Wall clock time and date at job start Mon Mar 30 2020 03:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31018 * 1 3 3 Si 1.86799 * 119.99803 * 2 1 4 4 H 1.48502 * 109.46875 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47519 * 300.00373 * 3 2 1 6 6 H 1.48509 * 109.47074 * 60.00273 * 3 2 1 7 7 C 1.39590 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99679 * 180.02562 * 7 2 1 9 9 N 1.36120 * 119.99883 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99346 * 180.02562 * 9 7 2 11 11 O 1.21505 * 120.00392 * 359.97438 * 10 9 7 12 12 C 1.48828 * 119.99529 * 180.02562 * 10 9 7 13 13 O 1.21440 * 120.00414 * 359.97438 * 12 10 9 14 14 N 1.34775 * 120.00126 * 179.97438 * 12 10 9 15 15 C 1.46504 * 120.00207 * 179.97438 * 14 12 10 16 16 C 1.53003 * 109.46983 * 179.97438 * 15 14 12 17 17 C 1.53786 * 113.61503 * 85.86203 * 16 15 14 18 18 C 1.54049 * 86.98426 * 140.01654 * 17 16 15 19 19 C 1.53781 * 113.61337 * 183.46996 * 16 15 14 20 20 H 0.96997 * 119.99936 * 359.97438 * 1 2 3 21 21 H 0.96999 * 119.99911 * 359.97438 * 9 7 2 22 22 H 0.96999 * 120.00146 * 359.97438 * 14 12 10 23 23 H 1.09000 * 109.47232 * 59.99775 * 15 14 12 24 24 H 1.08997 * 109.47041 * 299.99591 * 15 14 12 25 25 H 1.09002 * 112.85017 * 314.66585 * 16 15 14 26 26 H 1.08992 * 113.61675 * 254.61398 * 17 16 15 27 27 H 1.09000 * 113.60973 * 25.51686 * 17 16 15 28 28 H 1.09005 * 113.62125 * 220.02158 * 18 17 16 29 29 H 1.09003 * 113.61268 * 89.11946 * 18 17 16 30 30 H 1.08999 * 113.61567 * 334.48261 * 19 16 15 31 31 H 1.09000 * 113.61379 * 105.30384 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 3.7041 1.3464 0.0006 5 1 1.8854 2.3965 -1.2124 6 1 1.8854 2.3965 1.2126 7 6 2.0081 -1.2089 -0.0005 8 1 3.0881 -1.2088 -0.0001 9 7 1.3275 -2.3877 -0.0005 10 6 2.0015 -3.5548 -0.0005 11 8 3.2165 -3.5548 -0.0010 12 6 1.2573 -4.8437 -0.0011 13 8 0.0429 -4.8438 -0.0011 14 7 1.9312 -6.0109 -0.0016 15 6 1.1987 -7.2797 -0.0016 16 6 2.1930 -8.4426 -0.0029 17 6 2.6717 -8.8454 1.4019 18 6 2.5728 -10.3077 0.9277 19 6 1.5242 -9.8248 -0.0883 20 1 -0.4850 0.8400 0.0004 21 1 0.3575 -2.3877 0.0002 22 1 2.9012 -6.0110 -0.0020 23 1 0.5716 -7.3373 -0.8914 24 1 0.5724 -7.3377 0.8886 25 1 3.0042 -8.3051 -0.7179 26 1 3.6893 -8.5251 1.6250 27 1 1.9648 -8.5942 2.1927 28 1 2.1710 -10.9851 1.6813 29 1 3.4878 -10.6802 0.4671 30 1 0.5043 -9.8408 0.2958 31 1 1.6150 -10.2940 -1.0680 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037244302.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:05 Heat of formation + Delta-G solvation = -64.284933 kcal Electronic energy + Delta-G solvation = -15086.566901 eV Core-core repulsion = 12368.262563 eV Total energy + Delta-G solvation = -2718.304338 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.67706 -38.73278 -37.08235 -34.55393 -33.69433 -31.38162 -28.46627 -25.82356 -25.68292 -23.50051 -21.84130 -19.92278 -19.06931 -18.29749 -17.04428 -15.97821 -15.65819 -15.06598 -14.81768 -14.63642 -14.05404 -13.79891 -13.56932 -12.75313 -12.58229 -12.46163 -12.02965 -11.76473 -11.63907 -11.20517 -10.72805 -10.59476 -10.46456 -10.39735 -10.36735 -10.27008 -9.72112 -8.69117 -8.25064 -8.21207 -6.65888 -3.98242 2.47514 3.14908 3.17052 3.23793 3.45814 4.07226 4.30067 4.47717 4.51895 4.59505 4.72525 5.10041 5.20055 5.24651 5.39551 5.57304 5.61161 5.70552 5.75646 5.87314 5.93313 6.09270 6.11987 6.35013 6.83137 7.32322 7.71722 7.91145 8.34833 8.65431 8.97807 9.33550 9.86646 10.49151 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.074499 B = 0.004837 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.754955 B = 5787.167241 C = 6046.501154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.030 3.970 3 Si 0.938 3.062 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.306 4.306 8 H 0.113 0.887 9 N -0.500 5.500 10 C 0.395 3.605 11 O -0.598 6.598 12 C 0.512 3.488 13 O -0.548 6.548 14 N -0.713 5.713 15 C 0.130 3.870 16 C -0.125 4.125 17 C -0.138 4.138 18 C -0.143 4.143 19 C -0.131 4.131 20 H 0.280 0.720 21 H 0.405 0.595 22 H 0.409 0.591 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.097 0.903 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.588 -14.393 0.724 14.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.176 4.176 3 Si 0.764 3.236 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.436 4.436 8 H 0.131 0.869 9 N -0.134 5.134 10 C 0.179 3.821 11 O -0.487 6.487 12 C 0.296 3.704 13 O -0.426 6.426 14 N -0.367 5.367 15 C 0.006 3.994 16 C -0.143 4.143 17 C -0.175 4.175 18 C -0.180 4.180 19 C -0.169 4.169 20 H 0.090 0.910 21 H 0.240 0.760 22 H 0.245 0.755 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.115 0.885 26 H 0.088 0.912 27 H 0.102 0.898 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.331 -14.247 0.724 14.455 hybrid contribution 0.176 0.774 -0.019 0.794 sum 2.507 -13.474 0.705 13.723 Atomic orbital electron populations 1.69495 1.06525 1.29228 1.45495 1.25590 0.95626 1.00468 0.95942 0.85668 0.79869 0.80020 0.78054 1.18717 1.20289 1.20297 1.19936 0.94003 0.81895 1.47811 0.86933 1.41574 1.10496 1.04247 1.57116 1.18987 0.87818 0.84267 0.91038 1.90576 1.12912 1.86671 1.58531 1.20687 0.87498 0.85973 0.76241 1.90684 1.14095 1.88167 1.49610 1.45665 1.11108 1.04675 1.75293 1.21337 0.94167 0.81803 1.02101 1.22825 0.98877 0.94004 0.98637 1.23052 1.02015 0.95902 0.96529 1.22856 0.99387 0.96752 0.99003 1.22868 0.98949 0.95293 0.99788 0.90985 0.75999 0.75501 0.91613 0.91561 0.88503 0.91224 0.89849 0.91494 0.90243 0.89794 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.49 13.03 55.53 0.72 -22.77 16 2 C 0.03 0.80 5.51 -17.39 -0.10 0.70 16 3 Si 0.94 20.18 29.56 -169.99 -5.02 15.16 16 4 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.31 -8.52 9.67 -15.14 -0.15 -8.66 16 8 H 0.11 3.20 7.15 -52.49 -0.38 2.82 16 9 N -0.50 -13.58 5.25 -11.59 -0.06 -13.64 16 10 C 0.39 10.11 7.82 -11.88 -0.09 10.02 16 11 O -0.60 -16.23 16.03 5.36 0.09 -16.14 16 12 C 0.51 11.37 7.87 -11.88 -0.09 11.27 16 13 O -0.55 -13.16 16.47 5.42 0.09 -13.07 16 14 N -0.71 -12.43 5.55 -60.93 -0.34 -12.76 16 15 C 0.13 1.80 5.50 -4.04 -0.02 1.78 16 16 C -0.12 -1.31 3.75 -89.80 -0.34 -1.64 16 17 C -0.14 -1.34 7.65 -25.77 -0.20 -1.54 16 18 C -0.14 -1.16 8.09 -25.78 -0.21 -1.37 16 19 C -0.13 -1.14 7.64 -25.92 -0.20 -1.34 16 20 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 21 H 0.40 11.07 7.35 -40.82 -0.30 10.77 16 22 H 0.41 6.73 7.93 -40.82 -0.32 6.40 16 23 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.07 0.95 7.88 -51.93 -0.41 0.54 16 25 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.08 0.84 7.92 -51.93 -0.41 0.43 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 274.17 15.07 4.13 4.13 Total: -1.00 -30.68 274.17 -5.69 -36.38 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -3.91 Total: 13.50 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: -1.39 Total: 9.22 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: 0.32 Total: -49.17 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: 0.18 Total: -29.21 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.68 -5.69 -36.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037244302.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.907 kcal (2) G-P(sol) polarization free energy of solvation -30.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds