Wall clock time and date at job start Mon Mar 30 2020 02:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47031 * 2 1 4 4 H 1.09010 * 109.46881 * 182.49983 * 3 2 1 5 5 C 1.50699 * 109.47098 * 302.49702 * 3 2 1 6 6 H 1.07997 * 119.99363 * 120.00529 * 5 3 2 7 7 C 1.37870 * 120.00153 * 299.99812 * 5 3 2 8 8 N 1.31517 * 119.99907 * 179.97438 * 7 5 3 9 9 Si 1.86797 * 120.00282 * 0.02562 * 7 5 3 10 10 H 1.48507 * 109.47213 * 89.99799 * 9 7 5 11 11 H 1.48501 * 109.47406 * 209.99657 * 9 7 5 12 12 H 1.48496 * 109.47181 * 329.99804 * 9 7 5 13 13 S 1.80999 * 109.47058 * 62.50217 * 3 2 1 14 14 C 1.76203 * 100.00150 * 69.42651 * 13 3 2 15 15 N 1.31269 * 125.80060 * 5.03728 * 14 13 3 16 16 C 1.34360 * 109.30078 * 179.83457 * 15 14 13 17 17 C 1.34388 * 108.34844 * 0.43133 * 16 15 14 18 18 N 1.36109 * 125.80056 * 185.34535 * 14 13 3 19 19 C 1.46506 * 126.50336 * 0.02562 * 18 14 13 20 20 H 1.08991 * 109.47146 * 57.36271 * 1 2 3 21 21 H 1.09000 * 109.47058 * 297.36065 * 1 2 3 22 22 H 1.09010 * 109.46849 * 177.36216 * 1 2 3 23 23 H 1.08998 * 109.47264 * 120.00558 * 2 1 3 24 24 H 1.09004 * 109.46819 * 240.00102 * 2 1 3 25 25 H 0.97002 * 120.00216 * 179.97438 * 8 7 5 26 26 H 1.08001 * 125.82321 * 180.19750 * 16 15 14 27 27 H 1.07999 * 126.51931 * 179.72269 * 17 16 15 28 28 H 1.08997 * 109.46822 * 89.99624 * 19 18 14 29 29 H 1.08998 * 109.46397 * 209.99694 * 19 18 14 30 30 H 1.08996 * 109.46831 * 329.99701 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1292 1.4428 -0.0448 5 6 1.4877 2.1705 -1.1983 6 1 0.8718 3.0469 -1.0610 7 6 1.7690 1.7179 -2.4699 8 7 1.2866 2.3530 -3.5156 9 14 2.8339 0.2017 -2.7074 10 1 1.9734 -1.0083 -2.7353 11 1 3.5739 0.3125 -3.9901 12 1 3.8011 0.0955 -1.5856 13 16 1.4982 2.2739 1.5137 14 6 2.4852 1.4234 2.7000 15 7 3.4100 0.5314 2.4316 16 6 3.9568 0.0991 3.5802 17 6 3.3519 0.7306 4.6007 18 7 2.4140 1.5754 4.0507 19 6 1.5105 2.4680 4.7809 20 1 -0.3633 0.5542 -0.8653 21 1 -0.3633 0.4723 0.9127 22 1 -0.3633 -1.0267 -0.0473 23 1 1.8934 -0.5139 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.4847 2.0347 -4.4103 26 1 4.7450 -0.6340 3.6686 27 1 3.5615 0.6001 5.6521 28 1 0.5846 1.9402 5.0093 29 1 1.9857 2.7861 5.7088 30 1 1.2890 3.3416 4.1679 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036679165.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:58 Heat of formation + Delta-G solvation = 40.111624 kcal Electronic energy + Delta-G solvation = -13697.589247 eV Core-core repulsion = 11426.564755 eV Total energy + Delta-G solvation = -2271.024492 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.63301 -36.99304 -34.84189 -33.87502 -30.48801 -29.41306 -27.79224 -25.49734 -22.70991 -22.53592 -21.97905 -18.95906 -18.27390 -17.25563 -16.61357 -16.27047 -15.58533 -15.35540 -15.10333 -14.92620 -14.37747 -14.10575 -13.80470 -13.45034 -13.03242 -12.71696 -12.56913 -12.35088 -12.10523 -11.71009 -11.24158 -11.00301 -10.88281 -10.70808 -10.55456 -10.18992 -8.37609 -8.22081 -6.42945 0.53227 1.01036 1.27435 1.34142 1.44588 1.54434 2.12633 2.14431 2.27052 2.97727 3.94871 4.00167 4.23797 4.37758 4.39674 4.43343 4.49291 4.66797 4.71813 4.95158 5.08885 5.12195 5.19474 5.28005 5.43342 5.63263 5.80253 6.08176 6.08484 6.56846 7.04071 7.19933 8.77489 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.040051 B = 0.009290 C = 0.008482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.942872 B = 3013.172496 C = 3300.243090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.114 4.114 3 C 0.063 3.937 4 H 0.038 0.962 5 C -0.506 4.506 6 H 0.051 0.949 7 C 0.042 3.958 8 N -0.931 5.931 9 Si 0.933 3.067 10 H -0.261 1.261 11 H -0.291 1.291 12 H -0.260 1.260 13 S -0.034 6.034 14 C 0.170 3.830 15 N -0.530 5.530 16 C -0.055 4.055 17 C -0.034 4.034 18 N -0.452 5.452 19 C 0.066 3.934 20 H 0.047 0.953 21 H 0.063 0.937 22 H 0.056 0.944 23 H 0.059 0.941 24 H 0.040 0.960 25 H 0.271 0.729 26 H 0.188 0.812 27 H 0.223 0.777 28 H 0.091 0.909 29 H 0.121 0.879 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.383 -3.667 17.955 18.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.154 4.154 3 C -0.067 4.067 4 H 0.056 0.944 5 C -0.545 4.545 6 H 0.069 0.931 7 C -0.159 4.159 8 N -0.570 5.570 9 Si 0.760 3.240 10 H -0.187 1.187 11 H -0.218 1.218 12 H -0.185 1.185 13 S 0.198 5.802 14 C -0.200 4.200 15 N -0.253 5.253 16 C -0.205 4.205 17 C -0.170 4.170 18 N -0.138 5.138 19 C -0.075 4.075 20 H 0.066 0.934 21 H 0.082 0.918 22 H 0.075 0.925 23 H 0.078 0.922 24 H 0.058 0.942 25 H 0.081 0.919 26 H 0.205 0.795 27 H 0.239 0.761 28 H 0.110 0.890 29 H 0.140 0.860 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.670 -2.911 17.225 17.482 hybrid contribution 1.218 -1.187 -0.129 1.706 sum 1.888 -4.098 17.097 17.682 Atomic orbital electron populations 1.21662 0.94376 1.00677 1.02412 1.21870 0.97930 0.95827 0.99730 1.21085 0.98454 0.95190 0.91989 0.94382 1.20443 1.32479 1.12579 0.89003 0.93064 1.25434 0.96150 0.99204 0.95117 1.69953 1.46141 1.41900 0.99007 0.86057 0.80010 0.80732 0.77159 1.18684 1.21782 1.18517 1.84925 1.49713 1.47560 0.98006 1.25350 1.03618 1.03900 0.87173 1.70761 1.10604 1.13159 1.30748 1.22816 1.04507 1.05256 0.87890 1.23427 0.95013 0.97068 1.01478 1.45829 1.30167 1.33166 1.04625 1.22361 0.93782 0.93263 0.98095 0.93359 0.91806 0.92510 0.92216 0.94199 0.91921 0.79543 0.76101 0.89004 0.86049 0.90030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.59 9.43 71.98 0.68 -4.91 16 2 C -0.11 -5.25 5.04 30.59 0.15 -5.09 16 3 C 0.06 3.11 1.54 29.85 0.05 3.15 16 4 H 0.04 2.05 7.03 -2.39 -0.02 2.03 16 5 C -0.51 -28.76 7.73 25.60 0.20 -28.56 16 6 H 0.05 3.18 7.95 -2.91 -0.02 3.15 16 7 C 0.04 2.43 5.45 84.65 0.46 2.90 16 8 N -0.93 -56.96 13.96 21.45 0.30 -56.66 16 9 Si 0.93 46.11 24.35 68.60 1.67 47.78 16 10 H -0.26 -12.24 6.89 99.48 0.69 -11.56 16 11 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 12 H -0.26 -12.83 6.53 99.48 0.65 -12.18 16 13 S -0.03 -1.43 19.67 -56.49 -1.11 -2.54 16 14 C 0.17 6.41 7.58 179.70 1.36 7.78 16 15 N -0.53 -21.27 9.24 -196.46 -1.82 -23.09 16 16 C -0.06 -1.67 11.84 83.43 0.99 -0.68 16 17 C -0.03 -0.81 11.60 82.89 0.96 0.15 16 18 N -0.45 -12.53 3.20 -547.25 -1.75 -14.28 16 19 C 0.07 1.17 11.01 127.77 1.41 2.58 16 20 H 0.05 2.25 7.04 -2.39 -0.02 2.24 16 21 H 0.06 2.49 7.12 -2.39 -0.02 2.47 16 22 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 23 H 0.06 2.65 6.53 -2.39 -0.02 2.64 16 24 H 0.04 1.90 3.33 -2.39 -0.01 1.89 16 25 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 26 H 0.19 4.47 8.06 -2.91 -0.02 4.44 16 27 H 0.22 2.75 8.06 -2.91 -0.02 2.73 16 28 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 29 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.08 1.61 7.73 -2.39 -0.02 1.59 16 Total: -1.00 -70.58 257.76 4.60 -65.98 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: 1.05 Total: 5.49 kcal Atomic # 6 Polarization: -28.94 SS G_CDS: 6.26 Total: -22.69 kcal Atomic # 7 Polarization: -90.76 SS G_CDS: -3.27 Total: -94.03 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.67 Total: 47.78 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -1.11 Total: -2.54 kcal Total: -70.58 4.60 -65.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036679165.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.093 kcal (2) G-P(sol) polarization free energy of solvation -70.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds