Wall clock time and date at job start Mon Mar 30 2020 02:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47254 * 2 1 4 4 C 1.53005 * 109.47004 * 120.00382 * 2 1 3 5 5 H 1.09002 * 109.46981 * 184.99878 * 4 2 1 6 6 C 1.52995 * 109.47229 * 305.00044 * 4 2 1 7 7 N 1.46901 * 109.47154 * 65.00156 * 4 2 1 8 8 C 1.46898 * 110.99765 * 154.06821 * 7 4 2 9 9 H 1.08991 * 109.41491 * 33.21966 * 8 7 4 10 10 C 1.52958 * 109.35262 * 153.04159 * 8 7 4 11 11 C 1.53230 * 109.40485 * 183.67217 * 10 8 7 12 12 C 1.51275 * 108.53537 * 305.36913 * 11 10 8 13 13 C 1.37881 * 120.84933 * 231.32925 * 12 11 10 14 14 N 1.31519 * 119.99544 * 180.02562 * 13 12 11 15 15 Si 1.86800 * 120.00057 * 0.02562 * 13 12 11 16 16 H 1.48501 * 109.47225 * 90.00230 * 15 13 12 17 17 H 1.48498 * 109.47057 * 210.00058 * 15 13 12 18 18 H 1.48494 * 109.47090 * 330.00094 * 15 13 12 19 19 C 1.51267 * 118.29836 * 51.34687 * 12 11 10 20 20 C 1.52957 * 109.41596 * 273.35475 * 8 7 4 21 21 H 1.09000 * 109.47251 * 299.99326 * 1 2 3 22 22 H 1.09003 * 109.47565 * 59.99906 * 1 2 3 23 23 H 1.09008 * 109.47264 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.46984 * 240.00063 * 2 1 3 25 25 H 1.08995 * 109.47076 * 179.97438 * 3 2 1 26 26 H 1.08998 * 109.47346 * 300.00673 * 3 2 1 27 27 H 1.09008 * 109.46641 * 60.00431 * 3 2 1 28 28 H 1.08996 * 109.47277 * 185.39867 * 6 4 2 29 29 H 1.09003 * 109.47008 * 305.39515 * 6 4 2 30 30 H 1.08995 * 109.47306 * 65.39231 * 6 4 2 31 31 H 1.00906 * 111.00136 * 30.11419 * 7 4 2 32 32 H 1.08998 * 109.48274 * 303.64735 * 10 8 7 33 33 H 1.08997 * 109.48874 * 63.69067 * 10 8 7 34 34 H 1.08999 * 109.62485 * 185.65689 * 11 10 8 35 35 H 1.08996 * 109.78791 * 65.17551 * 11 10 8 36 36 H 0.96998 * 119.99018 * 179.97438 * 14 13 12 37 37 H 1.08998 * 109.62392 * 188.93999 * 19 12 11 38 38 H 1.08997 * 109.78424 * 68.45918 * 19 12 11 39 39 H 1.09004 * 109.48264 * 296.34987 * 20 8 7 40 40 H 1.09005 * 109.48214 * 56.38864 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7214 1.2492 5 1 3.1263 -0.6445 1.2951 6 6 1.4299 -0.0765 2.4953 7 7 1.6513 -2.1368 1.1903 8 6 2.5759 -2.9695 1.9711 9 1 2.9327 -2.4048 2.8324 10 6 1.8449 -4.2237 2.4529 11 6 2.7806 -5.0479 3.3435 12 6 4.0544 -5.3250 2.5760 13 6 4.5475 -6.6078 2.4641 14 7 5.6568 -6.8295 1.7933 15 14 3.6401 -8.0305 3.2652 16 1 2.6547 -8.5918 2.3065 17 1 4.6129 -9.0847 3.6491 18 1 2.9313 -7.5460 4.4768 19 6 4.7735 -4.1588 1.9349 20 6 3.7654 -3.3669 1.0954 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8901 25 1 3.1299 1.4424 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6766 1.9562 0.8901 28 1 1.8656 -0.5262 3.3875 29 1 1.6376 0.9935 2.4894 30 1 0.3519 -0.2372 2.4968 31 1 1.5952 -2.4569 0.2350 32 1 0.9624 -3.9336 3.0232 33 1 1.5420 -4.8210 1.5929 34 1 2.2996 -5.9898 3.6070 35 1 3.0136 -4.4896 4.2502 36 1 6.0039 -7.7319 1.7149 37 1 5.5729 -4.5296 1.2933 38 1 5.1930 -3.5143 2.7073 39 1 3.4171 -3.9844 0.2675 40 1 4.2442 -2.4694 0.7035 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885736430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:30 Heat of formation + Delta-G solvation = -51.385756 kcal Electronic energy + Delta-G solvation = -16454.291738 eV Core-core repulsion = 14073.638850 eV Total energy + Delta-G solvation = -2380.652887 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.85284 -37.82565 -34.87714 -32.87100 -31.37045 -30.06609 -28.27349 -27.76059 -24.57305 -23.40459 -22.79824 -21.06826 -19.92788 -18.11265 -16.60566 -16.36105 -16.30449 -15.94553 -14.97421 -14.71761 -14.47105 -14.16535 -13.91305 -13.77636 -13.49785 -13.23154 -12.94487 -12.87907 -12.67090 -12.58867 -12.53204 -12.08881 -11.85534 -11.77265 -11.68113 -11.46154 -11.31758 -11.20086 -10.74140 -10.58902 -10.54698 -9.13558 -8.17209 -6.11022 1.38245 1.40708 1.50207 2.40952 3.07886 3.34978 3.89592 4.01410 4.11852 4.29338 4.34575 4.57194 4.59447 4.66109 4.70090 4.75908 4.86762 4.92276 4.96814 5.03656 5.10076 5.10857 5.11648 5.18541 5.22299 5.30476 5.33899 5.36943 5.39792 5.56358 5.60443 5.63542 5.65202 5.77231 5.84027 6.32197 6.35522 6.64228 6.95403 7.46912 8.94061 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.049421 B = 0.006398 C = 0.006076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.421985 B = 4375.394176 C = 4606.945424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 C -0.144 4.144 4 C 0.084 3.916 5 H 0.025 0.975 6 C -0.136 4.136 7 N -0.677 5.677 8 C 0.113 3.887 9 H 0.056 0.944 10 C -0.085 4.085 11 C -0.019 4.019 12 C -0.497 4.497 13 C 0.017 3.983 14 N -0.935 5.935 15 Si 0.944 3.056 16 H -0.273 1.273 17 H -0.293 1.293 18 H -0.253 1.253 19 C 0.009 3.991 20 C -0.120 4.120 21 H 0.060 0.940 22 H 0.057 0.943 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.035 0.965 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.337 0.663 32 H 0.057 0.943 33 H 0.042 0.958 34 H 0.031 0.969 35 H 0.017 0.983 36 H 0.262 0.738 37 H 0.020 0.980 38 H -0.006 1.006 39 H 0.039 0.961 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.941 13.174 -2.171 16.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.026 4.026 5 H 0.043 0.957 6 C -0.193 4.193 7 N -0.307 5.307 8 C 0.003 3.997 9 H 0.075 0.925 10 C -0.123 4.123 11 C -0.057 4.057 12 C -0.516 4.516 13 C -0.180 4.180 14 N -0.575 5.575 15 Si 0.770 3.230 16 H -0.199 1.199 17 H -0.219 1.219 18 H -0.177 1.177 19 C -0.029 4.029 20 C -0.159 4.159 21 H 0.079 0.921 22 H 0.076 0.924 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.054 0.946 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.156 0.844 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.035 0.965 36 H 0.071 0.929 37 H 0.039 0.961 38 H 0.013 0.987 39 H 0.058 0.942 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.301 13.113 -1.714 16.763 hybrid contribution 1.150 -1.186 -0.346 1.688 sum -9.151 11.927 -2.060 15.173 Atomic orbital electron populations 1.21760 0.93918 1.01958 1.01737 1.21250 0.97279 0.96683 0.96105 1.21854 1.00612 0.95049 1.02651 1.21596 0.96509 0.87977 0.96496 0.95679 1.21848 1.01553 0.99910 0.96010 1.60799 1.50889 1.01960 1.17070 1.21212 0.90049 0.93435 0.95009 0.92549 1.21391 0.97025 0.95207 0.98723 1.19792 0.94206 0.96365 0.95361 1.20672 1.07469 0.92411 1.31061 1.25667 0.95662 1.00926 0.95784 1.69993 1.22692 1.21685 1.43175 0.85751 0.78388 0.78845 0.79998 1.19850 1.21915 1.17745 1.19286 0.95033 0.93927 0.94671 1.22085 0.97957 0.97504 0.98402 0.92116 0.92371 0.92876 0.92117 0.93334 0.91557 0.91640 0.94592 0.91049 0.91581 0.84441 0.92409 0.93938 0.95066 0.96483 0.92905 0.96121 0.98741 0.94232 0.94402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 8.59 71.98 0.62 -2.00 16 2 C -0.09 -1.99 2.61 -10.79 -0.03 -2.02 16 3 C -0.14 -2.54 8.96 71.98 0.64 -1.90 16 4 C 0.08 2.20 2.18 44.91 0.10 2.30 16 5 H 0.03 0.75 7.22 -2.39 -0.02 0.73 16 6 C -0.14 -3.24 8.58 71.98 0.62 -2.63 16 7 N -0.68 -20.65 5.51 -469.62 -2.59 -23.24 16 8 C 0.11 4.24 2.17 44.89 0.10 4.34 16 9 H 0.06 2.23 7.22 -2.39 -0.02 2.21 16 10 C -0.09 -3.41 5.54 30.66 0.17 -3.24 16 11 C -0.02 -0.89 5.59 30.11 0.17 -0.72 16 12 C -0.50 -26.81 5.51 -16.17 -0.09 -26.90 16 13 C 0.02 0.96 5.46 84.65 0.46 1.43 16 14 N -0.94 -56.29 12.73 21.45 0.27 -56.02 16 15 Si 0.94 44.14 27.27 68.60 1.87 46.01 16 16 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 17 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 18 H -0.25 -11.16 6.46 99.48 0.64 -10.52 16 19 C 0.01 0.47 5.97 30.11 0.18 0.65 16 20 C -0.12 -5.13 5.17 30.66 0.16 -4.98 16 21 H 0.06 1.11 6.47 -2.39 -0.02 1.10 16 22 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.05 1.14 7.75 -2.38 -0.02 1.12 16 24 H 0.06 1.35 8.02 -2.38 -0.02 1.33 16 25 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 1.06 6.45 -2.38 -0.02 1.05 16 28 H 0.03 0.96 7.58 -2.39 -0.02 0.94 16 29 H 0.07 1.41 6.33 -2.39 -0.02 1.39 16 30 H 0.07 1.54 6.67 -2.39 -0.02 1.52 16 31 H 0.34 10.06 7.99 -89.69 -0.72 9.34 16 32 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.03 1.41 4.78 -2.39 -0.01 1.40 16 35 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 37 H 0.02 1.18 7.07 -2.39 -0.02 1.16 16 38 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 39 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 40 H 0.04 1.49 7.53 -2.38 -0.02 1.47 16 Total: -1.00 -59.21 297.07 2.87 -56.34 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.22 Total: 12.57 kcal Atomic # 6 Polarization: -38.77 SS G_CDS: 3.10 Total: -35.67 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -2.32 Total: -79.25 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.87 Total: 46.01 kcal Total: -59.21 2.87 -56.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885736430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.958 kcal (2) G-P(sol) polarization free energy of solvation -59.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds