Wall clock time and date at job start Mon Mar 30 2020 02:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47350 * 2 1 4 4 C 1.52994 * 109.47260 * 120.00281 * 2 1 3 5 5 H 1.09004 * 109.47564 * 59.99492 * 4 2 1 6 6 C 1.53005 * 109.47118 * 299.99576 * 4 2 1 7 7 N 1.46907 * 109.47419 * 179.97438 * 4 2 1 8 8 C 1.46893 * 111.00160 * 275.57919 * 7 4 2 9 9 H 1.09003 * 109.41417 * 33.91825 * 8 7 4 10 10 C 1.52954 * 109.41588 * 153.78757 * 8 7 4 11 11 C 1.53226 * 109.40472 * 183.70566 * 10 8 7 12 12 C 1.51276 * 108.53612 * 305.36742 * 11 10 8 13 13 C 1.37880 * 120.84915 * 231.33029 * 12 11 10 14 14 N 1.31515 * 120.00076 * 359.97438 * 13 12 11 15 15 Si 1.86801 * 119.99499 * 179.97438 * 13 12 11 16 16 H 1.48494 * 109.47062 * 90.00312 * 15 13 12 17 17 H 1.48503 * 109.46781 * 209.99803 * 15 13 12 18 18 H 1.48500 * 109.47490 * 329.99837 * 15 13 12 19 19 C 1.51270 * 118.29765 * 51.34731 * 12 11 10 20 20 C 1.52962 * 109.40878 * 274.13570 * 8 7 4 21 21 H 1.09001 * 109.46831 * 300.00027 * 1 2 3 22 22 H 1.09000 * 109.47035 * 60.00082 * 1 2 3 23 23 H 1.08996 * 109.47405 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47322 * 239.99974 * 2 1 3 25 25 H 1.08997 * 109.47458 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.46985 * 299.99949 * 3 2 1 27 27 H 1.08991 * 109.47118 * 59.99992 * 3 2 1 28 28 H 1.08998 * 109.46493 * 59.85830 * 6 4 2 29 29 H 1.09005 * 109.47066 * 299.86427 * 6 4 2 30 30 H 1.09000 * 109.47318 * 179.86116 * 6 4 2 31 31 H 1.00907 * 110.99674 * 39.53451 * 7 4 2 32 32 H 1.09003 * 109.47711 * 303.68031 * 10 8 7 33 33 H 1.08998 * 109.48286 * 63.70374 * 10 8 7 34 34 H 1.08991 * 109.63116 * 65.08281 * 11 10 8 35 35 H 1.08998 * 109.62725 * 185.65595 * 11 10 8 36 36 H 0.97001 * 119.99653 * 180.02562 * 14 13 12 37 37 H 1.08997 * 109.62516 * 68.36752 * 19 12 11 38 38 H 1.08996 * 109.62269 * 188.74606 * 19 12 11 39 39 H 1.08992 * 109.48885 * 296.27433 * 20 8 7 40 40 H 1.09009 * 109.48492 * 56.31853 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6766 -1.7490 1.2492 6 6 1.5301 0.0000 2.4985 7 7 3.5091 -0.7218 1.2489 8 6 4.0350 -1.8375 0.4510 9 1 3.3681 -2.0273 -0.3901 10 6 5.4255 -1.4761 -0.0738 11 6 5.9351 -2.6006 -0.9814 12 6 5.8779 -3.9022 -0.2128 13 6 6.9802 -4.7268 -0.1356 14 7 8.0999 -4.3856 -0.7352 15 14 6.8833 -6.3285 0.8207 16 1 6.4403 -7.4193 -0.0844 17 1 8.2220 -6.6569 1.3733 18 1 5.9106 -6.1828 1.9333 19 6 4.5801 -4.2762 0.4686 20 6 4.1197 -3.0909 1.3236 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 0.4401 0.0022 2.4972 29 1 1.8955 1.0270 2.4997 30 1 1.8914 -0.5153 3.3884 31 1 3.8709 0.1606 0.9193 32 1 5.3695 -0.5475 -0.6420 33 1 6.1089 -1.3481 0.7656 34 1 5.3040 -2.6705 -1.8673 35 1 6.9639 -2.3948 -1.2768 36 1 8.8753 -4.9659 -0.6812 37 1 3.8236 -4.5012 -0.2830 38 1 4.7377 -5.1490 1.1022 39 1 4.8341 -2.9250 2.1299 40 1 3.1382 -3.3069 1.7460 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885736431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:32 Heat of formation + Delta-G solvation = -48.752408 kcal Electronic energy + Delta-G solvation = -16549.391307 eV Core-core repulsion = 14168.852610 eV Total energy + Delta-G solvation = -2380.538697 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.98043 -37.82412 -34.74737 -32.77003 -31.52696 -30.24739 -28.40108 -27.55453 -24.53865 -23.27411 -23.23199 -20.87048 -19.84623 -18.05920 -16.92194 -16.42229 -16.31555 -15.64122 -15.21561 -14.78783 -14.48825 -14.23129 -13.92536 -13.83301 -13.77521 -13.04065 -12.91622 -12.81388 -12.72466 -12.51262 -12.33717 -12.09063 -11.88806 -11.83201 -11.75549 -11.56968 -11.31861 -11.23418 -10.76077 -10.54875 -10.43694 -9.14553 -8.16383 -6.10173 1.38182 1.40632 1.49387 2.41205 3.07203 3.38794 3.90245 3.97312 4.12513 4.18311 4.28323 4.54392 4.56535 4.62264 4.75659 4.77515 4.83660 4.89711 4.96794 5.04747 5.06823 5.07313 5.13985 5.19270 5.22273 5.25421 5.26747 5.30304 5.32845 5.49198 5.62400 5.63666 5.64487 5.77073 5.89657 6.33764 6.37546 6.67266 6.95922 7.47401 8.94758 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.044292 B = 0.006810 C = 0.006394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.021583 B = 4110.368077 C = 4378.069801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.126 4.126 3 C -0.146 4.146 4 C 0.085 3.915 5 H 0.061 0.939 6 C -0.134 4.134 7 N -0.687 5.687 8 C 0.113 3.887 9 H 0.026 0.974 10 C -0.097 4.097 11 C 0.008 3.992 12 C -0.497 4.497 13 C 0.018 3.982 14 N -0.934 5.934 15 Si 0.941 3.059 16 H -0.274 1.274 17 H -0.292 1.292 18 H -0.250 1.250 19 C -0.024 4.024 20 C -0.084 4.084 21 H 0.071 0.929 22 H 0.058 0.942 23 H 0.050 0.950 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.340 0.660 32 H 0.046 0.954 33 H 0.041 0.959 34 H -0.004 1.004 35 H 0.025 0.975 36 H 0.262 0.738 37 H 0.016 0.984 38 H 0.034 0.966 39 H 0.041 0.959 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.073 8.967 4.059 17.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.146 4.146 3 C -0.204 4.204 4 C -0.025 4.025 5 H 0.079 0.921 6 C -0.192 4.192 7 N -0.319 5.319 8 C 0.004 3.996 9 H 0.044 0.956 10 C -0.136 4.136 11 C -0.030 4.030 12 C -0.516 4.516 13 C -0.180 4.180 14 N -0.574 5.574 15 Si 0.768 3.232 16 H -0.200 1.200 17 H -0.218 1.218 18 H -0.174 1.174 19 C -0.062 4.062 20 C -0.123 4.123 21 H 0.090 0.910 22 H 0.077 0.923 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.161 0.839 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.014 0.986 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.035 0.965 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.837 8.587 4.638 16.932 hybrid contribution 0.520 -0.722 -0.877 1.250 sum -13.317 7.864 3.760 15.916 Atomic orbital electron populations 1.21805 0.93613 1.01792 1.02560 1.21736 0.97606 0.97197 0.98081 1.21866 1.00456 0.95340 1.02699 1.21674 0.86969 0.98896 0.94966 0.92111 1.21803 1.00775 1.00436 0.96143 1.60754 1.07439 1.06164 1.57575 1.21121 0.94219 0.91331 0.92928 0.95574 1.21607 0.96026 0.97295 0.98653 1.19320 0.96229 0.93633 0.93845 1.20673 0.95926 1.04678 1.30311 1.25654 0.94832 1.00862 0.96653 1.69981 1.02835 1.38955 1.45651 0.85794 0.77073 0.80263 0.80114 1.19963 1.21824 1.17448 1.19864 0.95423 0.95492 0.95447 1.21406 0.98614 0.94758 0.97478 0.91001 0.92329 0.93120 0.93580 0.93487 0.92102 0.90942 0.90828 0.91925 0.93281 0.83883 0.93585 0.94017 0.98572 0.95667 0.92885 0.96513 0.94716 0.94008 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 8.84 71.98 0.64 -1.91 16 2 C -0.13 -2.86 2.80 -10.80 -0.03 -2.89 16 3 C -0.15 -2.88 8.57 71.98 0.62 -2.27 16 4 C 0.08 2.19 2.28 44.91 0.10 2.29 16 5 H 0.06 1.74 7.16 -2.38 -0.02 1.73 16 6 C -0.13 -2.82 8.82 71.98 0.63 -2.18 16 7 N -0.69 -21.47 6.06 -469.60 -2.84 -24.31 16 8 C 0.11 4.34 2.20 44.89 0.10 4.44 16 9 H 0.03 1.04 7.07 -2.39 -0.02 1.02 16 10 C -0.10 -4.21 5.23 30.65 0.16 -4.05 16 11 C 0.01 0.40 5.97 30.11 0.18 0.58 16 12 C -0.50 -27.00 5.51 -16.17 -0.09 -27.09 16 13 C 0.02 1.00 5.46 84.66 0.46 1.46 16 14 N -0.93 -56.30 12.73 21.45 0.27 -56.03 16 15 Si 0.94 44.28 27.53 68.60 1.89 46.17 16 16 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 17 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 18 H -0.25 -11.09 6.11 99.48 0.61 -10.48 16 19 C -0.02 -1.14 5.59 30.11 0.17 -0.97 16 20 C -0.08 -3.49 5.44 30.66 0.17 -3.32 16 21 H 0.07 1.11 6.43 -2.39 -0.02 1.09 16 22 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.05 1.25 7.39 -2.38 -0.02 1.23 16 25 H 0.05 1.01 6.26 -2.39 -0.01 0.99 16 26 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.07 1.24 6.43 -2.39 -0.02 1.22 16 28 H 0.07 1.26 6.42 -2.39 -0.02 1.24 16 29 H 0.06 1.21 6.44 -2.38 -0.02 1.20 16 30 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.34 9.94 5.84 -89.69 -0.52 9.42 16 32 H 0.05 1.76 8.05 -2.39 -0.02 1.74 16 33 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 35 H 0.02 1.44 7.07 -2.39 -0.02 1.42 16 36 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 37 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.03 1.60 4.59 -2.39 -0.01 1.59 16 39 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.05 1.80 7.44 -2.38 -0.02 1.78 16 Total: -1.00 -59.96 293.38 2.80 -57.16 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.38 Total: 12.91 kcal Atomic # 6 Polarization: -39.01 SS G_CDS: 3.11 Total: -35.90 kcal Atomic # 7 Polarization: -77.77 SS G_CDS: -2.57 Total: -80.34 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.89 Total: 46.17 kcal Total: -59.96 2.80 -57.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885736431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.408 kcal (2) G-P(sol) polarization free energy of solvation -59.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds