Wall clock time and date at job start Mon Mar 30 2020 02:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47001 * 2 1 4 4 N 1.46892 * 109.47388 * 120.00173 * 2 1 3 5 5 C 1.46904 * 111.00181 * 308.00119 * 4 2 1 6 6 H 1.09002 * 109.47079 * 326.81238 * 5 4 2 7 7 C 1.53007 * 109.46732 * 86.80902 * 5 4 2 8 8 C 1.53002 * 109.47425 * 206.80784 * 5 4 2 9 9 C 1.50697 * 109.46792 * 60.90832 * 8 5 4 10 10 H 1.08004 * 120.00505 * 355.05973 * 9 8 5 11 11 C 1.37877 * 119.99599 * 174.77546 * 9 8 5 12 12 N 1.31509 * 120.00141 * 0.27929 * 11 9 8 13 13 Si 1.86807 * 119.99746 * 180.28042 * 11 9 8 14 14 H 1.48496 * 109.47268 * 90.00296 * 13 11 9 15 15 H 1.48506 * 109.46871 * 210.00349 * 13 11 9 16 16 H 1.48505 * 109.47093 * 329.99800 * 13 11 9 17 17 C 1.46903 * 111.00198 * 71.95563 * 4 2 1 18 18 C 1.53784 * 113.61516 * 153.54039 * 17 4 2 19 19 C 1.53779 * 87.08131 * 220.02030 * 18 17 4 20 20 C 1.53778 * 113.60937 * 56.04597 * 17 4 2 21 21 H 1.08999 * 109.47046 * 307.02784 * 1 2 3 22 22 H 1.09000 * 109.47688 * 67.02940 * 1 2 3 23 23 H 1.09000 * 109.47020 * 187.03654 * 1 2 3 24 24 H 1.09000 * 109.47040 * 240.00463 * 2 1 3 25 25 H 1.08995 * 109.47012 * 184.25804 * 3 2 1 26 26 H 1.09003 * 109.47743 * 304.26168 * 3 2 1 27 27 H 1.09002 * 109.47447 * 64.26155 * 3 2 1 28 28 H 1.09004 * 109.47016 * 180.02562 * 7 5 4 29 29 H 1.08994 * 109.47235 * 300.00123 * 7 5 4 30 30 H 1.09002 * 109.47064 * 60.00327 * 7 5 4 31 31 H 1.08997 * 109.46993 * 300.91255 * 8 5 4 32 32 H 1.08998 * 109.46892 * 180.91037 * 8 5 4 33 33 H 0.97003 * 120.00097 * 179.97438 * 12 11 9 34 34 H 1.09000 * 112.84978 * 284.85205 * 17 4 2 35 35 H 1.08995 * 113.61252 * 334.57137 * 18 17 4 36 36 H 1.08997 * 113.61066 * 105.47301 * 18 17 4 37 37 H 1.09000 * 113.61658 * 270.88911 * 19 18 17 38 38 H 1.09004 * 113.61108 * 139.97990 * 19 18 17 39 39 H 1.09002 * 113.61488 * 254.52656 * 20 17 4 40 40 H 1.08992 * 113.62027 * 25.35116 * 20 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.3991 -0.1455 2.4134 6 1 1.2170 0.9208 2.2795 7 6 0.0720 -0.8608 2.6743 8 6 2.3355 -0.3574 3.6047 9 6 3.6344 0.3655 3.3574 10 1 3.8089 0.8537 2.4099 11 6 4.5976 0.4089 4.3429 12 7 4.3851 -0.1854 5.4967 13 14 6.2046 1.3118 4.0393 14 1 6.0637 2.7286 4.4610 15 1 7.2898 0.6678 4.8222 16 1 6.5378 1.2565 2.5931 17 6 1.7947 -2.1408 1.0998 18 6 2.7878 -2.9766 1.9245 19 6 2.8181 -3.9614 0.7439 20 6 2.4208 -2.7767 -0.1525 21 1 -0.3633 0.6189 0.8204 22 1 -0.3634 0.4010 -0.9461 23 1 -0.3633 -1.0199 0.1259 24 1 1.8933 -0.5138 -0.8900 25 1 3.1272 1.4435 -0.0763 26 1 1.6156 1.9780 -0.8493 27 1 1.7403 1.9339 0.9257 28 1 -0.3887 -0.4547 3.5748 29 1 -0.5951 -0.7099 1.8256 30 1 0.2541 -1.9272 2.8081 31 1 2.5305 -1.4227 3.7285 32 1 1.8681 0.0339 4.5082 33 1 5.0630 -0.1552 6.1899 34 1 0.7525 -2.4189 1.2562 35 1 3.7398 -2.4757 2.0999 36 1 2.3559 -3.3969 2.8327 37 1 2.0561 -4.7385 0.8037 38 1 3.8113 -4.3566 0.5304 39 1 1.6927 -3.0358 -0.9212 40 1 3.2716 -2.2205 -0.5458 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829181511.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:34 Heat of formation + Delta-G solvation = 25.269130 kcal Electronic energy + Delta-G solvation = -17153.951779 eV Core-core repulsion = 14776.622897 eV Total energy + Delta-G solvation = -2377.328882 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.61306 -36.25895 -33.33605 -31.71828 -28.78872 -27.96115 -26.26791 -25.03922 -23.98880 -22.68834 -20.71581 -19.23493 -17.86150 -16.30696 -15.56204 -15.44918 -14.42626 -14.29424 -13.86235 -13.41770 -12.73228 -12.67926 -12.36787 -11.92859 -11.83182 -11.68364 -11.38918 -11.22037 -11.11565 -10.87769 -10.77469 -10.54753 -10.46891 -10.45457 -10.15010 -9.88310 -9.67036 -9.32730 -9.01705 -8.83082 -8.15667 -7.33028 -5.79938 -3.76009 3.42597 3.49076 3.53676 4.60280 4.64363 5.10077 5.16462 5.30946 5.41754 5.44443 5.56939 5.58940 5.73241 5.82672 5.87345 5.99853 6.01539 6.05787 6.13237 6.20750 6.22757 6.24380 6.30446 6.40505 6.52898 6.64225 6.69394 6.77379 6.78164 6.84862 7.12972 7.19822 7.70848 7.85439 8.09187 8.18400 8.24357 8.72310 9.30833 9.84619 11.32260 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.023528 B = 0.010124 C = 0.009147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.763589 B = 2764.986895 C = 3060.364694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.075 3.925 3 C -0.140 4.140 4 N -0.492 5.492 5 C 0.086 3.914 6 H 0.066 0.934 7 C -0.200 4.200 8 C 0.030 3.970 9 C -0.480 4.480 10 H 0.061 0.939 11 C 0.049 3.951 12 N -0.905 5.905 13 Si 0.884 3.116 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.275 1.275 17 C 0.056 3.944 18 C -0.113 4.113 19 C -0.148 4.148 20 C -0.132 4.132 21 H 0.063 0.937 22 H 0.045 0.955 23 H 0.053 0.947 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.044 0.956 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.022 0.978 32 H 0.014 0.986 33 H 0.255 0.745 34 H 0.062 0.938 35 H 0.102 0.898 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.772 -3.115 -10.588 12.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.034 4.034 3 C -0.198 4.198 4 N -0.215 5.215 5 C -0.022 4.022 6 H 0.085 0.915 7 C -0.259 4.259 8 C -0.007 4.007 9 C -0.519 4.519 10 H 0.079 0.921 11 C -0.150 4.150 12 N -0.547 5.547 13 Si 0.713 3.287 14 H -0.212 1.212 15 H -0.217 1.217 16 H -0.200 1.200 17 C -0.053 4.053 18 C -0.151 4.151 19 C -0.186 4.186 20 C -0.169 4.169 21 H 0.082 0.918 22 H 0.064 0.936 23 H 0.072 0.928 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.033 0.967 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.120 0.880 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.165 -3.056 -10.392 12.464 hybrid contribution -0.002 0.348 -0.031 0.349 sum -6.167 -2.709 -10.423 12.410 Atomic orbital electron populations 1.22793 0.98904 1.01320 1.01271 1.21663 0.91628 0.95631 0.94484 1.21825 1.01827 0.95129 1.01009 1.62596 1.56735 1.01226 1.00945 1.21907 0.91468 0.97117 0.91707 0.91548 1.22999 0.99822 1.01626 1.01415 1.19195 0.93468 0.97659 0.90373 1.21190 0.99954 1.31535 0.99227 0.92083 1.24993 0.98278 0.96284 0.95437 1.69965 1.34501 1.45186 1.05040 0.86722 0.84208 0.79740 0.78041 1.21204 1.21719 1.19993 1.23135 0.96998 0.88537 0.96581 1.22921 1.01441 0.95306 0.95408 1.22785 1.00856 0.96407 0.98579 1.22975 1.00669 0.97297 0.96006 0.91838 0.93555 0.92832 0.91012 0.91979 0.93663 0.92037 0.93172 0.92409 0.92701 0.96018 0.96737 0.93536 0.92028 0.87998 0.92437 0.91238 0.91813 0.92885 0.89619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.55 7.32 37.16 0.27 -2.27 16 2 C 0.07 1.18 2.77 -67.72 -0.19 0.99 16 3 C -0.14 -2.22 9.26 37.16 0.34 -1.88 16 4 N -0.49 -9.12 3.83 -209.88 -0.80 -9.93 16 5 C 0.09 1.73 1.67 -67.71 -0.11 1.62 16 6 H 0.07 1.38 5.52 -51.93 -0.29 1.09 16 7 C -0.20 -3.50 7.53 37.16 0.28 -3.22 16 8 C 0.03 0.77 4.39 -27.88 -0.12 0.64 16 9 C -0.48 -13.32 8.77 -34.44 -0.30 -13.62 16 10 H 0.06 1.69 7.63 -52.48 -0.40 1.29 16 11 C 0.05 1.40 5.46 -17.82 -0.10 1.30 16 12 N -0.91 -27.42 13.29 55.43 0.74 -26.69 16 13 Si 0.88 22.19 29.54 -169.99 -5.02 17.17 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 16 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 17 C 0.06 0.94 1.84 -66.90 -0.12 0.82 16 18 C -0.11 -2.04 5.82 -25.92 -0.15 -2.19 16 19 C -0.15 -2.14 8.08 -25.92 -0.21 -2.35 16 20 C -0.13 -1.92 6.40 -25.92 -0.17 -2.09 16 21 H 0.06 0.92 5.92 -51.93 -0.31 0.61 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.73 5.93 -51.93 -0.31 0.43 16 24 H 0.07 1.07 6.68 -51.93 -0.35 0.73 16 25 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 1.06 6.23 -51.93 -0.32 0.73 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.89 4.06 -51.93 -0.21 0.67 16 30 H 0.05 0.96 6.22 -51.93 -0.32 0.64 16 31 H 0.02 0.57 5.91 -51.93 -0.31 0.27 16 32 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.06 1.01 5.07 -51.93 -0.26 0.75 16 35 H 0.10 2.18 8.11 -51.93 -0.42 1.76 16 36 H 0.06 1.06 7.89 -51.93 -0.41 0.65 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.32 7.95 -51.93 -0.41 0.91 16 LS Contribution 293.86 15.07 4.43 4.43 Total: -1.00 -29.07 293.86 -8.07 -37.14 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -6.84 Total: 0.12 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: -0.58 Total: -22.25 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: -0.07 Total: -36.62 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.07 -8.07 -37.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829181511.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.411 kcal (2) G-P(sol) polarization free energy of solvation -29.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds