Wall clock time and date at job start Mon Mar 30 2020 03:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31018 * 1 3 3 Si 1.86799 * 119.99803 * 2 1 4 4 H 1.48502 * 109.46875 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47519 * 300.00373 * 3 2 1 6 6 H 1.48509 * 109.47074 * 60.00273 * 3 2 1 7 7 C 1.39590 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99679 * 180.02562 * 7 2 1 9 9 N 1.36120 * 119.99883 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99346 * 180.02562 * 9 7 2 11 11 O 1.21505 * 120.00392 * 359.97438 * 10 9 7 12 12 C 1.48828 * 119.99529 * 180.02562 * 10 9 7 13 13 O 1.21440 * 120.00414 * 359.97438 * 12 10 9 14 14 N 1.34775 * 120.00126 * 179.97438 * 12 10 9 15 15 C 1.46504 * 120.00207 * 179.97438 * 14 12 10 16 16 C 1.53003 * 109.46983 * 179.97438 * 15 14 12 17 17 C 1.53786 * 113.61503 * 85.86203 * 16 15 14 18 18 C 1.54049 * 86.98426 * 140.01654 * 17 16 15 19 19 C 1.53781 * 113.61337 * 183.46996 * 16 15 14 20 20 H 0.96997 * 119.99936 * 359.97438 * 1 2 3 21 21 H 0.96999 * 119.99911 * 359.97438 * 9 7 2 22 22 H 0.96999 * 120.00146 * 359.97438 * 14 12 10 23 23 H 1.09000 * 109.47232 * 59.99775 * 15 14 12 24 24 H 1.08997 * 109.47041 * 299.99591 * 15 14 12 25 25 H 1.09002 * 112.85017 * 314.66585 * 16 15 14 26 26 H 1.08992 * 113.61675 * 254.61398 * 17 16 15 27 27 H 1.09000 * 113.60973 * 25.51686 * 17 16 15 28 28 H 1.09005 * 113.62125 * 220.02158 * 18 17 16 29 29 H 1.09003 * 113.61268 * 89.11946 * 18 17 16 30 30 H 1.08999 * 113.61567 * 334.48261 * 19 16 15 31 31 H 1.09000 * 113.61379 * 105.30384 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 3.7041 1.3464 0.0006 5 1 1.8854 2.3965 -1.2124 6 1 1.8854 2.3965 1.2126 7 6 2.0081 -1.2089 -0.0005 8 1 3.0881 -1.2088 -0.0001 9 7 1.3275 -2.3877 -0.0005 10 6 2.0015 -3.5548 -0.0005 11 8 3.2165 -3.5548 -0.0010 12 6 1.2573 -4.8437 -0.0011 13 8 0.0429 -4.8438 -0.0011 14 7 1.9312 -6.0109 -0.0016 15 6 1.1987 -7.2797 -0.0016 16 6 2.1930 -8.4426 -0.0029 17 6 2.6717 -8.8454 1.4019 18 6 2.5728 -10.3077 0.9277 19 6 1.5242 -9.8248 -0.0883 20 1 -0.4850 0.8400 0.0004 21 1 0.3575 -2.3877 0.0002 22 1 2.9012 -6.0110 -0.0020 23 1 0.5716 -7.3373 -0.8914 24 1 0.5724 -7.3377 0.8886 25 1 3.0042 -8.3051 -0.7179 26 1 3.6893 -8.5251 1.6250 27 1 1.9648 -8.5942 2.1927 28 1 2.1710 -10.9851 1.6813 29 1 3.4878 -10.6802 0.4671 30 1 0.5043 -9.8408 0.2958 31 1 1.6150 -10.2940 -1.0680 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037244302.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:05 Heat of formation + Delta-G solvation = -86.700684 kcal Electronic energy + Delta-G solvation = -15087.538921 eV Core-core repulsion = 12368.262563 eV Total energy + Delta-G solvation = -2719.276357 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.33868 -39.85979 -38.93346 -36.47414 -35.34647 -33.44848 -29.73147 -27.70416 -26.47109 -24.97058 -23.20065 -21.36453 -20.48849 -20.08721 -18.81580 -17.64623 -16.94610 -16.75647 -16.44705 -15.92162 -15.75495 -15.19577 -15.04022 -14.56148 -14.09794 -13.68505 -13.30663 -12.98052 -12.89653 -12.62889 -12.56952 -12.30418 -12.08016 -11.68229 -11.50353 -11.25252 -11.15539 -10.28694 -10.23508 -10.18244 -8.66622 -6.11749 0.59364 1.41490 1.46146 1.57643 1.84205 2.29942 2.36787 3.14721 3.27144 3.67697 3.72078 3.81972 4.00035 4.03664 4.31543 4.50460 4.67872 4.89322 4.89584 4.97079 5.12827 5.13282 5.24783 5.25982 5.40058 5.61796 5.67677 6.16191 6.38918 6.81110 7.01787 7.27306 7.79052 8.49553 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.074499 B = 0.004837 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.754955 B = 5787.167241 C = 6046.501154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.005 4.005 3 Si 1.011 2.989 4 H -0.263 1.263 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.346 4.346 8 H 0.099 0.901 9 N -0.511 5.511 10 C 0.389 3.611 11 O -0.617 6.617 12 C 0.516 3.484 13 O -0.569 6.569 14 N -0.691 5.691 15 C 0.126 3.874 16 C -0.124 4.124 17 C -0.143 4.143 18 C -0.133 4.133 19 C -0.126 4.126 20 H 0.289 0.711 21 H 0.400 0.600 22 H 0.416 0.584 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.103 0.897 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.110 -15.101 0.678 15.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.209 4.209 3 Si 0.832 3.168 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.476 4.476 8 H 0.117 0.883 9 N -0.145 5.145 10 C 0.174 3.826 11 O -0.507 6.507 12 C 0.299 3.701 13 O -0.449 6.449 14 N -0.344 5.344 15 C 0.004 3.996 16 C -0.143 4.143 17 C -0.181 4.181 18 C -0.170 4.170 19 C -0.164 4.164 20 H 0.099 0.901 21 H 0.235 0.765 22 H 0.252 0.748 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.122 0.878 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.860 -15.001 0.679 15.287 hybrid contribution 0.006 0.890 0.000 0.890 sum 2.866 -14.111 0.679 14.415 Atomic orbital electron populations 1.69558 1.07870 1.30789 1.45189 1.26563 0.96504 1.03513 0.94326 0.84624 0.78255 0.75166 0.78747 1.18740 1.19026 1.19040 1.20036 0.93710 0.83077 1.50757 0.88298 1.41671 1.10240 1.04835 1.57757 1.19636 0.87875 0.85275 0.89818 1.90542 1.13802 1.87311 1.59050 1.20102 0.87015 0.86073 0.76935 1.90674 1.14641 1.88376 1.51199 1.45670 1.11523 1.04534 1.72659 1.21634 0.94991 0.80987 1.01993 1.22879 0.98510 0.93356 0.99544 1.23096 1.01800 0.97366 0.95822 1.22831 0.99642 0.95710 0.98860 1.22880 0.99149 0.93615 1.00721 0.90075 0.76491 0.74750 0.91645 0.91688 0.87837 0.91254 0.90427 0.90528 0.89194 0.89599 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.54 13.03 21.77 0.28 -48.25 16 2 C 0.00 -0.26 5.51 85.14 0.47 0.21 16 3 Si 1.01 40.92 29.56 68.60 2.03 42.95 16 4 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 5 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 6 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 7 C -0.35 -19.68 9.67 84.35 0.82 -18.87 16 8 H 0.10 5.78 7.15 -2.91 -0.02 5.76 16 9 N -0.51 -28.51 5.25 -308.87 -1.62 -30.13 16 10 C 0.39 20.31 7.82 87.08 0.68 20.99 16 11 O -0.62 -33.98 16.03 -3.73 -0.06 -34.04 16 12 C 0.52 23.03 7.87 87.08 0.69 23.72 16 13 O -0.57 -27.52 16.47 -3.53 -0.06 -27.57 16 14 N -0.69 -23.62 5.55 -465.00 -2.58 -26.20 16 15 C 0.13 3.36 5.50 86.38 0.47 3.84 16 16 C -0.12 -2.36 3.75 -10.26 -0.04 -2.39 16 17 C -0.14 -2.53 7.65 31.21 0.24 -2.29 16 18 C -0.13 -1.80 8.09 31.21 0.25 -1.55 16 19 C -0.13 -1.86 7.64 31.12 0.24 -1.62 16 20 H 0.29 14.25 8.30 -92.71 -0.77 13.48 16 21 H 0.40 22.59 7.35 -92.71 -0.68 21.91 16 22 H 0.42 13.29 7.93 -92.71 -0.74 12.56 16 23 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.06 1.79 7.88 -2.39 -0.02 1.77 16 25 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.08 1.46 7.92 -2.39 -0.02 1.44 16 28 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.09 1.26 8.10 -2.39 -0.02 1.24 16 31 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -65.70 274.17 1.55 -64.15 By element: Atomic # 1 Polarization: 37.32 SS G_CDS: -0.26 Total: 37.06 kcal Atomic # 6 Polarization: 18.22 SS G_CDS: 3.82 Total: 22.04 kcal Atomic # 7 Polarization: -100.67 SS G_CDS: -3.92 Total: -104.59 kcal Atomic # 8 Polarization: -61.49 SS G_CDS: -0.12 Total: -61.61 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Total: -65.70 1.55 -64.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037244302.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.551 kcal (2) G-P(sol) polarization free energy of solvation -65.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds