Wall clock time and date at job start Mon Mar 30 2020 02:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47254 * 2 1 4 4 C 1.53005 * 109.47004 * 120.00382 * 2 1 3 5 5 H 1.09002 * 109.46981 * 184.99878 * 4 2 1 6 6 C 1.52995 * 109.47229 * 305.00044 * 4 2 1 7 7 N 1.46901 * 109.47154 * 65.00156 * 4 2 1 8 8 C 1.46898 * 110.99765 * 154.06821 * 7 4 2 9 9 H 1.08991 * 109.41491 * 33.21966 * 8 7 4 10 10 C 1.52958 * 109.35262 * 153.04159 * 8 7 4 11 11 C 1.53230 * 109.40485 * 183.67217 * 10 8 7 12 12 C 1.51275 * 108.53537 * 305.36913 * 11 10 8 13 13 C 1.37881 * 120.84933 * 231.32925 * 12 11 10 14 14 N 1.31519 * 119.99544 * 180.02562 * 13 12 11 15 15 Si 1.86800 * 120.00057 * 0.02562 * 13 12 11 16 16 H 1.48501 * 109.47225 * 90.00230 * 15 13 12 17 17 H 1.48498 * 109.47057 * 210.00058 * 15 13 12 18 18 H 1.48494 * 109.47090 * 330.00094 * 15 13 12 19 19 C 1.51267 * 118.29836 * 51.34687 * 12 11 10 20 20 C 1.52957 * 109.41596 * 273.35475 * 8 7 4 21 21 H 1.09000 * 109.47251 * 299.99326 * 1 2 3 22 22 H 1.09003 * 109.47565 * 59.99906 * 1 2 3 23 23 H 1.09008 * 109.47264 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.46984 * 240.00063 * 2 1 3 25 25 H 1.08995 * 109.47076 * 179.97438 * 3 2 1 26 26 H 1.08998 * 109.47346 * 300.00673 * 3 2 1 27 27 H 1.09008 * 109.46641 * 60.00431 * 3 2 1 28 28 H 1.08996 * 109.47277 * 185.39867 * 6 4 2 29 29 H 1.09003 * 109.47008 * 305.39515 * 6 4 2 30 30 H 1.08995 * 109.47306 * 65.39231 * 6 4 2 31 31 H 1.00906 * 111.00136 * 30.11419 * 7 4 2 32 32 H 1.08998 * 109.48274 * 303.64735 * 10 8 7 33 33 H 1.08997 * 109.48874 * 63.69067 * 10 8 7 34 34 H 1.08999 * 109.62485 * 185.65689 * 11 10 8 35 35 H 1.08996 * 109.78791 * 65.17551 * 11 10 8 36 36 H 0.96998 * 119.99018 * 179.97438 * 14 13 12 37 37 H 1.08998 * 109.62392 * 188.93999 * 19 12 11 38 38 H 1.08997 * 109.78424 * 68.45918 * 19 12 11 39 39 H 1.09004 * 109.48264 * 296.34987 * 20 8 7 40 40 H 1.09005 * 109.48214 * 56.38864 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7214 1.2492 5 1 3.1263 -0.6445 1.2951 6 6 1.4299 -0.0765 2.4953 7 7 1.6513 -2.1368 1.1903 8 6 2.5759 -2.9695 1.9711 9 1 2.9327 -2.4048 2.8324 10 6 1.8449 -4.2237 2.4529 11 6 2.7806 -5.0479 3.3435 12 6 4.0544 -5.3250 2.5760 13 6 4.5475 -6.6078 2.4641 14 7 5.6568 -6.8295 1.7933 15 14 3.6401 -8.0305 3.2652 16 1 2.6547 -8.5918 2.3065 17 1 4.6129 -9.0847 3.6491 18 1 2.9313 -7.5460 4.4768 19 6 4.7735 -4.1588 1.9349 20 6 3.7654 -3.3669 1.0954 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8901 25 1 3.1299 1.4424 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6766 1.9562 0.8901 28 1 1.8656 -0.5262 3.3875 29 1 1.6376 0.9935 2.4894 30 1 0.3519 -0.2372 2.4968 31 1 1.5952 -2.4569 0.2350 32 1 0.9624 -3.9336 3.0232 33 1 1.5420 -4.8210 1.5929 34 1 2.2996 -5.9898 3.6070 35 1 3.0136 -4.4896 4.2502 36 1 6.0039 -7.7319 1.7149 37 1 5.5729 -4.5296 1.2933 38 1 5.1930 -3.5143 2.7073 39 1 3.4171 -3.9844 0.2675 40 1 4.2442 -2.4694 0.7035 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885736430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:30 Heat of formation + Delta-G solvation = -35.538960 kcal Electronic energy + Delta-G solvation = -16453.604569 eV Core-core repulsion = 14073.638850 eV Total energy + Delta-G solvation = -2379.965719 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.49096 -36.33521 -33.17685 -31.20140 -29.52802 -28.75796 -27.18843 -26.36560 -23.28624 -21.51474 -21.08763 -19.44258 -18.74484 -16.25999 -15.37215 -15.05362 -14.66065 -14.35962 -13.50850 -13.15281 -12.89624 -12.73916 -12.49662 -12.31720 -11.97521 -11.91762 -11.81559 -11.54273 -11.12934 -10.97483 -10.87848 -10.74794 -10.56501 -10.39056 -10.25347 -9.92976 -9.83340 -9.42959 -8.89007 -8.70371 -8.42816 -7.68593 -6.05939 -3.95805 3.29998 3.38334 3.40759 4.42310 4.59429 4.89647 4.95607 5.20892 5.27001 5.58211 5.58869 5.67352 5.70745 5.83268 5.88045 5.98097 6.04098 6.05923 6.08775 6.26459 6.30817 6.35864 6.40966 6.59053 6.61941 6.74137 6.84772 6.91729 7.09167 7.10005 7.18433 7.49730 7.68506 7.74665 7.77275 7.85927 8.01182 8.44566 9.01962 9.59445 11.03918 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.049421 B = 0.006398 C = 0.006076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.421985 B = 4375.394176 C = 4606.945424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 C -0.147 4.147 4 C 0.087 3.913 5 H 0.041 0.959 6 C -0.140 4.140 7 N -0.686 5.686 8 C 0.100 3.900 9 H 0.063 0.937 10 C -0.091 4.091 11 C -0.017 4.017 12 C -0.485 4.485 13 C 0.073 3.927 14 N -0.893 5.893 15 Si 0.889 3.111 16 H -0.279 1.279 17 H -0.291 1.291 18 H -0.267 1.267 19 C 0.013 3.987 20 C -0.133 4.133 21 H 0.055 0.945 22 H 0.043 0.957 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.334 0.666 32 H 0.037 0.963 33 H 0.048 0.952 34 H 0.029 0.971 35 H 0.015 0.985 36 H 0.263 0.737 37 H 0.054 0.946 38 H 0.001 0.999 39 H 0.049 0.951 40 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.885 11.893 -2.335 14.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.023 4.023 5 H 0.059 0.941 6 C -0.198 4.198 7 N -0.316 5.316 8 C -0.009 4.009 9 H 0.081 0.919 10 C -0.129 4.129 11 C -0.055 4.055 12 C -0.504 4.504 13 C -0.129 4.129 14 N -0.531 5.531 15 Si 0.717 3.283 16 H -0.205 1.205 17 H -0.217 1.217 18 H -0.192 1.192 19 C -0.025 4.025 20 C -0.172 4.172 21 H 0.074 0.926 22 H 0.062 0.938 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.152 0.848 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.047 0.953 35 H 0.033 0.967 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.019 0.981 39 H 0.068 0.932 40 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -8.224 11.811 -1.881 14.515 hybrid contribution 0.463 -0.871 -0.280 1.026 sum -7.761 10.940 -2.161 13.586 Atomic orbital electron populations 1.21799 0.94798 1.02416 1.00775 1.21281 0.96637 0.96015 0.97740 1.21875 1.00866 0.96134 1.01566 1.21482 0.97222 0.89057 0.94556 0.94097 1.21877 1.01626 0.98848 0.97400 1.60830 1.52452 1.01181 1.17122 1.21485 0.90638 0.93495 0.95302 0.91902 1.21497 0.96966 0.95201 0.99285 1.19765 0.94975 0.95607 0.95153 1.20065 1.06552 0.92171 1.31582 1.24860 0.94894 0.98212 0.94912 1.69851 1.20864 1.21311 1.41092 0.86648 0.79445 0.81851 0.80346 1.20456 1.21748 1.19204 1.19310 0.94842 0.93521 0.94833 1.22255 0.98046 0.97842 0.99087 0.92559 0.93816 0.91734 0.91663 0.92893 0.92962 0.92371 0.93082 0.93067 0.91962 0.84844 0.94444 0.93349 0.95297 0.96687 0.92717 0.92754 0.98098 0.93216 0.95765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.59 37.15 0.32 -1.23 16 2 C -0.10 -1.15 2.61 -90.62 -0.24 -1.39 16 3 C -0.15 -1.50 8.96 37.16 0.33 -1.17 16 4 C 0.09 1.23 2.18 -67.71 -0.15 1.08 16 5 H 0.04 0.64 7.22 -51.93 -0.37 0.27 16 6 C -0.14 -1.84 8.58 37.15 0.32 -1.52 16 7 N -0.69 -11.10 5.51 -99.79 -0.55 -11.66 16 8 C 0.10 1.94 2.17 -67.76 -0.15 1.79 16 9 H 0.06 1.28 7.22 -51.93 -0.38 0.91 16 10 C -0.09 -1.91 5.54 -26.63 -0.15 -2.06 16 11 C -0.02 -0.40 5.59 -27.48 -0.15 -0.56 16 12 C -0.48 -13.00 5.51 -98.92 -0.55 -13.55 16 13 C 0.07 2.04 5.46 -17.82 -0.10 1.94 16 14 N -0.89 -26.15 12.73 55.43 0.71 -25.45 16 15 Si 0.89 21.53 27.27 -169.99 -4.64 16.89 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.27 -6.28 6.46 56.52 0.37 -5.92 16 19 C 0.01 0.33 5.97 -27.49 -0.16 0.16 16 20 C -0.13 -2.86 5.17 -26.63 -0.14 -2.99 16 21 H 0.06 0.61 6.47 -51.93 -0.34 0.27 16 22 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.06 0.78 7.75 -51.92 -0.40 0.37 16 24 H 0.06 0.79 8.02 -51.92 -0.42 0.38 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.57 6.45 -51.92 -0.34 0.23 16 28 H 0.05 0.73 7.58 -51.93 -0.39 0.34 16 29 H 0.05 0.58 6.33 -51.93 -0.33 0.25 16 30 H 0.06 0.81 6.67 -51.93 -0.35 0.47 16 31 H 0.33 5.28 7.99 -39.29 -0.31 4.97 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.03 0.68 4.78 -51.93 -0.25 0.43 16 35 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.05 1.52 7.07 -51.93 -0.37 1.15 16 38 H 0.00 0.02 8.14 -51.93 -0.42 -0.41 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 LS Contribution 297.07 15.07 4.48 4.48 Total: -1.00 -27.66 297.07 -7.99 -35.65 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -7.18 Total: -0.42 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: -0.81 Total: -19.50 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.16 Total: -37.10 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.64 Total: 16.89 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.66 -7.99 -35.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885736430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.111 kcal (2) G-P(sol) polarization free energy of solvation -27.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds