Wall clock time and date at job start Mon Mar 30 2020 02:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46913 * 2 1 4 4 C 1.53000 * 109.47073 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46990 * 180.02562 * 4 3 2 6 6 C 1.37324 * 126.49898 * 264.99741 * 5 4 3 7 7 C 1.34719 * 106.97391 * 180.02562 * 6 5 4 8 8 N 1.34043 * 108.35415 * 359.76232 * 7 6 5 9 9 C 1.31391 * 109.29644 * 0.39426 * 8 7 6 10 10 S 1.76197 * 125.81091 * 179.86627 * 9 8 7 11 11 C 1.76199 * 100.00148 * 359.69681 * 10 9 8 12 12 H 1.07999 * 119.99976 * 0.02562 * 11 10 9 13 13 C 1.38651 * 119.99858 * 179.97438 * 11 10 9 14 14 N 1.31653 * 119.99985 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99974 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47057 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47216 * 120.00069 * 15 13 11 18 18 H 1.48497 * 109.47025 * 240.00222 * 15 13 11 19 19 H 1.09002 * 109.47295 * 299.99900 * 1 2 3 20 20 H 1.09004 * 109.47650 * 59.99952 * 1 2 3 21 21 H 1.09001 * 109.47124 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46844 * 240.00279 * 2 1 3 23 23 H 1.08998 * 109.47223 * 119.99914 * 2 1 3 24 24 H 1.09002 * 109.47058 * 59.99955 * 3 2 1 25 25 H 1.08998 * 109.47106 * 299.99986 * 3 2 1 26 26 H 1.08998 * 109.47049 * 60.00056 * 4 3 2 27 27 H 1.08998 * 109.46859 * 299.99789 * 4 3 2 28 28 H 1.07993 * 126.51594 * 0.03145 * 6 5 4 29 29 H 1.07996 * 125.82264 * 180.02562 * 7 6 5 30 30 H 0.96996 * 119.99621 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.4207 3.5625 -1.0994 7 6 4.8076 4.7723 -0.6503 8 7 4.6842 4.7863 0.6844 9 6 4.2392 3.6190 1.0915 10 16 3.9233 3.1622 2.7637 11 6 4.3773 4.6562 3.5800 12 1 4.7288 5.5003 3.0052 13 6 4.2822 4.7486 4.9602 14 7 3.8532 3.7198 5.6607 15 14 4.7642 6.3322 5.8257 16 1 5.2108 7.3297 4.8203 17 1 3.5939 6.8672 6.5670 18 1 5.8705 6.0590 6.7778 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 1.6766 1.9564 0.8900 25 1 1.6766 1.9563 -0.8900 26 1 3.9329 0.9289 -0.8909 27 1 3.9336 0.9287 0.8891 28 1 4.3996 3.2359 -2.1286 29 1 5.1537 5.5925 -1.2617 30 1 3.7870 3.7843 6.6263 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057489740.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:15 Heat of formation + Delta-G solvation = 34.937399 kcal Electronic energy + Delta-G solvation = -13150.581793 eV Core-core repulsion = 10879.332930 eV Total energy + Delta-G solvation = -2271.248863 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.92010 -35.88558 -32.74692 -32.45302 -28.87648 -28.20098 -25.52767 -23.79927 -21.21353 -20.66242 -20.48713 -17.75571 -16.50299 -15.45663 -14.84741 -14.81062 -14.35497 -13.60874 -13.43359 -13.17804 -12.84865 -12.76679 -12.28797 -11.37518 -11.30871 -11.08278 -11.07509 -11.03287 -10.90439 -10.56266 -10.05130 -9.35021 -9.08714 -8.86636 -8.71478 -8.31009 -6.46506 -6.33503 -4.03732 2.70779 2.84285 3.24375 3.30037 3.41109 3.66395 3.96840 4.13421 4.85398 4.90033 5.08135 5.09618 5.17408 5.19807 5.50141 5.56853 5.60566 5.75072 5.81151 5.91074 5.94930 6.14573 6.22524 6.35002 6.39296 6.96641 7.50277 7.71111 7.73877 8.53206 8.90914 9.19271 10.75529 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.027634 B = 0.008117 C = 0.006565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.006285 B = 3448.518817 C = 4264.190217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.137 4.137 4 C 0.111 3.889 5 N -0.461 5.461 6 C -0.091 4.091 7 C -0.025 4.025 8 N -0.499 5.499 9 C 0.206 3.794 10 S 0.098 5.902 11 C -0.519 4.519 12 H 0.104 0.896 13 C 0.070 3.930 14 N -0.882 5.882 15 Si 0.929 3.071 16 H -0.266 1.266 17 H -0.280 1.280 18 H -0.280 1.280 19 H 0.058 0.942 20 H 0.051 0.949 21 H 0.053 0.947 22 H 0.059 0.941 23 H 0.067 0.933 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.161 0.839 29 H 0.157 0.843 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.376 -6.678 -10.618 12.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.175 4.175 4 C -0.012 4.012 5 N -0.148 5.148 6 C -0.226 4.226 7 C -0.176 4.176 8 N -0.221 5.221 9 C -0.163 4.163 10 S 0.331 5.669 11 C -0.668 4.668 12 H 0.122 0.878 13 C -0.138 4.138 14 N -0.519 5.519 15 Si 0.755 3.245 16 H -0.190 1.190 17 H -0.206 1.206 18 H -0.205 1.205 19 H 0.077 0.923 20 H 0.070 0.930 21 H 0.072 0.928 22 H 0.078 0.922 23 H 0.086 0.914 24 H 0.098 0.902 25 H 0.082 0.918 26 H 0.101 0.899 27 H 0.110 0.890 28 H 0.178 0.822 29 H 0.174 0.826 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.678 -7.226 -9.429 12.436 hybrid contribution 0.563 1.382 -0.711 1.653 sum -3.115 -5.844 -10.140 12.111 Atomic orbital electron populations 1.21750 0.95620 1.01429 1.02084 1.21434 0.96200 0.96022 1.02116 1.21993 0.94220 0.97635 1.03697 1.21753 0.95035 0.80597 1.03803 1.45531 1.51239 1.12073 1.05976 1.22412 1.13374 0.94812 0.92018 1.22208 1.06328 0.96729 0.92315 1.70813 1.21370 1.19507 1.10458 1.26783 1.03326 0.88986 0.97178 1.83276 1.79060 1.21682 0.82863 1.23200 1.50042 0.99796 0.93727 0.87842 1.25057 0.94428 0.98101 0.96208 1.69983 1.44460 1.29981 1.07447 0.85927 0.78156 0.81489 0.78947 1.19050 1.20564 1.20548 0.92294 0.92954 0.92814 0.92187 0.91378 0.90151 0.91754 0.89945 0.89038 0.82202 0.82600 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 37.16 0.37 -1.15 16 2 C -0.12 -1.27 5.93 -26.73 -0.16 -1.43 16 3 C -0.14 -1.85 5.54 -26.73 -0.15 -1.99 16 4 C 0.11 1.63 5.92 -4.04 -0.02 1.61 16 5 N -0.46 -8.79 2.80 -116.87 -0.33 -9.12 16 6 C -0.09 -1.60 11.59 -16.34 -0.19 -1.79 16 7 C -0.02 -0.50 11.84 -17.83 -0.21 -0.71 16 8 N -0.50 -12.39 10.01 -13.39 -0.13 -12.52 16 9 C 0.21 4.89 7.95 -88.52 -0.70 4.19 16 10 S 0.10 2.54 21.33 -107.50 -2.29 0.25 16 11 C -0.52 -15.08 9.36 30.88 0.29 -14.79 16 12 H 0.10 3.11 6.89 -52.49 -0.36 2.75 16 13 C 0.07 1.97 5.49 -17.48 -0.10 1.88 16 14 N -0.88 -25.43 13.22 55.48 0.73 -24.70 16 15 Si 0.93 21.92 29.55 -169.99 -5.02 16.90 16 16 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 20 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 21 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.09 1.39 7.90 -51.93 -0.41 0.98 16 28 H 0.16 2.12 8.06 -52.49 -0.42 1.69 16 29 H 0.16 2.60 8.06 -52.49 -0.42 2.18 16 30 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 276.13 15.07 4.16 4.16 Total: -1.00 -32.18 276.13 -7.89 -40.07 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -4.13 Total: -0.85 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -0.87 Total: -14.19 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: 0.27 Total: -46.34 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 2.54 SS G_CDS: -2.29 Total: 0.25 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -32.18 -7.89 -40.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057489740.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.009 kcal (2) G-P(sol) polarization free energy of solvation -32.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds