Wall clock time and date at job start Mon Mar 30 2020 03:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86798 * 120.00407 * 2 1 4 4 H 1.48496 * 109.46991 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47149 * 300.00402 * 3 2 1 6 6 H 1.48507 * 109.47015 * 59.99968 * 3 2 1 7 7 C 1.39940 * 119.99396 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99313 * 162.54833 * 7 2 1 9 9 C 1.41432 * 119.99982 * 342.55540 * 7 2 1 10 10 C 1.40769 * 120.17781 * 154.98355 * 9 7 2 11 11 C 1.37838 * 119.97850 * 179.97438 * 10 9 7 12 12 Cl 1.73602 * 119.81805 * 179.97438 * 11 10 9 13 13 C 1.38505 * 120.36432 * 359.97434 * 11 10 9 14 14 C 1.39675 * 120.36821 * 0.04682 * 13 11 10 15 Xx 1.56995 * 119.99581 * 179.97438 * 14 13 11 16 15 O 1.42002 * 119.99872 * 179.97438 * 15 14 13 17 16 O 1.41998 * 120.00377 * 359.97280 * 15 14 13 18 17 C 1.38852 * 120.00468 * 359.95156 * 14 13 11 19 18 H 0.97001 * 119.99692 * 359.97438 * 1 2 3 20 19 H 1.08001 * 120.01207 * 359.69421 * 10 9 7 21 20 H 1.08000 * 119.82071 * 180.02562 * 13 11 10 22 21 H 0.96706 * 114.00085 * 179.97438 * 16 15 14 23 22 H 0.96701 * 114.00553 * 179.97438 * 17 15 14 24 23 H 1.08003 * 120.17161 * 180.02562 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7024 1.3462 0.0006 5 1 1.8837 2.3964 -1.2125 6 1 1.8837 2.3964 1.2126 7 6 2.0079 -1.2120 -0.0005 8 1 3.0506 -1.2334 -0.2811 9 6 1.3494 -2.4088 0.3661 10 6 1.8193 -3.6485 -0.1070 11 6 1.1747 -4.8124 0.2534 12 17 1.7574 -6.3390 -0.3330 13 6 0.0647 -4.7706 1.0807 14 6 -0.4145 -3.5487 1.5583 15 8 -2.1606 -2.2692 2.9811 16 8 -2.3259 -4.7200 2.8564 17 6 0.2231 -2.3669 1.2050 18 1 -0.4850 0.8401 0.0004 19 1 2.6819 -3.6874 -0.7557 20 1 -0.4334 -5.6880 1.3578 21 1 -2.9391 -2.3471 3.5496 22 1 -3.0903 -4.5965 3.4357 23 1 -0.1449 -1.4205 1.5731 There are 35 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 35 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306241526.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:23 Heat of formation + Delta-G solvation = 116.281768 kcal Electronic energy + Delta-G solvation = -11595.015355 eV Core-core repulsion = 9135.861603 eV Total energy + Delta-G solvation = -2459.153752 eV No. of doubly occupied orbitals = 35 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 215.026 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.90331 -36.49572 -35.35471 -31.44869 -29.81932 -28.80513 -28.34068 -27.17289 -22.32090 -21.47417 -18.82838 -16.88036 -15.94154 -15.05100 -14.83957 -14.02788 -13.45827 -12.91459 -12.82267 -12.33784 -12.14414 -11.47112 -11.37452 -11.22592 -11.14011 -10.94293 -10.81606 -10.57067 -8.91158 -8.62379 -8.34624 -6.95745 -6.88747 -6.54398 -5.57303 -3.55642 0.14813 1.44069 1.72780 2.02088 2.24935 2.28916 2.38125 2.71596 3.02325 4.16674 4.95106 5.24302 5.31795 5.42936 5.47763 5.79090 6.06263 6.23533 6.38466 6.48417 6.73437 7.06495 7.36491 8.08502 10.19230 10.32848 Molecular weight = 215.03amu Principal moments of inertia in cm(-1) A = 0.022754 B = 0.010750 C = 0.007459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.280356 B = 2604.004392 C = 3753.137025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.038 4.038 3 Si 0.958 3.042 4 H -0.240 1.240 5 H -0.250 1.250 6 H -0.248 1.248 7 C -0.101 4.101 8 H 0.142 0.858 9 C -0.013 4.013 10 C -0.129 4.129 11 C -0.025 4.025 12 Cl -0.070 7.070 13 C -0.100 4.100 14 C 0.215 3.785 15 O -0.875 6.875 16 O -0.884 6.884 17 C -0.071 4.071 18 H 0.333 0.667 19 H 0.141 0.859 20 H 0.154 0.846 21 H 0.268 0.732 22 H 0.269 0.731 23 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.045 5.810 -10.105 19.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.231 5.231 2 C -0.263 4.263 3 Si 0.775 3.225 4 H -0.163 1.163 5 H -0.174 1.174 6 H -0.171 1.171 7 C -0.120 4.120 8 H 0.160 0.840 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.051 4.051 12 Cl -0.042 7.042 13 C -0.119 4.119 14 C 0.193 3.807 15 O -0.693 6.693 16 O -0.702 6.702 17 C -0.089 4.089 18 H 0.148 0.852 19 H 0.159 0.841 20 H 0.171 0.829 21 H 0.098 0.902 22 H 0.098 0.902 23 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 16.047 5.689 -11.000 20.270 hybrid contribution -1.407 0.336 1.047 1.786 sum 14.639 6.025 -9.953 18.699 Atomic orbital electron populations 1.69795 1.08316 1.35763 1.09269 1.27238 0.96440 1.05199 0.97403 0.85344 0.80275 0.75578 0.81347 1.16281 1.17400 1.17098 1.22301 0.98790 0.90262 1.00666 0.84034 1.17832 0.94535 0.92765 0.96483 1.21354 1.01321 0.89717 1.02330 1.20519 0.96887 0.86943 1.00801 1.98344 1.87860 1.30504 1.87462 1.21501 0.94021 1.01159 0.95236 1.30364 0.78315 0.88795 0.83245 1.93537 1.44804 1.61334 1.69581 1.93514 1.45071 1.62166 1.69472 1.22285 0.90551 1.00909 0.95144 0.85221 0.84139 0.82866 0.90249 0.90177 0.81895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 57. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.60 -10.07 10.97 55.55 0.61 -9.46 14 2 C -0.04 -0.52 5.14 -17.34 -0.09 -0.61 14 3 Si 0.96 9.35 29.59 -169.99 -5.03 4.32 14 4 H -0.24 -2.10 7.11 56.52 0.40 -1.70 14 5 H -0.25 -2.43 7.11 56.52 0.40 -2.03 14 6 H -0.25 -2.71 7.11 56.52 0.40 -2.31 14 7 C -0.10 -1.37 9.05 -37.73 -0.34 -1.71 14 8 H 0.14 1.28 7.90 -52.49 -0.41 0.86 14 9 C -0.01 -0.23 5.57 -106.87 -0.59 -0.82 14 10 C -0.13 -2.04 9.56 -38.77 -0.37 -2.41 14 11 C -0.02 -0.45 6.30 -39.63 -0.25 -0.70 14 12 Cl -0.07 -1.07 28.94 -51.86 -1.50 -2.57 14 13 C -0.10 -2.34 9.53 -38.95 -0.37 -2.71 14 14 C 0.22 5.97 9.78 -38.82 -0.38 5.59 14 15 O -0.88 -33.43 17.23 -57.73 -0.99 -34.42 14 16 O -0.88 -33.93 17.23 -57.73 -0.99 -34.92 14 17 C -0.07 -1.66 8.39 -38.50 -0.32 -1.98 14 18 H 0.33 4.78 8.30 -40.82 -0.34 4.44 14 19 H 0.14 1.66 8.06 -52.49 -0.42 1.23 14 20 H 0.15 3.78 7.75 -52.49 -0.41 3.37 14 21 H 0.27 9.82 8.90 45.56 0.41 10.23 14 22 H 0.27 9.88 8.90 45.56 0.41 10.28 14 23 H 0.16 4.12 5.88 -52.48 -0.31 3.81 14 LS Contribution 244.31 15.07 3.68 3.68 Total: -1.00 -43.69 244.31 -6.83 -50.52 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 0.12 Total: 28.20 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -2.72 Total: -5.35 kcal Atomic # 7 Polarization: -10.07 SS G_CDS: 0.61 Total: -9.46 kcal Atomic # 8 Polarization: -67.35 SS G_CDS: -1.99 Total: -69.34 kcal Atomic # 14 Polarization: 9.35 SS G_CDS: -5.03 Total: 4.32 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.50 Total: -2.57 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -43.69 -6.83 -50.52 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306241526.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.802 kcal (2) G-P(sol) polarization free energy of solvation -43.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds