Wall clock time and date at job start Mon Mar 30 2020 03:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86798 * 120.00407 * 2 1 4 4 H 1.48496 * 109.46991 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47149 * 300.00402 * 3 2 1 6 6 H 1.48507 * 109.47015 * 59.99968 * 3 2 1 7 7 C 1.39940 * 119.99396 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99313 * 162.54833 * 7 2 1 9 9 C 1.41432 * 119.99982 * 342.55540 * 7 2 1 10 10 C 1.40769 * 120.17781 * 154.98355 * 9 7 2 11 11 C 1.37838 * 119.97850 * 179.97438 * 10 9 7 12 12 Cl 1.73602 * 119.81805 * 179.97438 * 11 10 9 13 13 C 1.38505 * 120.36432 * 359.97434 * 11 10 9 14 14 C 1.39675 * 120.36821 * 0.04682 * 13 11 10 15 Xx 1.56995 * 119.99581 * 179.97438 * 14 13 11 16 15 O 1.42002 * 119.99872 * 179.97438 * 15 14 13 17 16 O 1.41998 * 120.00377 * 359.97280 * 15 14 13 18 17 C 1.38852 * 120.00468 * 359.95156 * 14 13 11 19 18 H 0.97001 * 119.99692 * 359.97438 * 1 2 3 20 19 H 1.08001 * 120.01207 * 359.69421 * 10 9 7 21 20 H 1.08000 * 119.82071 * 180.02562 * 13 11 10 22 21 H 0.96706 * 114.00085 * 179.97438 * 16 15 14 23 22 H 0.96701 * 114.00553 * 179.97438 * 17 15 14 24 23 H 1.08003 * 120.17161 * 180.02562 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7024 1.3462 0.0006 5 1 1.8837 2.3964 -1.2125 6 1 1.8837 2.3964 1.2126 7 6 2.0079 -1.2120 -0.0005 8 1 3.0506 -1.2334 -0.2811 9 6 1.3494 -2.4088 0.3661 10 6 1.8193 -3.6485 -0.1070 11 6 1.1747 -4.8124 0.2534 12 17 1.7574 -6.3390 -0.3330 13 6 0.0647 -4.7706 1.0807 14 6 -0.4145 -3.5487 1.5583 15 8 -2.1606 -2.2692 2.9811 16 8 -2.3259 -4.7200 2.8564 17 6 0.2231 -2.3669 1.2050 18 1 -0.4850 0.8401 0.0004 19 1 2.6819 -3.6874 -0.7557 20 1 -0.4334 -5.6880 1.3578 21 1 -2.9391 -2.3471 3.5496 22 1 -3.0903 -4.5965 3.4357 23 1 -0.1449 -1.4205 1.5731 There are 35 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 35 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306241526.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:23 Heat of formation + Delta-G solvation = 71.374220 kcal Electronic energy + Delta-G solvation = -11596.962692 eV Core-core repulsion = 9135.861603 eV Total energy + Delta-G solvation = -2461.101090 eV No. of doubly occupied orbitals = 35 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 215.026 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.85284 -38.02262 -36.92813 -33.24173 -31.89249 -31.11736 -30.62479 -28.82819 -24.15745 -23.41204 -20.30893 -18.32784 -17.59504 -16.88323 -16.54488 -15.39664 -15.02867 -14.26574 -14.20131 -14.15135 -13.56889 -13.45755 -13.37740 -13.24615 -12.80506 -12.29204 -12.01901 -11.75411 -10.79022 -10.31366 -9.98056 -9.26230 -9.25878 -9.18657 -8.41872 -5.01153 -2.08959 -0.36266 -0.32563 0.72247 1.08721 1.19222 1.63648 1.83778 2.00508 2.26362 3.19058 3.40825 3.50499 3.62761 3.75366 3.91516 4.29432 4.48357 4.67712 4.93711 5.04799 5.15534 5.18120 6.81312 7.60971 7.72098 Molecular weight = 215.03amu Principal moments of inertia in cm(-1) A = 0.022754 B = 0.010750 C = 0.007459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.280356 B = 2604.004392 C = 3753.137025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.640 5.640 2 C -0.071 4.071 3 Si 1.031 2.969 4 H -0.188 1.188 5 H -0.249 1.249 6 H -0.281 1.281 7 C -0.024 4.024 8 H 0.237 0.763 9 C -0.005 4.005 10 C -0.054 4.054 11 C 0.003 3.997 12 Cl -0.008 7.008 13 C -0.136 4.136 14 C 0.296 3.704 15 O -1.073 7.073 16 O -1.082 7.082 17 C -0.094 4.094 18 H 0.345 0.655 19 H 0.235 0.765 20 H 0.140 0.860 21 H 0.233 0.767 22 H 0.234 0.766 23 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.083 7.741 -17.484 32.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.272 5.272 2 C -0.292 4.292 3 Si 0.842 3.158 4 H -0.108 1.108 5 H -0.172 1.172 6 H -0.206 1.206 7 C -0.042 4.042 8 H 0.253 0.747 9 C -0.008 4.008 10 C -0.072 4.072 11 C -0.024 4.024 12 Cl 0.022 6.978 13 C -0.155 4.155 14 C 0.285 3.715 15 O -0.894 6.894 16 O -0.903 6.903 17 C -0.112 4.112 18 H 0.161 0.839 19 H 0.251 0.749 20 H 0.158 0.842 21 H 0.059 0.941 22 H 0.061 0.939 23 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 27.199 7.575 -18.490 33.750 hybrid contribution -3.608 0.092 2.360 4.313 sum 23.591 7.667 -16.130 29.589 Atomic orbital electron populations 1.69858 1.11156 1.38056 1.08107 1.28708 0.96276 1.09214 0.95029 0.84401 0.81431 0.70167 0.79760 1.10794 1.17249 1.20590 1.23675 1.01777 0.86774 0.91942 0.74675 1.18094 0.90490 0.96745 0.95492 1.22354 1.00538 0.86232 0.98034 1.20197 0.93242 0.90990 0.97959 1.98405 1.86185 1.27249 1.86006 1.21370 0.97664 0.97791 0.98642 1.28094 0.66017 0.95044 0.82328 1.93435 1.42759 1.83968 1.69228 1.93420 1.44444 1.84082 1.68371 1.22541 0.92780 0.97791 0.98055 0.83939 0.74905 0.84211 0.94066 0.93901 0.83299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.64 -19.03 10.97 21.83 0.24 -18.79 14 2 C -0.07 -1.31 5.14 85.25 0.44 -0.88 14 3 Si 1.03 10.46 29.59 68.60 2.03 12.49 14 4 H -0.19 -0.63 7.11 99.48 0.71 0.08 14 5 H -0.25 -2.68 7.11 99.48 0.71 -1.98 14 6 H -0.28 -4.58 7.11 99.48 0.71 -3.87 14 7 C -0.02 -0.34 9.05 23.47 0.21 -0.13 14 8 H 0.24 -0.39 7.90 -2.91 -0.02 -0.42 14 9 C 0.00 -0.12 5.57 -21.32 -0.12 -0.24 14 10 C -0.05 -1.01 9.56 22.79 0.22 -0.79 14 11 C 0.00 0.09 6.30 22.24 0.14 0.23 14 12 Cl -0.01 -0.17 28.94 -2.72 -0.08 -0.25 14 13 C -0.14 -6.25 9.53 22.68 0.22 -6.03 14 14 C 0.30 17.39 9.78 22.76 0.22 17.61 14 15 O -1.07 -100.51 17.23 -127.47 -2.20 -102.70 14 16 O -1.08 -102.13 17.23 -127.47 -2.20 -104.33 14 17 C -0.09 -4.22 8.39 22.97 0.19 -4.03 14 18 H 0.35 9.17 8.30 -92.71 -0.77 8.40 14 19 H 0.23 0.96 8.06 -2.91 -0.02 0.94 14 20 H 0.14 7.32 7.75 -2.91 -0.02 7.30 14 21 H 0.23 22.09 8.90 -74.05 -0.66 21.43 14 22 H 0.23 22.33 8.90 -74.06 -0.66 21.67 14 23 H 0.15 7.74 5.88 -2.91 -0.02 7.72 14 Total: -1.00 -145.83 244.31 -0.73 -146.56 By element: Atomic # 1 Polarization: 61.32 SS G_CDS: -0.05 Total: 61.27 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 1.52 Total: 5.75 kcal Atomic # 7 Polarization: -19.03 SS G_CDS: 0.24 Total: -18.79 kcal Atomic # 8 Polarization: -202.64 SS G_CDS: -4.39 Total: -207.03 kcal Atomic # 14 Polarization: 10.46 SS G_CDS: 2.03 Total: 12.49 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -0.08 Total: -0.25 kcal Total: -145.83 -0.73 -146.56 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306241526.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.933 kcal (2) G-P(sol) polarization free energy of solvation -145.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -146.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds