Wall clock time and date at job start Mon Mar 30 2020 02:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47031 * 2 1 4 4 H 1.09010 * 109.46881 * 182.49983 * 3 2 1 5 5 C 1.50699 * 109.47098 * 302.49702 * 3 2 1 6 6 H 1.07997 * 119.99363 * 120.00529 * 5 3 2 7 7 C 1.37870 * 120.00153 * 299.99812 * 5 3 2 8 8 N 1.31517 * 119.99907 * 179.97438 * 7 5 3 9 9 Si 1.86797 * 120.00282 * 0.02562 * 7 5 3 10 10 H 1.48507 * 109.47213 * 89.99799 * 9 7 5 11 11 H 1.48501 * 109.47406 * 209.99657 * 9 7 5 12 12 H 1.48496 * 109.47181 * 329.99804 * 9 7 5 13 13 S 1.80999 * 109.47058 * 62.50217 * 3 2 1 14 14 C 1.76203 * 100.00150 * 69.42651 * 13 3 2 15 15 N 1.31269 * 125.80060 * 5.03728 * 14 13 3 16 16 C 1.34360 * 109.30078 * 179.83457 * 15 14 13 17 17 C 1.34388 * 108.34844 * 0.43133 * 16 15 14 18 18 N 1.36109 * 125.80056 * 185.34535 * 14 13 3 19 19 C 1.46506 * 126.50336 * 0.02562 * 18 14 13 20 20 H 1.08991 * 109.47146 * 57.36271 * 1 2 3 21 21 H 1.09000 * 109.47058 * 297.36065 * 1 2 3 22 22 H 1.09010 * 109.46849 * 177.36216 * 1 2 3 23 23 H 1.08998 * 109.47264 * 120.00558 * 2 1 3 24 24 H 1.09004 * 109.46819 * 240.00102 * 2 1 3 25 25 H 0.97002 * 120.00216 * 179.97438 * 8 7 5 26 26 H 1.08001 * 125.82321 * 180.19750 * 16 15 14 27 27 H 1.07999 * 126.51931 * 179.72269 * 17 16 15 28 28 H 1.08997 * 109.46822 * 89.99624 * 19 18 14 29 29 H 1.08998 * 109.46397 * 209.99694 * 19 18 14 30 30 H 1.08996 * 109.46831 * 329.99701 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1292 1.4428 -0.0448 5 6 1.4877 2.1705 -1.1983 6 1 0.8718 3.0469 -1.0610 7 6 1.7690 1.7179 -2.4699 8 7 1.2866 2.3530 -3.5156 9 14 2.8339 0.2017 -2.7074 10 1 1.9734 -1.0083 -2.7353 11 1 3.5739 0.3125 -3.9901 12 1 3.8011 0.0955 -1.5856 13 16 1.4982 2.2739 1.5137 14 6 2.4852 1.4234 2.7000 15 7 3.4100 0.5314 2.4316 16 6 3.9568 0.0991 3.5802 17 6 3.3519 0.7306 4.6007 18 7 2.4140 1.5754 4.0507 19 6 1.5105 2.4680 4.7809 20 1 -0.3633 0.5542 -0.8653 21 1 -0.3633 0.4723 0.9127 22 1 -0.3633 -1.0267 -0.0473 23 1 1.8934 -0.5139 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.4847 2.0347 -4.4103 26 1 4.7450 -0.6340 3.6686 27 1 3.5615 0.6001 5.6521 28 1 0.5846 1.9402 5.0093 29 1 1.9857 2.7861 5.7088 30 1 1.2890 3.3416 4.1679 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036679165.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:59 Heat of formation + Delta-G solvation = 60.203396 kcal Electronic energy + Delta-G solvation = -13696.718003 eV Core-core repulsion = 11426.564755 eV Total energy + Delta-G solvation = -2270.153247 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.38614 -35.06554 -33.64932 -31.77722 -29.24477 -27.45951 -26.78070 -23.52144 -21.27531 -21.08668 -20.40199 -17.55107 -16.32120 -15.62730 -15.36423 -14.60548 -14.06588 -13.71418 -13.45304 -13.21081 -12.96851 -12.74327 -12.55163 -12.26266 -11.22010 -10.82571 -10.69837 -10.41182 -10.27619 -9.79719 -9.64518 -9.39524 -9.13325 -9.00425 -8.85715 -8.60704 -6.70301 -6.17573 -4.20277 2.02522 2.23696 3.11638 3.28353 3.38086 3.38987 3.44265 3.46934 4.36176 4.79757 5.05251 5.15492 5.16876 5.41693 5.53729 5.87033 6.05708 6.21323 6.27920 6.41824 6.79467 6.88198 6.98745 7.00847 7.06051 7.20190 7.34923 7.52640 8.28328 8.31075 8.79111 9.39643 10.93592 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.040051 B = 0.009290 C = 0.008482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.942872 B = 3013.172496 C = 3300.243090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 C 0.065 3.935 4 H 0.062 0.938 5 C -0.510 4.510 6 H 0.083 0.917 7 C 0.088 3.912 8 N -0.890 5.890 9 Si 0.880 3.120 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.259 1.259 13 S -0.042 6.042 14 C 0.208 3.792 15 N -0.490 5.490 16 C -0.022 4.022 17 C -0.070 4.070 18 N -0.459 5.459 19 C 0.076 3.924 20 H 0.073 0.927 21 H 0.052 0.948 22 H 0.030 0.970 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.268 0.732 26 H 0.165 0.835 27 H 0.170 0.830 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.973 -2.461 15.029 15.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.159 4.159 3 C -0.064 4.064 4 H 0.080 0.920 5 C -0.549 4.549 6 H 0.101 0.899 7 C -0.117 4.117 8 N -0.527 5.527 9 Si 0.709 3.291 10 H -0.201 1.201 11 H -0.222 1.222 12 H -0.184 1.184 13 S 0.190 5.810 14 C -0.162 4.162 15 N -0.212 5.212 16 C -0.172 4.172 17 C -0.205 4.205 18 N -0.145 5.145 19 C -0.067 4.067 20 H 0.092 0.908 21 H 0.071 0.929 22 H 0.049 0.951 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.183 0.817 27 H 0.187 0.813 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.281 -1.719 14.282 14.388 hybrid contribution 1.314 -1.613 0.564 2.156 sum 1.596 -3.332 14.846 15.299 Atomic orbital electron populations 1.21744 0.95713 0.99328 1.03075 1.21952 0.96834 0.97093 1.00066 1.21392 1.00050 0.94107 0.90824 0.91997 1.20335 1.33597 1.13562 0.87424 0.89866 1.24750 0.95016 0.96655 0.95277 1.69847 1.44328 1.40090 0.98426 0.86918 0.81372 0.83355 0.77413 1.20121 1.22181 1.18369 1.85299 1.49111 1.47235 0.99323 1.25862 1.02332 1.02272 0.85730 1.70895 1.09868 1.12451 1.27985 1.22272 1.02997 1.03581 0.88330 1.22619 0.97912 1.00174 0.99753 1.45521 1.29991 1.33173 1.05852 1.21985 0.93339 0.94065 0.97278 0.90776 0.92915 0.95104 0.92870 0.93081 0.92188 0.81727 0.81266 0.90642 0.89926 0.89222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.43 37.16 0.35 -2.65 16 2 C -0.12 -2.78 5.04 -26.73 -0.13 -2.92 16 3 C 0.07 1.60 1.54 -27.89 -0.04 1.56 16 4 H 0.06 1.63 7.03 -51.91 -0.36 1.26 16 5 C -0.51 -14.03 7.73 -34.44 -0.27 -14.29 16 6 H 0.08 2.46 7.95 -52.49 -0.42 2.04 16 7 C 0.09 2.49 5.45 -17.82 -0.10 2.39 16 8 N -0.89 -26.48 13.96 55.43 0.77 -25.70 16 9 Si 0.88 22.04 24.35 -169.99 -4.14 17.90 16 10 H -0.27 -6.70 6.89 56.52 0.39 -6.31 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.26 -6.46 6.53 56.52 0.37 -6.09 16 13 S -0.04 -0.88 19.67 -107.50 -2.11 -2.99 16 14 C 0.21 4.07 7.58 -88.75 -0.67 3.39 16 15 N -0.49 -10.13 9.24 -13.45 -0.12 -10.25 16 16 C -0.02 -0.36 11.84 -17.80 -0.21 -0.57 16 17 C -0.07 -0.98 11.60 -16.28 -0.19 -1.17 16 18 N -0.46 -7.11 3.20 -124.33 -0.40 -7.51 16 19 C 0.08 0.82 11.01 59.85 0.66 1.48 16 20 H 0.07 1.72 7.04 -51.93 -0.37 1.36 16 21 H 0.05 1.05 7.12 -51.93 -0.37 0.68 16 22 H 0.03 0.58 8.14 -51.92 -0.42 0.15 16 23 H 0.05 1.20 6.53 -51.93 -0.34 0.86 16 24 H 0.05 1.23 3.33 -51.93 -0.17 1.06 16 25 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.17 2.20 8.06 -52.49 -0.42 1.78 16 27 H 0.17 1.64 8.06 -52.49 -0.42 1.21 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.99 7.73 -51.93 -0.40 0.59 16 LS Contribution 257.76 15.07 3.88 3.88 Total: -1.00 -31.63 257.76 -6.45 -38.08 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -3.72 Total: -0.65 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -0.60 Total: -12.77 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.25 Total: -43.46 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.14 Total: 17.90 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -2.11 Total: -2.99 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.63 -6.45 -38.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036679165.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.284 kcal (2) G-P(sol) polarization free energy of solvation -31.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds