Wall clock time and date at job start Mon Mar 30 2020 03:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46904 * 109.46801 * 2 1 4 4 C 1.46898 * 110.99736 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47682 * 35.00116 * 4 3 2 6 6 C 1.53006 * 109.47272 * 274.99586 * 4 3 2 7 7 C 1.50707 * 109.47097 * 155.00103 * 4 3 2 8 8 C 1.34860 * 125.38089 * 219.99581 * 7 4 3 9 9 N 1.30457 * 115.79235 * 179.97438 * 8 7 4 10 10 C 1.31866 * 115.68894 * 0.02562 * 9 8 7 11 11 C 1.39908 * 125.55334 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00278 * 180.02562 * 11 10 9 13 13 C 1.40247 * 119.99935 * 359.74956 * 11 10 9 14 14 N 1.30694 * 120.00119 * 0.27850 * 13 11 10 15 15 Si 1.86803 * 119.99956 * 180.27682 * 13 11 10 16 16 H 1.48498 * 109.47174 * 90.00222 * 15 13 11 17 17 H 1.48501 * 109.47062 * 210.00173 * 15 13 11 18 18 H 1.48504 * 109.46913 * 329.99972 * 15 13 11 19 19 S 1.71034 * 125.38176 * 40.26541 * 7 4 3 20 20 H 1.08998 * 109.46852 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47353 * 299.99864 * 1 2 3 22 22 H 1.09006 * 109.47223 * 60.00394 * 1 2 3 23 23 H 1.09000 * 109.47353 * 240.00136 * 2 1 3 24 24 H 1.08993 * 109.47383 * 119.99660 * 2 1 3 25 25 H 1.00897 * 111.00197 * 56.04470 * 3 2 1 26 26 H 1.09003 * 109.47244 * 180.02562 * 6 4 3 27 27 H 1.08999 * 109.46966 * 300.00335 * 6 4 3 28 28 H 1.09001 * 109.46370 * 59.99964 * 6 4 3 29 29 H 1.08004 * 122.10252 * 359.97438 * 8 7 4 30 30 H 0.97005 * 120.00041 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0195 1.3851 0.0000 4 6 3.4880 1.4243 -0.0006 5 1 3.8735 0.5926 -0.5903 6 6 4.0018 1.3121 1.4362 7 6 3.9555 2.7251 -0.6011 8 6 5.0062 2.8674 -1.4345 9 7 5.2452 4.0827 -1.8442 10 6 4.4272 5.0109 -1.3881 11 6 4.4939 6.3749 -1.6924 12 1 3.7749 7.0590 -1.2665 13 6 5.4980 6.8546 -2.5459 14 7 6.3681 6.0268 -3.0614 15 14 5.5918 8.6769 -2.9460 16 1 6.4579 9.3583 -1.9508 17 1 6.1632 8.8565 -4.3049 18 1 4.2286 9.2644 -2.9006 19 16 3.2415 4.2551 -0.3282 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8901 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5137 0.8899 25 1 1.6440 1.9013 0.7813 26 1 5.0915 1.3416 1.4358 27 1 3.6164 2.1438 2.0259 28 1 3.6636 0.3713 1.8705 29 1 5.6117 2.0280 -1.7432 30 1 7.0624 6.3586 -3.6520 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054159679.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:36 Heat of formation + Delta-G solvation = 20.369900 kcal Electronic energy + Delta-G solvation = -13201.852093 eV Core-core repulsion = 10929.971535 eV Total energy + Delta-G solvation = -2271.880558 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -37.70423 -36.52900 -33.70706 -32.07189 -28.86142 -27.57986 -26.01717 -22.84814 -21.96876 -20.87154 -19.26948 -16.49174 -16.26693 -15.18742 -14.99379 -14.35659 -14.22096 -13.30397 -12.84194 -12.68125 -12.49729 -12.44460 -11.83046 -11.61254 -11.43954 -11.25428 -11.16358 -10.97163 -10.81545 -10.49202 -10.15837 -9.58380 -9.44312 -7.99323 -7.55672 -7.53323 -7.32654 -6.65697 -4.54776 2.57158 3.00983 3.04277 3.09408 3.39243 3.81072 3.89038 4.41995 4.68860 5.23445 5.31497 5.41191 5.55454 5.65590 5.78688 5.86809 5.89050 6.13347 6.20540 6.31177 6.34956 6.55428 6.65366 6.91217 7.29100 7.47348 7.71485 7.82853 8.03441 8.30689 8.63904 9.99891 10.14335 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.055156 B = 0.006448 C = 0.006189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.533468 B = 4341.528014 C = 4523.161174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 N -0.678 5.678 4 C 0.192 3.808 5 H 0.069 0.931 6 C -0.172 4.172 7 C -0.371 4.371 8 C 0.097 3.903 9 N -0.537 5.537 10 C 0.228 3.772 11 C -0.389 4.389 12 H 0.093 0.907 13 C 0.071 3.929 14 N -0.707 5.707 15 Si 0.920 3.080 16 H -0.266 1.266 17 H -0.273 1.273 18 H -0.258 1.258 19 S -0.070 6.070 20 H 0.053 0.947 21 H 0.050 0.950 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.021 0.979 25 H 0.336 0.664 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.040 0.960 29 H 0.125 0.875 30 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.725 -4.809 4.316 8.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.076 4.076 3 N -0.309 5.309 4 C 0.081 3.919 5 H 0.087 0.913 6 C -0.231 4.231 7 C -0.496 4.496 8 C -0.064 4.064 9 N -0.256 5.256 10 C -0.023 4.023 11 C -0.432 4.432 12 H 0.111 0.889 13 C -0.159 4.159 14 N -0.329 5.329 15 Si 0.743 3.257 16 H -0.191 1.191 17 H -0.198 1.198 18 H -0.182 1.182 19 S 0.186 5.814 20 H 0.072 0.928 21 H 0.069 0.931 22 H 0.082 0.918 23 H 0.086 0.914 24 H 0.039 0.961 25 H 0.154 0.846 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.142 0.858 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.042 -4.323 3.750 7.627 hybrid contribution 0.839 -0.419 0.459 1.044 sum -4.204 -4.741 4.209 7.607 Atomic orbital electron populations 1.21757 0.95502 1.01009 1.02348 1.21911 0.95249 0.90620 0.99781 1.60675 1.08439 1.11961 1.49864 1.19294 0.85604 0.93887 0.93148 0.91290 1.22502 1.02188 0.99993 0.98407 1.23528 1.09254 0.97072 1.19750 1.21413 0.94860 0.95498 0.94640 1.67694 1.29211 0.98153 1.30494 1.24145 0.89158 0.97001 0.92038 1.18999 1.11165 0.90365 1.22652 0.88923 1.26091 0.94550 1.00456 0.94821 1.70012 1.08784 1.36179 1.17959 0.86118 0.79985 0.81050 0.78582 1.19094 1.19827 1.18166 1.82888 1.41144 1.01782 1.55630 0.92758 0.93106 0.91811 0.91446 0.96102 0.84625 0.92199 0.92710 0.94112 0.85766 0.90807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 10.17 37.15 0.38 -1.38 16 2 C 0.05 0.75 6.20 -3.82 -0.02 0.72 16 3 N -0.68 -11.66 5.98 -107.95 -0.65 -12.30 16 4 C 0.19 3.58 3.02 -68.86 -0.21 3.38 16 5 H 0.07 1.26 7.78 -51.93 -0.40 0.86 16 6 C -0.17 -2.82 9.14 37.16 0.34 -2.48 16 7 C -0.37 -8.58 5.35 -35.50 -0.19 -8.77 16 8 C 0.10 2.45 11.14 -19.33 -0.22 2.23 16 9 N -0.54 -15.23 8.76 -13.16 -0.12 -15.34 16 10 C 0.23 6.29 7.07 -16.91 -0.12 6.17 16 11 C -0.39 -10.22 9.40 -38.20 -0.36 -10.58 16 12 H 0.09 2.25 7.85 -52.49 -0.41 1.83 16 13 C 0.07 1.75 5.50 -17.28 -0.10 1.66 16 14 N -0.71 -18.65 11.87 55.56 0.66 -17.99 16 15 Si 0.92 17.89 29.56 -169.99 -5.03 12.87 16 16 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 17 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 18 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 19 S -0.07 -1.69 22.85 -107.50 -2.46 -4.15 16 20 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.07 0.95 8.05 -51.93 -0.42 0.53 16 24 H 0.02 0.27 7.44 -51.93 -0.39 -0.12 16 25 H 0.34 5.62 8.47 -39.29 -0.33 5.29 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.93 8.13 -51.93 -0.42 0.51 16 28 H 0.04 0.57 7.45 -51.93 -0.39 0.18 16 29 H 0.12 2.86 8.06 -52.48 -0.42 2.44 16 30 H 0.28 6.61 8.29 -40.82 -0.34 6.28 16 LS Contribution 271.43 15.07 4.09 4.09 Total: -1.00 -28.83 271.43 -7.99 -36.83 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -4.01 Total: 5.06 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -0.49 Total: -9.06 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: -0.10 Total: -45.64 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.87 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.46 Total: -4.15 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.83 -7.99 -36.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054159679.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.195 kcal (2) G-P(sol) polarization free energy of solvation -28.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds