * 37.58035 * 17 16 3 34 34 H 1.08997 * 110.48852 * 274.93413 * 17 16 3 35 35 H 1.08992 * 110.03528 * 217.10595 * 18 17 16 36 36 H 1.09001 * 110.02695 * 95.67476 * 18 17 16 37 37 H 1.08997 * 110.03287 * 119.28629 * 19 18 17 38 38 H 1.09004 * 110.02931 * 240.66588 * 19 18 17 39 39 H 1.09003 * 110.48558 * 142.28844 * 20 19 18 40 40 H 1.08993 * 110.48479 * 264.80441 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.3859 1.4604 -0.5348 5 1 3.7636 2.4769 -0.4246 6 6 4.2889 0.4944 0.2348 7 6 3.3754 1.0781 -2.0162 8 6 2.5861 2.1001 -2.7932 9 1 2.1365 2.9382 -2.2815 10 6 2.4371 1.9645 -4.1571 11 7 2.9841 0.9437 -4.7802 12 14 1.4593 3.2317 -5.1204 13 1 2.0865 4.5681 -4.9590 14 1 1.4491 2.8606 -6.5582 15 1 0.0655 3.2741 -4.6097 16 6 1.9485 1.9685 1.3463 17 6 2.5261 3.4056 1.3529 18 6 1.8561 4.0770 2.5696 19 6 0.5524 3.3041 2.8356 20 6 0.4753 2.1904 1.7708 21 1 -0.3633 0.3666 0.9602 22 1 -0.3634 0.6481 -0.7974 23 1 -0.3633 -1.0147 -0.1625 24 1 1.8933 -0.5137 -0.8901 25 1 1.8934 -0.5139 0.8898 26 1 3.9110 -0.5221 0.1246 27 1 5.3024 0.5500 -0.1623 28 1 4.2963 0.7667 1.2902 29 1 4.3985 1.0477 -2.3908 30 1 2.9156 0.0969 -2.1351 31 1 2.8795 0.8485 -5.7399 32 1 2.4686 1.3397 2.0689 33 1 2.2595 3.9281 0.4342 34 1 3.6085 3.3812 1.4786 35 1 1.6327 5.1198 2.3446 36 1 2.5114 4.0141 3.4384 37 1 0.5749 2.8662 3.8335 38 1 -0.3037 3.9721 2.7404 39 1 0.0613 1.2787 2.2017 40 1 -0.1244 2.5161 0.9210 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829180688.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:15 Heat of formation + Delta-G solvation = -30.423756 kcal Electronic energy + Delta-G solvation = -16829.936563 eV Core-core repulsion = 14450.192656 eV Total energy + Delta-G solvation = -2379.743907 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.40476 -37.27801 -34.90244 -33.26306 -30.79479 -29.24271 -29.06312 -27.48119 -25.11363 -23.42933 -21.60660 -20.97001 -19.65341 -18.31281 -17.15818 -16.87709 -16.50466 -15.93628 -15.13408 -14.68368 -14.57027 -14.19939 -13.92250 -13.73016 -13.51959 -13.21957 -12.95509 -12.67331 -12.62684 -12.44787 -12.28530 -12.12821 -11.92786 -11.85019 -11.60176 -11.34190 -11.21236 -11.13954 -11.04411 -10.82925 -10.43422 -8.84742 -8.08292 -6.12439 1.41046 1.43816 1.51187 2.47922 3.13397 3.28947 3.73270 3.90757 4.04534 4.27503 4.34458 4.38963 4.49429 4.56305 4.61313 4.63004 4.75238 4.75722 4.85861 4.88137 4.97672 5.00307 5.07762 5.16450 5.19329 5.24171 5.26094 5.29611 5.38728 5.48621 5.53799 5.56045 5.60243 5.75665 5.92879 6.37359 6.56874 6.66550 7.01061 7.52842 9.03689 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.025164 B = 0.008678 C = 0.008078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.421760 B = 3225.708168 C = 3465.339881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.055 3.945 3 N -0.522 5.522 4 C 0.093 3.907 5 H 0.067 0.933 6 C -0.172 4.172 7 C 0.036 3.964 8 C -0.494 4.494 9 H 0.056 0.944 10 C -0.006 4.006 11 N -0.941 5.941 12 Si 0.954 3.046 13 H -0.270 1.270 14 H -0.288 1.288 15 H -0.272 1.272 16 C 0.076 3.924 17 C -0.119 4.119 18 C -0.117 4.117 19 C -0.119 4.119 20 C -0.113 4.113 21 H 0.079 0.921 22 H 0.039 0.961 23 H 0.058 0.942 24 H 0.048 0.952 25 H 0.038 0.962 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.063 0.937 29 H -0.012 1.012 30 H -0.004 1.004 31 H 0.258 0.742 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.731 2.344 15.915 16.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.072 4.072 3 N -0.246 5.246 4 C -0.015 4.015 5 H 0.085 0.915 6 C -0.231 4.231 7 C -0.001 4.001 8 C -0.532 4.532 9 H 0.074 0.926 10 C -0.201 4.201 11 N -0.584 5.584 12 Si 0.780 3.220 13 H -0.195 1.195 14 H -0.213 1.213 15 H -0.198 1.198 16 C -0.032 4.032 17 C -0.156 4.156 18 C -0.155 4.155 19 C -0.157 4.157 20 C -0.150 4.150 21 H 0.097 0.903 22 H 0.058 0.942 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.006 0.994 30 H 0.014 0.986 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.025 2.558 15.439 16.158 hybrid contribution 0.349 -0.170 -0.748 0.843 sum -3.676 2.389 14.690 15.330 Atomic orbital electron populations 1.22012 0.94639 1.01111 1.02606 1.21980 0.96569 0.89316 0.99377 1.62138 1.22206 1.18652 1.21587 1.21628 0.87084 0.98156 0.94634 0.91490 1.22399 1.00389 1.00031 1.00324 1.19077 0.94386 0.95546 0.91107 1.21419 1.30717 1.09055 0.92019 0.92571 1.25837 0.97425 0.97646 0.99230 1.70089 1.47290 1.31739 1.09241 0.85666 0.79443 0.79675 0.77204 1.19535 1.21332 1.19781 1.22730 0.96934 0.94979 0.88585 1.22400 0.99329 0.95203 0.98716 1.22070 0.96862 0.99327 0.97239 1.22117 0.97685 0.97021 0.98847 1.22582 0.95352 0.98754 0.98344 0.90269 0.94186 0.92294 0.93382 0.94414 0.93253 0.92738 0.91810 0.99359 0.98557 0.93352 0.93599 0.92938 0.92218 0.91558 0.90780 0.90584 0.91303 0.90696 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.61 9.21 71.98 0.66 -3.95 16 2 C 0.06 1.98 4.22 86.31 0.36 2.35 16 3 N -0.52 -19.71 4.05 -838.36 -3.40 -23.11 16 4 C 0.09 3.87 2.06 44.92 0.09 3.96 16 5 H 0.07 2.83 6.34 -2.39 -0.02 2.82 16 6 C -0.17 -5.97 8.57 71.98 0.62 -5.35 16 7 C 0.04 1.91 4.39 29.85 0.13 2.04 16 8 C -0.49 -28.49 8.84 25.60 0.23 -28.27 16 9 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 10 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 11 N -0.94 -58.72 13.29 21.44 0.28 -58.43 16 12 Si 0.95 46.26 29.54 68.60 2.03 48.29 16 13 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 14 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 15 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 16 C 0.08 2.27 2.08 46.21 0.10 2.37 16 17 C -0.12 -3.41 4.86 31.67 0.15 -3.26 16 18 C -0.12 -2.55 6.80 31.32 0.21 -2.33 16 19 C -0.12 -2.43 6.80 31.32 0.21 -2.21 16 20 C -0.11 -2.89 4.46 31.68 0.14 -2.74 16 21 H 0.08 2.09 4.64 -2.38 -0.01 2.08 16 22 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.05 2.04 5.68 -2.39 -0.01 2.03 16 25 H 0.04 1.19 7.36 -2.39 -0.02 1.17 16 26 H 0.05 1.71 6.77 -2.39 -0.02 1.69 16 27 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.06 1.88 6.94 -2.39 -0.02 1.87 16 29 H -0.01 -0.69 8.14 -2.39 -0.02 -0.70 16 30 H 0.00 -0.22 6.08 -2.38 -0.01 -0.23 16 31 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 32 H 0.05 1.31 7.00 -2.39 -0.02 1.29 16 33 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 34 H 0.06 1.67 7.77 -2.39 -0.02 1.65 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.07 1.71 6.28 -2.39 -0.01 1.70 16 40 H 0.06 1.76 7.82 -2.39 -0.02 1.74 16 Total: -1.00 -64.07 297.92 3.27 -60.80 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 0.98 Total: 9.72 kcal Atomic # 6 Polarization: -40.65 SS G_CDS: 3.37 Total: -37.27 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -3.11 Total: -81.54 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -64.07 3.27 -60.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829180688.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.381 kcal (2) G-P(sol) polarization free energy of solvation -64.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds