Wall clock time and date at job start Mon Mar 30 2020 02:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47350 * 2 1 4 4 C 1.52994 * 109.47260 * 120.00281 * 2 1 3 5 5 H 1.09004 * 109.47564 * 59.99492 * 4 2 1 6 6 C 1.53005 * 109.47118 * 299.99576 * 4 2 1 7 7 N 1.46907 * 109.47419 * 179.97438 * 4 2 1 8 8 C 1.46893 * 111.00160 * 275.57919 * 7 4 2 9 9 H 1.09003 * 109.41417 * 33.91825 * 8 7 4 10 10 C 1.52954 * 109.41588 * 153.78757 * 8 7 4 11 11 C 1.53226 * 109.40472 * 183.70566 * 10 8 7 12 12 C 1.51276 * 108.53612 * 305.36742 * 11 10 8 13 13 C 1.37880 * 120.84915 * 231.33029 * 12 11 10 14 14 N 1.31515 * 120.00076 * 359.97438 * 13 12 11 15 15 Si 1.86801 * 119.99499 * 179.97438 * 13 12 11 16 16 H 1.48494 * 109.47062 * 90.00312 * 15 13 12 17 17 H 1.48503 * 109.46781 * 209.99803 * 15 13 12 18 18 H 1.48500 * 109.47490 * 329.99837 * 15 13 12 19 19 C 1.51270 * 118.29765 * 51.34731 * 12 11 10 20 20 C 1.52962 * 109.40878 * 274.13570 * 8 7 4 21 21 H 1.09001 * 109.46831 * 300.00027 * 1 2 3 22 22 H 1.09000 * 109.47035 * 60.00082 * 1 2 3 23 23 H 1.08996 * 109.47405 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47322 * 239.99974 * 2 1 3 25 25 H 1.08997 * 109.47458 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.46985 * 299.99949 * 3 2 1 27 27 H 1.08991 * 109.47118 * 59.99992 * 3 2 1 28 28 H 1.08998 * 109.46493 * 59.85830 * 6 4 2 29 29 H 1.09005 * 109.47066 * 299.86427 * 6 4 2 30 30 H 1.09000 * 109.47318 * 179.86116 * 6 4 2 31 31 H 1.00907 * 110.99674 * 39.53451 * 7 4 2 32 32 H 1.09003 * 109.47711 * 303.68031 * 10 8 7 33 33 H 1.08998 * 109.48286 * 63.70374 * 10 8 7 34 34 H 1.08991 * 109.63116 * 65.08281 * 11 10 8 35 35 H 1.08998 * 109.62725 * 185.65595 * 11 10 8 36 36 H 0.97001 * 119.99653 * 180.02562 * 14 13 12 37 37 H 1.08997 * 109.62516 * 68.36752 * 19 12 11 38 38 H 1.08996 * 109.62269 * 188.74606 * 19 12 11 39 39 H 1.08992 * 109.48885 * 296.27433 * 20 8 7 40 40 H 1.09009 * 109.48492 * 56.31853 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6766 -1.7490 1.2492 6 6 1.5301 0.0000 2.4985 7 7 3.5091 -0.7218 1.2489 8 6 4.0350 -1.8375 0.4510 9 1 3.3681 -2.0273 -0.3901 10 6 5.4255 -1.4761 -0.0738 11 6 5.9351 -2.6006 -0.9814 12 6 5.8779 -3.9022 -0.2128 13 6 6.9802 -4.7268 -0.1356 14 7 8.0999 -4.3856 -0.7352 15 14 6.8833 -6.3285 0.8207 16 1 6.4403 -7.4193 -0.0844 17 1 8.2220 -6.6569 1.3733 18 1 5.9106 -6.1828 1.9333 19 6 4.5801 -4.2762 0.4686 20 6 4.1197 -3.0909 1.3236 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 0.4401 0.0022 2.4972 29 1 1.8955 1.0270 2.4997 30 1 1.8914 -0.5153 3.3884 31 1 3.8709 0.1606 0.9193 32 1 5.3695 -0.5475 -0.6420 33 1 6.1089 -1.3481 0.7656 34 1 5.3040 -2.6705 -1.8673 35 1 6.9639 -2.3948 -1.2768 36 1 8.8753 -4.9659 -0.6812 37 1 3.8236 -4.5012 -0.2830 38 1 4.7377 -5.1490 1.1022 39 1 4.8341 -2.9250 2.1299 40 1 3.1382 -3.3069 1.7460 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885736431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:32 Heat of formation + Delta-G solvation = -32.558298 kcal Electronic energy + Delta-G solvation = -16548.689078 eV Core-core repulsion = 14168.852610 eV Total energy + Delta-G solvation = -2379.836467 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.65326 -36.25948 -33.01863 -31.15383 -29.74608 -28.90242 -27.31067 -26.08587 -23.35889 -21.51522 -21.35750 -19.10394 -18.74453 -16.15750 -15.67549 -15.01028 -14.62626 -14.35590 -13.73548 -13.20058 -12.98906 -12.72899 -12.51224 -12.36933 -12.05123 -11.95167 -11.84764 -11.31003 -11.12408 -11.08625 -10.88328 -10.69527 -10.54908 -10.40184 -10.16793 -9.98882 -9.89231 -9.39280 -8.82948 -8.55810 -8.40370 -7.78568 -6.04396 -3.94319 3.31082 3.39210 3.40737 4.43357 4.63861 4.89038 4.93887 5.12187 5.24641 5.47069 5.57691 5.63919 5.66378 5.84573 5.86574 5.91796 5.98694 6.03348 6.06632 6.20020 6.23905 6.31047 6.35702 6.58307 6.63085 6.77244 6.87622 6.97101 7.04707 7.13208 7.19780 7.52824 7.67780 7.76102 7.80978 7.91189 8.00188 8.45809 9.03076 9.60673 11.05417 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.044292 B = 0.006810 C = 0.006394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.021583 B = 4110.368077 C = 4378.069801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C -0.148 4.148 4 C 0.087 3.913 5 H 0.074 0.926 6 C -0.140 4.140 7 N -0.687 5.687 8 C 0.100 3.900 9 H 0.031 0.969 10 C -0.108 4.108 11 C 0.011 3.989 12 C -0.483 4.483 13 C 0.074 3.926 14 N -0.893 5.893 15 Si 0.887 3.113 16 H -0.279 1.279 17 H -0.290 1.290 18 H -0.264 1.264 19 C -0.023 4.023 20 C -0.089 4.089 21 H 0.057 0.943 22 H 0.049 0.951 23 H 0.052 0.948 24 H 0.068 0.932 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.333 0.667 32 H 0.024 0.976 33 H 0.056 0.944 34 H 0.000 1.000 35 H 0.057 0.943 36 H 0.263 0.737 37 H 0.012 0.988 38 H 0.033 0.967 39 H 0.055 0.945 40 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.869 8.239 2.943 14.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C -0.206 4.206 4 C -0.023 4.023 5 H 0.092 0.908 6 C -0.198 4.198 7 N -0.318 5.318 8 C -0.008 4.008 9 H 0.049 0.951 10 C -0.147 4.147 11 C -0.026 4.026 12 C -0.502 4.502 13 C -0.128 4.128 14 N -0.531 5.531 15 Si 0.715 3.285 16 H -0.205 1.205 17 H -0.217 1.217 18 H -0.189 1.189 19 C -0.061 4.061 20 C -0.128 4.128 21 H 0.076 0.924 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.153 0.847 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.019 0.981 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.030 0.970 38 H 0.052 0.948 39 H 0.073 0.927 40 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -11.604 7.848 3.515 14.443 hybrid contribution -0.136 -0.554 -0.474 0.741 sum -11.740 7.294 3.042 14.152 Atomic orbital electron populations 1.21831 0.95333 1.01566 1.01400 1.21802 0.96162 0.96884 1.00033 1.21878 1.01077 0.96099 1.01528 1.21585 0.88762 0.98948 0.93026 0.90760 1.21853 0.99529 1.00498 0.97929 1.60824 1.05558 1.06875 1.58587 1.21427 0.95573 0.90690 0.93118 0.95087 1.21805 0.95169 0.97876 0.99807 1.19354 0.98011 0.92106 0.93179 1.20056 0.94775 1.04496 1.30864 1.24853 0.94935 0.97646 0.95403 1.69843 1.02056 1.37565 1.43639 0.86680 0.76958 0.83903 0.80935 1.20544 1.21694 1.18921 1.19849 0.96775 0.94313 0.95158 1.21516 0.98076 0.95047 0.98159 0.92424 0.93204 0.92841 0.91366 0.92547 0.93047 0.92290 0.92888 0.92786 0.92357 0.84676 0.95705 0.92503 0.98123 0.92470 0.92710 0.96952 0.94826 0.92655 0.95439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.84 37.16 0.33 -1.19 16 2 C -0.13 -1.61 2.80 -90.62 -0.25 -1.86 16 3 C -0.15 -1.67 8.57 37.16 0.32 -1.35 16 4 C 0.09 1.23 2.28 -67.71 -0.15 1.07 16 5 H 0.07 1.15 7.16 -51.93 -0.37 0.78 16 6 C -0.14 -1.70 8.82 37.16 0.33 -1.37 16 7 N -0.69 -11.37 6.06 -99.78 -0.60 -11.97 16 8 C 0.10 1.98 2.20 -67.76 -0.15 1.83 16 9 H 0.03 0.63 7.07 -51.93 -0.37 0.27 16 10 C -0.11 -2.35 5.23 -26.64 -0.14 -2.49 16 11 C 0.01 0.29 5.97 -27.48 -0.16 0.13 16 12 C -0.48 -13.02 5.51 -98.92 -0.55 -13.56 16 13 C 0.07 2.06 5.46 -17.82 -0.10 1.96 16 14 N -0.89 -26.17 12.73 55.43 0.71 -25.46 16 15 Si 0.89 21.53 27.53 -169.99 -4.68 16.85 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 18 H -0.26 -6.22 6.11 56.52 0.35 -5.88 16 19 C -0.02 -0.55 5.59 -27.48 -0.15 -0.71 16 20 C -0.09 -1.92 5.44 -26.63 -0.14 -2.06 16 21 H 0.06 0.56 6.43 -51.93 -0.33 0.22 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.98 7.39 -51.93 -0.38 0.59 16 25 H 0.06 0.67 6.26 -51.93 -0.33 0.34 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.61 6.43 -51.93 -0.33 0.27 16 28 H 0.05 0.55 6.42 -51.93 -0.33 0.22 16 29 H 0.05 0.62 6.44 -51.93 -0.33 0.28 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.33 5.20 5.84 -39.29 -0.23 4.97 16 32 H 0.02 0.48 8.05 -51.93 -0.42 0.06 16 33 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 35 H 0.06 1.59 7.07 -51.93 -0.37 1.22 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.03 0.80 4.59 -51.93 -0.24 0.57 16 39 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.03 0.54 7.44 -51.92 -0.39 0.15 16 LS Contribution 293.38 15.07 4.42 4.42 Total: -1.00 -27.87 293.38 -7.98 -35.85 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -7.00 Total: -0.09 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -0.83 Total: -19.60 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.10 Total: -37.43 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.68 Total: 16.85 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.87 -7.98 -35.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885736431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.294 kcal (2) G-P(sol) polarization free energy of solvation -27.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds