Wall clock time and date at job start Mon Mar 30 2020 02:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47302 * 2 1 4 4 C 1.50704 * 109.46556 * 240.00874 * 2 1 3 5 5 H 1.07999 * 120.00002 * 245.41646 * 4 2 1 6 6 C 1.37875 * 120.00332 * 65.42857 * 4 2 1 7 7 N 1.31511 * 120.00067 * 7.06069 * 6 4 2 8 8 Si 1.86805 * 120.00051 * 187.06767 * 6 4 2 9 9 H 1.48501 * 109.46871 * 94.98208 * 8 6 4 10 10 H 1.48504 * 109.46745 * 214.97796 * 8 6 4 11 11 H 1.48491 * 109.47024 * 334.97835 * 8 6 4 12 12 N 1.46894 * 109.47229 * 120.01144 * 2 1 3 13 13 C 1.46904 * 110.99518 * 262.46558 * 12 2 1 14 14 C 1.52994 * 115.55259 * 39.83061 * 13 12 2 15 15 C 1.53003 * 117.49785 * 254.11662 * 13 12 2 16 16 C 1.53003 * 117.50088 * 0.02562 * 15 13 12 17 17 C 1.53001 * 117.49577 * 145.02052 * 15 13 12 18 18 C 1.52998 * 60.00038 * 252.51459 * 15 13 12 19 19 C 1.52997 * 117.49926 * 252.50929 * 18 15 13 20 20 C 1.53007 * 117.49671 * 107.49529 * 18 15 13 21 21 H 1.08998 * 109.47400 * 184.00636 * 1 2 3 22 22 H 1.09001 * 109.46998 * 304.00459 * 1 2 3 23 23 H 1.08996 * 109.47323 * 64.00019 * 1 2 3 24 24 H 0.97000 * 120.00645 * 180.02562 * 7 6 4 25 25 H 1.00892 * 111.00437 * 26.41779 * 12 2 1 26 26 H 1.09005 * 109.46998 * 59.43053 * 14 13 12 27 27 H 1.08996 * 109.47197 * 179.43422 * 14 13 12 28 28 H 1.09003 * 109.47214 * 299.43176 * 14 13 12 29 29 H 1.09002 * 109.47020 * 70.36010 * 16 15 13 30 30 H 1.08997 * 109.47089 * 190.36555 * 16 15 13 31 31 H 1.09006 * 109.46918 * 310.36844 * 16 15 13 32 32 H 1.09003 * 109.47051 * 67.22434 * 17 15 13 33 33 H 1.09000 * 109.46748 * 187.21925 * 17 15 13 34 34 H 1.08995 * 109.47505 * 307.22438 * 17 15 13 35 35 H 1.09000 * 109.47336 * 138.08014 * 19 18 15 36 36 H 1.09003 * 109.47546 * 258.08275 * 19 18 15 37 37 H 1.09000 * 109.47190 * 18.08051 * 19 18 15 38 38 H 1.08999 * 109.46843 * 358.50982 * 20 18 15 39 39 H 1.08993 * 109.47279 * 118.51417 * 20 18 15 40 40 H 1.08998 * 109.46259 * 238.51448 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.5790 -1.6366 -1.1342 6 6 1.7938 -0.1774 -2.4797 7 7 1.2524 1.0157 -2.5933 8 14 2.2397 -1.1503 -4.0108 9 1 1.0468 -1.8938 -4.4897 10 1 2.7016 -0.2194 -5.0717 11 1 3.3252 -2.1109 -3.6882 12 7 2.0197 -0.6927 1.1992 13 6 2.3647 0.2665 2.2571 14 6 1.4104 1.4526 2.4093 15 6 3.8498 0.5146 2.5288 16 6 4.8619 -0.2548 1.6776 17 6 4.2673 1.9303 2.9317 18 6 3.0127 -0.2865 3.5280 19 6 2.6573 0.3894 4.8538 20 6 3.2519 -1.7960 3.5999 21 1 -0.3634 -1.0251 0.0718 22 1 -0.3633 0.5747 0.8519 23 1 -0.3634 0.4505 -0.9236 24 1 1.0843 1.3905 -3.4720 25 1 1.3449 -1.3668 1.5284 26 1 0.4080 1.0863 2.6312 27 1 1.7521 2.0917 3.2234 28 1 1.3911 2.0248 1.4818 29 1 4.8422 0.1264 0.6566 30 1 5.8606 -0.1251 2.0947 31 1 4.6039 -1.3139 1.6749 32 1 3.8577 2.1641 3.9145 33 1 5.3550 1.9920 2.9674 34 1 3.8867 2.6434 2.2005 35 1 1.6192 0.1723 5.1055 36 1 3.3090 0.0105 5.6411 37 1 2.7904 1.4671 4.7594 38 1 4.0073 -2.0795 2.8670 39 1 3.5971 -2.0620 4.5989 40 1 2.3216 -2.3218 3.3849 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885736626.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:38 Heat of formation + Delta-G solvation = 16.607876 kcal Electronic energy + Delta-G solvation = -16942.680518 eV Core-core repulsion = 14564.976056 eV Total energy + Delta-G solvation = -2377.704462 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.56915 -35.00066 -32.00199 -30.62391 -29.58040 -28.62461 -26.65189 -25.62830 -24.98531 -24.70178 -20.34940 -17.81945 -17.17578 -16.25476 -15.09799 -14.69270 -14.62068 -13.85261 -13.68091 -12.93167 -12.85490 -12.55472 -12.15659 -12.05025 -11.83856 -11.62740 -11.52691 -11.42786 -11.26690 -11.15317 -11.03105 -10.87108 -10.72630 -10.41620 -10.05817 -9.97736 -9.87286 -9.17622 -8.62541 -8.60900 -8.26521 -7.14445 -5.93198 -3.92637 3.35501 3.42452 3.46812 4.16769 4.49011 4.93201 5.11404 5.18694 5.39183 5.43831 5.60553 5.69063 5.87632 5.88721 6.03035 6.08282 6.17140 6.20993 6.23404 6.28904 6.33301 6.38226 6.41995 6.59435 6.62455 6.69142 6.71780 6.82410 6.87815 6.88918 7.11853 7.22688 7.49605 7.67571 7.97275 8.34306 8.66669 8.71281 9.14501 9.70829 11.15414 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.033903 B = 0.008222 C = 0.007863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.678910 B = 3404.620166 C = 3560.050909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.214 3.786 3 H 0.041 0.959 4 C -0.488 4.488 5 H 0.061 0.939 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.891 3.109 9 H -0.284 1.284 10 H -0.289 1.289 11 H -0.274 1.274 12 N -0.643 5.643 13 C 0.067 3.933 14 C -0.139 4.139 15 C -0.103 4.103 16 C -0.102 4.102 17 C -0.121 4.121 18 C -0.128 4.128 19 C -0.118 4.118 20 C -0.110 4.110 21 H 0.027 0.973 22 H 0.013 0.987 23 H 0.071 0.929 24 H 0.258 0.742 25 H 0.322 0.678 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.044 0.956 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.883 -0.358 11.963 12.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.106 3.894 3 H 0.059 0.941 4 C -0.527 4.527 5 H 0.079 0.921 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.719 3.281 9 H -0.210 1.210 10 H -0.215 1.215 11 H -0.199 1.199 12 N -0.272 5.272 13 C -0.026 4.026 14 C -0.198 4.198 15 C -0.104 4.104 16 C -0.159 4.159 17 C -0.178 4.178 18 C -0.129 4.129 19 C -0.175 4.175 20 C -0.167 4.167 21 H 0.046 0.954 22 H 0.032 0.968 23 H 0.090 0.910 24 H 0.067 0.933 25 H 0.140 0.860 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.473 -0.300 11.562 12.076 hybrid contribution -0.855 -0.130 -0.731 1.132 sum 2.618 -0.431 10.831 11.151 Atomic orbital electron populations 1.22454 1.00936 0.98409 1.00456 1.19166 0.89083 0.94861 0.86245 0.94112 1.21170 1.33833 1.07999 0.89692 0.92109 1.24935 0.95853 0.94827 0.98892 1.69952 1.45162 1.15269 1.23386 0.86597 0.78506 0.79936 0.83033 1.21016 1.21529 1.19907 1.60601 1.47816 1.14932 1.03814 1.21678 0.93279 0.94731 0.92863 1.21880 0.98357 0.97772 1.01825 1.21729 0.93339 0.95194 1.00149 1.21186 0.94810 1.00734 0.99144 1.21482 1.00508 0.94968 1.00860 1.21857 1.05280 0.95157 0.90611 1.21444 1.00593 1.00378 0.95072 1.21284 1.01989 0.92734 1.00672 0.95370 0.96773 0.91002 0.93253 0.85990 0.93049 0.93007 0.91364 0.91777 0.94533 0.91118 0.92222 0.92906 0.92413 0.92887 0.92916 0.91838 0.90974 0.93735 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 8.89 37.16 0.33 -3.52 16 2 C 0.21 5.28 1.96 -68.87 -0.14 5.14 16 3 H 0.04 1.13 6.23 -51.93 -0.32 0.81 16 4 C -0.49 -13.46 8.77 -34.44 -0.30 -13.76 16 5 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 6 C 0.06 1.54 5.21 -17.82 -0.09 1.45 16 7 N -0.90 -25.98 12.04 55.43 0.67 -25.32 16 8 Si 0.89 21.74 29.54 -169.99 -5.02 16.71 16 9 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 12 N -0.64 -13.43 5.23 -94.25 -0.49 -13.92 16 13 C 0.07 1.22 2.52 -131.60 -0.33 0.89 16 14 C -0.14 -2.43 7.08 37.15 0.26 -2.17 16 15 C -0.10 -1.73 2.70 -154.51 -0.42 -2.15 16 16 C -0.10 -1.79 8.87 37.16 0.33 -1.46 16 17 C -0.12 -1.79 8.48 37.16 0.32 -1.47 16 18 C -0.13 -1.96 2.70 -154.51 -0.42 -2.38 16 19 C -0.12 -1.51 8.50 37.16 0.32 -1.20 16 20 C -0.11 -1.60 9.18 37.16 0.34 -1.25 16 21 H 0.03 0.63 8.05 -51.93 -0.42 0.21 16 22 H 0.01 0.29 6.15 -51.93 -0.32 -0.03 16 23 H 0.07 1.89 6.72 -51.93 -0.35 1.54 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.32 6.48 7.94 -39.30 -0.31 6.17 16 26 H 0.05 0.88 7.15 -51.93 -0.37 0.50 16 27 H 0.05 0.78 5.49 -51.93 -0.29 0.49 16 28 H 0.07 1.36 6.50 -51.93 -0.34 1.02 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.04 0.55 8.07 -51.93 -0.42 0.13 16 31 H 0.07 1.26 5.36 -51.93 -0.28 0.99 16 32 H 0.06 0.78 4.94 -51.93 -0.26 0.52 16 33 H 0.05 0.71 7.96 -51.93 -0.41 0.30 16 34 H 0.06 0.90 7.95 -51.93 -0.41 0.49 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.61 8.05 -51.93 -0.42 0.19 16 37 H 0.06 0.79 4.28 -51.93 -0.22 0.57 16 38 H 0.07 1.11 5.12 -51.93 -0.27 0.84 16 39 H 0.04 0.56 7.95 -51.93 -0.41 0.15 16 40 H 0.05 0.78 7.80 -51.93 -0.41 0.38 16 LS Contribution 297.13 15.07 4.48 4.48 Total: -1.00 -28.02 297.13 -6.78 -34.81 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -6.61 Total: 5.13 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: 0.20 Total: -21.89 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.17 Total: -39.23 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.02 -6.78 -34.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885736626.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.413 kcal (2) G-P(sol) polarization free energy of solvation -28.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds