Wall clock time and date at job start Mon Mar 30 2020 02:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46913 * 2 1 4 4 C 1.53000 * 109.47073 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46990 * 180.02562 * 4 3 2 6 6 C 1.37324 * 126.49898 * 264.99741 * 5 4 3 7 7 C 1.34719 * 106.97391 * 180.02562 * 6 5 4 8 8 N 1.34043 * 108.35415 * 359.76232 * 7 6 5 9 9 C 1.31391 * 109.29644 * 0.39426 * 8 7 6 10 10 S 1.76197 * 125.81091 * 179.86627 * 9 8 7 11 11 C 1.76199 * 100.00148 * 359.69681 * 10 9 8 12 12 H 1.07999 * 119.99976 * 0.02562 * 11 10 9 13 13 C 1.38651 * 119.99858 * 179.97438 * 11 10 9 14 14 N 1.31653 * 119.99985 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99974 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47057 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47216 * 120.00069 * 15 13 11 18 18 H 1.48497 * 109.47025 * 240.00222 * 15 13 11 19 19 H 1.09002 * 109.47295 * 299.99900 * 1 2 3 20 20 H 1.09004 * 109.47650 * 59.99952 * 1 2 3 21 21 H 1.09001 * 109.47124 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46844 * 240.00279 * 2 1 3 23 23 H 1.08998 * 109.47223 * 119.99914 * 2 1 3 24 24 H 1.09002 * 109.47058 * 59.99955 * 3 2 1 25 25 H 1.08998 * 109.47106 * 299.99986 * 3 2 1 26 26 H 1.08998 * 109.47049 * 60.00056 * 4 3 2 27 27 H 1.08998 * 109.46859 * 299.99789 * 4 3 2 28 28 H 1.07993 * 126.51594 * 0.03145 * 6 5 4 29 29 H 1.07996 * 125.82264 * 180.02562 * 7 6 5 30 30 H 0.96996 * 119.99621 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.4207 3.5625 -1.0994 7 6 4.8076 4.7723 -0.6503 8 7 4.6842 4.7863 0.6844 9 6 4.2392 3.6190 1.0915 10 16 3.9233 3.1622 2.7637 11 6 4.3773 4.6562 3.5800 12 1 4.7288 5.5003 3.0052 13 6 4.2822 4.7486 4.9602 14 7 3.8532 3.7198 5.6607 15 14 4.7642 6.3322 5.8257 16 1 5.2108 7.3297 4.8203 17 1 3.5939 6.8672 6.5670 18 1 5.8705 6.0590 6.7778 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 1.6766 1.9564 0.8900 25 1 1.6766 1.9563 -0.8900 26 1 3.9329 0.9289 -0.8909 27 1 3.9336 0.9287 0.8891 28 1 4.3996 3.2359 -2.1286 29 1 5.1537 5.5925 -1.2617 30 1 3.7870 3.7843 6.6263 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057489740.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:15 Heat of formation + Delta-G solvation = 15.843684 kcal Electronic energy + Delta-G solvation = -13151.409759 eV Core-core repulsion = 10879.332930 eV Total energy + Delta-G solvation = -2272.076829 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.50745 -37.00671 -34.68794 -33.94712 -30.37840 -29.46106 -27.69932 -24.96418 -22.42892 -22.12114 -21.96017 -19.65984 -18.11714 -16.91915 -16.49695 -16.26983 -16.00930 -15.06252 -14.82759 -14.51669 -14.31328 -13.96667 -13.41648 -13.20084 -12.96999 -12.85781 -12.41778 -12.31003 -11.97953 -11.94884 -11.52090 -11.32824 -10.91559 -10.63794 -10.45542 -10.04648 -8.45830 -8.37495 -6.19135 1.06082 1.15723 1.38104 1.39043 1.55725 2.15698 2.22886 2.31180 2.93706 3.16067 3.77261 3.86031 4.06497 4.22999 4.27106 4.43662 4.53166 4.66434 4.73175 4.85455 4.93518 5.04306 5.24007 5.31101 5.44956 5.47396 5.53879 5.95609 6.25683 6.29921 7.01945 7.28778 8.64409 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.027634 B = 0.008117 C = 0.006565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.006285 B = 3448.518817 C = 4264.190217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.129 4.129 4 C 0.102 3.898 5 N -0.451 5.451 6 C -0.052 4.052 7 C -0.060 4.060 8 N -0.542 5.542 9 C 0.171 3.829 10 S 0.068 5.932 11 C -0.545 4.545 12 H 0.082 0.918 13 C 0.024 3.976 14 N -0.909 5.909 15 Si 0.995 3.005 16 H -0.273 1.273 17 H -0.266 1.266 18 H -0.266 1.266 19 H 0.041 0.959 20 H 0.058 0.942 21 H 0.069 0.931 22 H 0.087 0.913 23 H 0.063 0.937 24 H 0.042 0.958 25 H 0.071 0.929 26 H 0.127 0.873 27 H 0.081 0.919 28 H 0.218 0.782 29 H 0.184 0.816 30 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.360 -7.351 -12.629 14.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.168 4.168 4 C -0.019 4.019 5 N -0.137 5.137 6 C -0.188 4.188 7 C -0.210 4.210 8 N -0.265 5.265 9 C -0.199 4.199 10 S 0.300 5.700 11 C -0.694 4.694 12 H 0.100 0.900 13 C -0.181 4.181 14 N -0.546 5.546 15 Si 0.817 3.183 16 H -0.197 1.197 17 H -0.191 1.191 18 H -0.191 1.191 19 H 0.060 0.940 20 H 0.077 0.923 21 H 0.088 0.912 22 H 0.105 0.895 23 H 0.082 0.918 24 H 0.061 0.939 25 H 0.090 0.910 26 H 0.145 0.855 27 H 0.099 0.901 28 H 0.234 0.766 29 H 0.201 0.799 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.675 -7.935 -11.451 14.409 hybrid contribution 0.555 1.546 -0.306 1.671 sum -3.121 -6.389 -11.758 13.741 Atomic orbital electron populations 1.21760 0.95220 1.02376 1.01606 1.21419 0.96510 0.94035 1.03223 1.21920 0.93288 0.99353 1.02194 1.22154 0.95791 0.78451 1.05491 1.45849 1.49562 1.13252 1.05071 1.23279 1.08734 0.93275 0.93529 1.22805 1.08100 0.99175 0.90920 1.70671 1.21772 1.20687 1.13412 1.26176 1.06419 0.90229 0.97037 1.82904 1.80658 1.21115 0.85300 1.23299 1.50962 1.00495 0.94620 0.89956 1.25952 0.94079 1.01498 0.96582 1.70052 1.44864 1.31680 1.08002 0.84954 0.78527 0.77131 0.77680 1.19707 1.19123 1.19055 0.93992 0.92276 0.91157 0.89470 0.91825 0.93878 0.91007 0.85482 0.90071 0.76592 0.79931 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.91 71.98 0.71 -2.07 16 2 C -0.11 -2.16 5.93 30.59 0.18 -1.98 16 3 C -0.13 -3.28 5.54 30.59 0.17 -3.11 16 4 C 0.10 2.77 5.92 86.38 0.51 3.29 16 5 N -0.45 -16.48 2.80 -523.66 -1.46 -17.94 16 6 C -0.05 -1.65 11.59 83.03 0.96 -0.69 16 7 C -0.06 -2.32 11.84 83.55 0.99 -1.33 16 8 N -0.54 -27.28 10.01 -196.27 -1.97 -29.24 16 9 C 0.17 8.26 7.95 179.61 1.43 9.68 16 10 S 0.07 3.66 21.33 -56.49 -1.20 2.46 16 11 C -0.55 -32.96 9.36 67.92 0.64 -32.33 16 12 H 0.08 5.19 6.89 -2.91 -0.02 5.17 16 13 C 0.02 1.38 5.49 84.82 0.47 1.85 16 14 N -0.91 -53.48 13.22 21.62 0.29 -53.19 16 15 Si 1.00 45.66 29.55 68.60 2.03 47.69 16 16 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 17 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 19 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 20 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 21 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 22 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.08 2.40 7.90 -2.39 -0.02 2.38 16 28 H 0.22 4.29 8.06 -2.91 -0.02 4.26 16 29 H 0.18 5.70 8.06 -2.91 -0.02 5.68 16 30 H 0.28 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -72.85 276.13 4.85 -68.01 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 1.11 Total: 8.92 kcal Atomic # 6 Polarization: -32.75 SS G_CDS: 6.06 Total: -26.70 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -3.14 Total: -100.38 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -1.20 Total: 2.46 kcal Total: -72.85 4.85 -68.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057489740.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.850 kcal (2) G-P(sol) polarization free energy of solvation -72.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds