Wall clock time and date at job start Mon Mar 30 2020 02:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47001 * 2 1 4 4 N 1.46892 * 109.47388 * 120.00173 * 2 1 3 5 5 C 1.46904 * 111.00181 * 308.00119 * 4 2 1 6 6 H 1.09002 * 109.47079 * 326.81238 * 5 4 2 7 7 C 1.53007 * 109.46732 * 86.80902 * 5 4 2 8 8 C 1.53002 * 109.47425 * 206.80784 * 5 4 2 9 9 C 1.50697 * 109.46792 * 60.90832 * 8 5 4 10 10 H 1.08004 * 120.00505 * 355.05973 * 9 8 5 11 11 C 1.37877 * 119.99599 * 174.77546 * 9 8 5 12 12 N 1.31509 * 120.00141 * 0.27929 * 11 9 8 13 13 Si 1.86807 * 119.99746 * 180.28042 * 11 9 8 14 14 H 1.48496 * 109.47268 * 90.00296 * 13 11 9 15 15 H 1.48506 * 109.46871 * 210.00349 * 13 11 9 16 16 H 1.48505 * 109.47093 * 329.99800 * 13 11 9 17 17 C 1.46903 * 111.00198 * 71.95563 * 4 2 1 18 18 C 1.53784 * 113.61516 * 153.54039 * 17 4 2 19 19 C 1.53779 * 87.08131 * 220.02030 * 18 17 4 20 20 C 1.53778 * 113.60937 * 56.04597 * 17 4 2 21 21 H 1.08999 * 109.47046 * 307.02784 * 1 2 3 22 22 H 1.09000 * 109.47688 * 67.02940 * 1 2 3 23 23 H 1.09000 * 109.47020 * 187.03654 * 1 2 3 24 24 H 1.09000 * 109.47040 * 240.00463 * 2 1 3 25 25 H 1.08995 * 109.47012 * 184.25804 * 3 2 1 26 26 H 1.09003 * 109.47743 * 304.26168 * 3 2 1 27 27 H 1.09002 * 109.47447 * 64.26155 * 3 2 1 28 28 H 1.09004 * 109.47016 * 180.02562 * 7 5 4 29 29 H 1.08994 * 109.47235 * 300.00123 * 7 5 4 30 30 H 1.09002 * 109.47064 * 60.00327 * 7 5 4 31 31 H 1.08997 * 109.46993 * 300.91255 * 8 5 4 32 32 H 1.08998 * 109.46892 * 180.91037 * 8 5 4 33 33 H 0.97003 * 120.00097 * 179.97438 * 12 11 9 34 34 H 1.09000 * 112.84978 * 284.85205 * 17 4 2 35 35 H 1.08995 * 113.61252 * 334.57137 * 18 17 4 36 36 H 1.08997 * 113.61066 * 105.47301 * 18 17 4 37 37 H 1.09000 * 113.61658 * 270.88911 * 19 18 17 38 38 H 1.09004 * 113.61108 * 139.97990 * 19 18 17 39 39 H 1.09002 * 113.61488 * 254.52656 * 20 17 4 40 40 H 1.08992 * 113.62027 * 25.35116 * 20 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.3991 -0.1455 2.4134 6 1 1.2170 0.9208 2.2795 7 6 0.0720 -0.8608 2.6743 8 6 2.3355 -0.3574 3.6047 9 6 3.6344 0.3655 3.3574 10 1 3.8089 0.8537 2.4099 11 6 4.5976 0.4089 4.3429 12 7 4.3851 -0.1854 5.4967 13 14 6.2046 1.3118 4.0393 14 1 6.0637 2.7286 4.4610 15 1 7.2898 0.6678 4.8222 16 1 6.5378 1.2565 2.5931 17 6 1.7947 -2.1408 1.0998 18 6 2.7878 -2.9766 1.9245 19 6 2.8181 -3.9614 0.7439 20 6 2.4208 -2.7767 -0.1525 21 1 -0.3633 0.6189 0.8204 22 1 -0.3634 0.4010 -0.9461 23 1 -0.3633 -1.0199 0.1259 24 1 1.8933 -0.5138 -0.8900 25 1 3.1272 1.4435 -0.0763 26 1 1.6156 1.9780 -0.8493 27 1 1.7403 1.9339 0.9257 28 1 -0.3887 -0.4547 3.5748 29 1 -0.5951 -0.7099 1.8256 30 1 0.2541 -1.9272 2.8081 31 1 2.5305 -1.4227 3.7285 32 1 1.8681 0.0339 4.5082 33 1 5.0630 -0.1552 6.1899 34 1 0.7525 -2.4189 1.2562 35 1 3.7398 -2.4757 2.0999 36 1 2.3559 -3.3969 2.8327 37 1 2.0561 -4.7385 0.8037 38 1 3.8113 -4.3566 0.5304 39 1 1.6927 -3.0358 -0.9212 40 1 3.2716 -2.2205 -0.5458 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829181511.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:34 Heat of formation + Delta-G solvation = 8.466569 kcal Electronic energy + Delta-G solvation = -17154.680392 eV Core-core repulsion = 14776.622897 eV Total energy + Delta-G solvation = -2378.057496 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.98946 -37.59428 -35.24487 -33.50157 -30.26010 -29.59347 -27.74045 -26.35078 -25.44990 -24.54961 -22.13636 -20.64169 -19.26573 -18.32829 -17.16763 -16.87249 -16.34597 -15.72750 -15.18094 -14.70528 -14.36915 -14.05889 -13.87645 -13.56448 -13.34821 -13.14156 -12.90746 -12.86806 -12.57802 -12.51956 -12.46490 -12.15049 -11.99259 -11.88054 -11.64957 -11.21715 -11.14610 -10.96108 -10.80562 -10.71943 -10.35953 -8.74102 -8.03660 -6.05897 1.40881 1.41719 1.52755 2.49998 3.22124 3.33805 3.81082 3.94232 4.06823 4.14556 4.20639 4.35399 4.38644 4.51844 4.56817 4.65404 4.73083 4.86236 4.88263 4.94776 5.01263 5.06695 5.09464 5.11797 5.14925 5.24948 5.30195 5.36497 5.44328 5.46844 5.56536 5.63118 5.73158 5.84438 6.00706 6.45475 6.69677 6.71912 7.09082 7.58543 9.08670 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.023528 B = 0.010124 C = 0.009147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.763589 B = 2764.986895 C = 3060.364694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.073 3.927 3 C -0.138 4.138 4 N -0.516 5.516 5 C 0.097 3.903 6 H 0.060 0.940 7 C -0.191 4.191 8 C 0.036 3.964 9 C -0.482 4.482 10 H 0.059 0.941 11 C -0.008 4.008 12 N -0.943 5.943 13 Si 0.949 3.051 14 H -0.278 1.278 15 H -0.290 1.290 16 H -0.267 1.267 17 C 0.055 3.945 18 C -0.127 4.127 19 C -0.132 4.132 20 C -0.118 4.118 21 H 0.054 0.946 22 H 0.070 0.930 23 H 0.059 0.941 24 H 0.087 0.913 25 H 0.042 0.958 26 H 0.075 0.925 27 H 0.041 0.959 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.051 0.949 31 H 0.002 0.998 32 H -0.021 1.021 33 H 0.255 0.745 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.040 0.960 37 H 0.093 0.907 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.619 -3.287 -13.196 15.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.035 4.035 3 C -0.195 4.195 4 N -0.239 5.239 5 C -0.011 4.011 6 H 0.078 0.922 7 C -0.249 4.249 8 C -0.002 4.002 9 C -0.521 4.521 10 H 0.078 0.922 11 C -0.203 4.203 12 N -0.586 5.586 13 Si 0.775 3.225 14 H -0.204 1.204 15 H -0.216 1.216 16 H -0.192 1.192 17 C -0.054 4.054 18 C -0.165 4.165 19 C -0.169 4.169 20 C -0.156 4.156 21 H 0.073 0.927 22 H 0.089 0.911 23 H 0.078 0.922 24 H 0.105 0.895 25 H 0.061 0.939 26 H 0.094 0.906 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.021 0.979 32 H -0.002 1.002 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.017 -3.221 -13.022 15.139 hybrid contribution 0.266 0.400 0.792 0.926 sum -6.751 -2.821 -12.230 14.252 Atomic orbital electron populations 1.22681 0.96934 1.01678 1.02329 1.21745 0.93250 0.95094 0.93385 1.21811 1.00744 0.95715 1.01274 1.62414 1.57731 1.02454 1.01281 1.21526 0.91514 0.97321 0.90728 0.92212 1.22908 0.98659 1.00910 1.02473 1.19066 0.93794 0.95767 0.91524 1.21483 1.00853 1.30881 0.98857 0.92243 1.25804 1.01836 0.97336 0.95308 1.70104 1.35654 1.46864 1.05985 0.85689 0.80015 0.78615 0.78140 1.20421 1.21588 1.19197 1.23220 0.97191 0.87409 0.97540 1.22841 0.99793 0.97336 0.96549 1.22750 1.02101 0.96320 0.95776 1.22880 1.00690 0.96370 0.95648 0.92731 0.91064 0.92249 0.89538 0.93879 0.90612 0.94033 0.93661 0.89430 0.92969 0.97923 1.00227 0.93642 0.90854 0.92384 0.94086 0.88860 0.91207 0.89873 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.26 7.32 71.98 0.53 -3.74 16 2 C 0.07 2.13 2.77 44.92 0.12 2.25 16 3 C -0.14 -4.14 9.26 71.98 0.67 -3.47 16 4 N -0.52 -18.74 3.83 -817.92 -3.13 -21.88 16 5 C 0.10 3.97 1.67 44.92 0.07 4.04 16 6 H 0.06 2.50 5.52 -2.39 -0.01 2.49 16 7 C -0.19 -6.52 7.53 71.98 0.54 -5.98 16 8 C 0.04 1.90 4.39 29.85 0.13 2.03 16 9 C -0.48 -27.59 8.77 25.60 0.22 -27.37 16 10 H 0.06 3.36 7.63 -2.91 -0.02 3.34 16 11 C -0.01 -0.46 5.46 84.66 0.46 0.00 16 12 N -0.94 -59.13 13.29 21.45 0.28 -58.85 16 13 Si 0.95 46.46 29.54 68.60 2.03 48.48 16 14 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 15 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 16 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 17 C 0.05 1.76 1.84 45.44 0.08 1.84 16 18 C -0.13 -4.66 5.82 31.12 0.18 -4.48 16 19 C -0.13 -3.53 8.08 31.12 0.25 -3.28 16 20 C -0.12 -3.11 6.40 31.12 0.20 -2.91 16 21 H 0.05 1.42 5.92 -2.39 -0.01 1.40 16 22 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.06 1.37 5.93 -2.39 -0.01 1.36 16 24 H 0.09 2.28 6.68 -2.39 -0.02 2.27 16 25 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 26 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.04 1.40 6.23 -2.39 -0.01 1.38 16 28 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.09 2.47 4.06 -2.39 -0.01 2.46 16 30 H 0.05 1.79 6.22 -2.39 -0.01 1.78 16 31 H 0.00 0.14 5.91 -2.39 -0.01 0.13 16 32 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 33 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 34 H 0.07 2.22 5.07 -2.39 -0.01 2.21 16 35 H 0.06 2.62 8.11 -2.39 -0.02 2.60 16 36 H 0.04 1.58 7.89 -2.39 -0.02 1.56 16 37 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.08 2.17 7.95 -2.39 -0.02 2.15 16 Total: -1.00 -64.77 293.86 3.64 -61.14 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.99 Total: 12.16 kcal Atomic # 6 Polarization: -44.52 SS G_CDS: 3.47 Total: -41.05 kcal Atomic # 7 Polarization: -77.87 SS G_CDS: -2.85 Total: -80.72 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.48 kcal Total: -64.77 3.64 -61.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829181511.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.602 kcal (2) G-P(sol) polarization free energy of solvation -64.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds