Wall clock time and date at job start Mon Mar 30 2020 02:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47302 * 2 1 4 4 C 1.50704 * 109.46556 * 240.00874 * 2 1 3 5 5 H 1.07999 * 120.00002 * 245.41646 * 4 2 1 6 6 C 1.37875 * 120.00332 * 65.42857 * 4 2 1 7 7 N 1.31511 * 120.00067 * 7.06069 * 6 4 2 8 8 Si 1.86805 * 120.00051 * 187.06767 * 6 4 2 9 9 H 1.48501 * 109.46871 * 94.98208 * 8 6 4 10 10 H 1.48504 * 109.46745 * 214.97796 * 8 6 4 11 11 H 1.48491 * 109.47024 * 334.97835 * 8 6 4 12 12 N 1.46894 * 109.47229 * 120.01144 * 2 1 3 13 13 C 1.46904 * 110.99518 * 262.46558 * 12 2 1 14 14 C 1.52994 * 115.55259 * 39.83061 * 13 12 2 15 15 C 1.53003 * 117.49785 * 254.11662 * 13 12 2 16 16 C 1.53003 * 117.50088 * 0.02562 * 15 13 12 17 17 C 1.53001 * 117.49577 * 145.02052 * 15 13 12 18 18 C 1.52998 * 60.00038 * 252.51459 * 15 13 12 19 19 C 1.52997 * 117.49926 * 252.50929 * 18 15 13 20 20 C 1.53007 * 117.49671 * 107.49529 * 18 15 13 21 21 H 1.08998 * 109.47400 * 184.00636 * 1 2 3 22 22 H 1.09001 * 109.46998 * 304.00459 * 1 2 3 23 23 H 1.08996 * 109.47323 * 64.00019 * 1 2 3 24 24 H 0.97000 * 120.00645 * 180.02562 * 7 6 4 25 25 H 1.00892 * 111.00437 * 26.41779 * 12 2 1 26 26 H 1.09005 * 109.46998 * 59.43053 * 14 13 12 27 27 H 1.08996 * 109.47197 * 179.43422 * 14 13 12 28 28 H 1.09003 * 109.47214 * 299.43176 * 14 13 12 29 29 H 1.09002 * 109.47020 * 70.36010 * 16 15 13 30 30 H 1.08997 * 109.47089 * 190.36555 * 16 15 13 31 31 H 1.09006 * 109.46918 * 310.36844 * 16 15 13 32 32 H 1.09003 * 109.47051 * 67.22434 * 17 15 13 33 33 H 1.09000 * 109.46748 * 187.21925 * 17 15 13 34 34 H 1.08995 * 109.47505 * 307.22438 * 17 15 13 35 35 H 1.09000 * 109.47336 * 138.08014 * 19 18 15 36 36 H 1.09003 * 109.47546 * 258.08275 * 19 18 15 37 37 H 1.09000 * 109.47190 * 18.08051 * 19 18 15 38 38 H 1.08999 * 109.46843 * 358.50982 * 20 18 15 39 39 H 1.08993 * 109.47279 * 118.51417 * 20 18 15 40 40 H 1.08998 * 109.46259 * 238.51448 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.5790 -1.6366 -1.1342 6 6 1.7938 -0.1774 -2.4797 7 7 1.2524 1.0157 -2.5933 8 14 2.2397 -1.1503 -4.0108 9 1 1.0468 -1.8938 -4.4897 10 1 2.7016 -0.2194 -5.0717 11 1 3.3252 -2.1109 -3.6882 12 7 2.0197 -0.6927 1.1992 13 6 2.3647 0.2665 2.2571 14 6 1.4104 1.4526 2.4093 15 6 3.8498 0.5146 2.5288 16 6 4.8619 -0.2548 1.6776 17 6 4.2673 1.9303 2.9317 18 6 3.0127 -0.2865 3.5280 19 6 2.6573 0.3894 4.8538 20 6 3.2519 -1.7960 3.5999 21 1 -0.3634 -1.0251 0.0718 22 1 -0.3633 0.5747 0.8519 23 1 -0.3634 0.4505 -0.9236 24 1 1.0843 1.3905 -3.4720 25 1 1.3449 -1.3668 1.5284 26 1 0.4080 1.0863 2.6312 27 1 1.7521 2.0917 3.2234 28 1 1.3911 2.0248 1.4818 29 1 4.8422 0.1264 0.6566 30 1 5.8606 -0.1251 2.0947 31 1 4.6039 -1.3139 1.6749 32 1 3.8577 2.1641 3.9145 33 1 5.3550 1.9920 2.9674 34 1 3.8867 2.6434 2.2005 35 1 1.6192 0.1723 5.1055 36 1 3.3090 0.0105 5.6411 37 1 2.7904 1.4671 4.7594 38 1 4.0073 -2.0795 2.8670 39 1 3.5971 -2.0620 4.5989 40 1 2.3216 -2.3218 3.3849 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885736626.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:37 Heat of formation + Delta-G solvation = 0.466317 kcal Electronic energy + Delta-G solvation = -16943.380469 eV Core-core repulsion = 14564.976056 eV Total energy + Delta-G solvation = -2378.404413 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.91921 -36.83667 -33.99726 -31.83004 -30.97331 -30.22095 -28.13871 -27.09715 -26.79750 -26.08280 -22.30622 -19.28968 -18.52565 -18.18615 -16.68009 -16.49747 -16.03297 -15.30436 -15.09953 -14.52023 -14.42057 -14.19066 -13.62852 -13.49168 -13.33338 -12.93408 -12.92512 -12.84705 -12.77845 -12.63321 -12.48774 -12.46222 -12.37496 -12.21634 -11.96940 -11.84409 -11.18642 -11.08845 -10.43323 -10.09787 -9.96152 -8.82374 -8.07134 -6.14409 1.40455 1.41489 1.52315 2.44791 2.85125 3.21705 3.48576 3.84179 3.93076 4.26639 4.33635 4.38034 4.55900 4.71397 4.76746 4.83815 4.86318 4.88755 4.93964 4.95492 4.99619 5.08178 5.09303 5.16022 5.19265 5.19761 5.24730 5.38139 5.45236 5.48151 5.55267 5.60169 5.70489 5.82518 5.90886 6.33604 6.79227 6.98346 7.00305 7.53850 8.99428 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.033903 B = 0.008222 C = 0.007863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.678910 B = 3404.620166 C = 3560.050909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.226 3.774 3 H 0.005 0.995 4 C -0.504 4.504 5 H 0.050 0.950 6 C 0.008 3.992 7 N -0.925 5.925 8 Si 0.952 3.048 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.271 1.271 12 N -0.644 5.644 13 C 0.035 3.965 14 C -0.129 4.129 15 C -0.116 4.116 16 C -0.097 4.097 17 C -0.118 4.118 18 C -0.101 4.101 19 C -0.117 4.117 20 C -0.112 4.112 21 H 0.035 0.965 22 H 0.033 0.967 23 H 0.041 0.959 24 H 0.258 0.742 25 H 0.325 0.675 26 H 0.052 0.948 27 H 0.077 0.923 28 H 0.033 0.967 29 H 0.025 0.975 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.039 0.961 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.353 -0.980 13.918 14.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.117 3.883 3 H 0.023 0.977 4 C -0.543 4.543 5 H 0.069 0.931 6 C -0.190 4.190 7 N -0.566 5.566 8 Si 0.778 3.222 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.195 1.195 12 N -0.272 5.272 13 C -0.058 4.058 14 C -0.188 4.188 15 C -0.117 4.117 16 C -0.154 4.154 17 C -0.175 4.175 18 C -0.101 4.101 19 C -0.174 4.174 20 C -0.169 4.169 21 H 0.054 0.946 22 H 0.052 0.948 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.144 0.856 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.052 0.948 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.947 -0.929 13.532 14.126 hybrid contribution -0.967 0.056 -1.293 1.615 sum 2.980 -0.873 12.239 12.627 Atomic orbital electron populations 1.22269 1.00167 0.98808 0.99676 1.18815 0.89445 0.92788 0.87204 0.97691 1.21473 1.33761 1.07751 0.91274 0.93144 1.25664 0.95928 0.95647 1.01723 1.70072 1.46082 1.16501 1.23931 0.85636 0.78400 0.78623 0.79517 1.20269 1.21256 1.19547 1.60416 1.47371 1.15553 1.03903 1.21839 0.94415 0.95210 0.94313 1.21748 0.98516 0.97543 1.00962 1.21892 0.92222 0.96693 1.00934 1.21112 0.96671 1.00259 0.97373 1.21480 1.01474 0.93090 1.01440 1.21981 1.01916 0.95684 0.90544 1.21492 1.01601 1.00515 0.93759 1.21317 1.01593 0.92062 1.01893 0.94604 0.94798 0.94021 0.93283 0.85649 0.92892 0.90427 0.94810 0.95588 0.92126 0.91766 0.89948 0.91596 0.94176 0.92090 0.90725 0.91281 0.92182 0.91088 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.19 8.89 71.98 0.64 -6.55 16 2 C 0.23 11.48 1.96 44.17 0.09 11.56 16 3 H 0.01 0.30 6.23 -2.39 -0.01 0.28 16 4 C -0.50 -28.49 8.77 25.60 0.22 -28.27 16 5 H 0.05 2.89 7.82 -2.91 -0.02 2.87 16 6 C 0.01 0.46 5.21 84.65 0.44 0.90 16 7 N -0.93 -54.96 12.04 21.45 0.26 -54.70 16 8 Si 0.95 45.21 29.54 68.60 2.03 47.24 16 9 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 10 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 11 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 12 N -0.64 -27.13 5.23 -452.10 -2.36 -29.50 16 13 C 0.03 1.23 2.52 3.53 0.01 1.24 16 14 C -0.13 -4.42 7.08 71.98 0.51 -3.91 16 15 C -0.12 -3.77 2.70 -52.18 -0.14 -3.91 16 16 C -0.10 -3.39 8.87 71.98 0.64 -2.76 16 17 C -0.12 -3.26 8.48 71.98 0.61 -2.65 16 18 C -0.10 -2.82 2.70 -52.18 -0.14 -2.96 16 19 C -0.12 -2.51 8.50 71.98 0.61 -1.90 16 20 C -0.11 -2.96 9.18 71.98 0.66 -2.30 16 21 H 0.03 1.61 8.05 -2.39 -0.02 1.59 16 22 H 0.03 1.44 6.15 -2.39 -0.01 1.43 16 23 H 0.04 2.23 6.72 -2.39 -0.02 2.22 16 24 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 25 H 0.33 13.02 7.94 -89.70 -0.71 12.31 16 26 H 0.05 1.75 7.15 -2.38 -0.02 1.73 16 27 H 0.08 2.20 5.49 -2.39 -0.01 2.18 16 28 H 0.03 1.37 6.50 -2.39 -0.02 1.35 16 29 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 1.77 8.07 -2.39 -0.02 1.75 16 31 H 0.06 2.29 5.36 -2.38 -0.01 2.28 16 32 H 0.08 1.87 4.94 -2.39 -0.01 1.86 16 33 H 0.07 1.63 7.96 -2.39 -0.02 1.61 16 34 H 0.04 1.24 7.95 -2.39 -0.02 1.22 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 1.33 8.05 -2.39 -0.02 1.31 16 37 H 0.07 1.41 4.28 -2.39 -0.01 1.40 16 38 H 0.06 1.75 5.12 -2.39 -0.01 1.74 16 39 H 0.07 1.51 7.95 -2.39 -0.02 1.49 16 40 H 0.05 1.38 7.80 -2.39 -0.02 1.36 16 Total: -1.00 -61.39 297.13 4.38 -57.01 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.30 Total: 21.46 kcal Atomic # 6 Polarization: -45.66 SS G_CDS: 4.15 Total: -41.51 kcal Atomic # 7 Polarization: -82.10 SS G_CDS: -2.10 Total: -84.20 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -61.39 4.38 -57.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885736626.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.479 kcal (2) G-P(sol) polarization free energy of solvation -61.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds