Wall clock time and date at job start Mon Mar 30 2020 02:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47266 * 2 1 4 4 C 1.53008 * 109.46701 * 119.99604 * 2 1 3 5 5 N 1.46508 * 109.46700 * 175.00197 * 4 2 1 6 6 C 1.37322 * 126.49834 * 265.02162 * 5 4 2 7 7 C 1.34721 * 106.97543 * 179.97438 * 6 5 4 8 8 N 1.34037 * 108.34982 * 0.27076 * 7 6 5 9 9 C 1.31385 * 109.30065 * 359.55054 * 8 7 6 10 10 S 1.76200 * 125.81611 * 180.14906 * 9 8 7 11 11 C 1.76202 * 99.99681 * 0.34503 * 10 9 8 12 12 H 1.08001 * 119.99987 * 359.97438 * 11 10 9 13 13 C 1.38643 * 119.99911 * 179.97438 * 11 10 9 14 14 N 1.31650 * 120.00265 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 120.00280 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46718 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47105 * 119.99729 * 15 13 11 18 18 H 1.48495 * 109.47227 * 240.00403 * 15 13 11 19 19 H 1.09001 * 109.47447 * 300.00275 * 1 2 3 20 20 H 1.09003 * 109.47211 * 60.00128 * 1 2 3 21 21 H 1.08998 * 109.47676 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47554 * 239.99274 * 2 1 3 23 23 H 1.09002 * 109.47417 * 299.99980 * 3 2 1 24 24 H 1.09004 * 109.47533 * 59.99776 * 3 2 1 25 25 H 1.09002 * 109.47661 * 179.97438 * 3 2 1 26 26 H 1.08993 * 109.47020 * 55.00440 * 4 2 1 27 27 H 1.08998 * 109.47179 * 294.99455 * 4 2 1 28 28 H 1.08003 * 126.51388 * 0.02562 * 6 5 4 29 29 H 1.08002 * 125.82094 * 179.97438 * 7 6 5 30 30 H 0.97004 * 120.00425 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 3.5000 -0.8263 1.1907 6 6 4.2238 -1.8951 0.7223 7 6 5.5261 -1.5740 0.8487 8 7 5.6083 -0.3479 1.3839 9 6 4.3972 0.1180 1.5901 10 16 4.0009 1.6926 2.2746 11 6 5.6229 2.3302 2.5344 12 1 6.4853 1.7364 2.2698 13 6 5.7919 3.5941 3.0785 14 7 4.7406 4.3177 3.4015 15 14 7.5114 4.2699 3.3546 16 1 8.5140 3.2678 2.9122 17 1 7.6834 5.5202 2.5720 18 1 7.7037 4.5591 4.7984 19 1 -0.3634 0.5139 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8899 23 1 1.6767 1.9563 -0.8900 24 1 1.6766 1.9564 0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6053 -1.7197 1.2953 27 1 1.7516 -0.1582 2.1370 28 1 3.8249 -2.8176 0.3269 29 1 6.3613 -2.1999 0.5709 30 1 4.8588 5.2019 3.7825 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057489743.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:18 Heat of formation + Delta-G solvation = 40.956089 kcal Electronic energy + Delta-G solvation = -13564.234405 eV Core-core repulsion = 11293.246531 eV Total energy + Delta-G solvation = -2270.987873 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.97979 -36.27138 -32.52876 -31.90468 -28.70130 -26.90863 -25.98964 -25.50619 -20.92963 -20.69865 -19.92977 -17.82186 -16.57832 -15.01709 -14.82541 -14.75630 -14.39078 -13.49098 -13.33921 -13.06043 -12.79142 -12.24908 -12.13132 -11.81784 -11.17702 -11.05676 -11.01695 -10.85618 -10.73630 -10.57424 -10.04168 -9.27637 -9.06797 -8.84548 -8.66419 -8.25212 -6.42105 -6.32565 -4.01576 2.71120 2.84354 3.24458 3.30302 3.41322 3.68167 3.96857 4.14227 4.85988 4.94675 5.10374 5.14320 5.20727 5.40079 5.58391 5.60273 5.75264 5.89639 5.95577 6.04093 6.11758 6.30596 6.34899 6.52952 6.90339 6.97068 7.50550 7.71768 7.74521 8.53949 8.91258 9.20397 10.75984 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.032360 B = 0.009188 C = 0.007501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.052761 B = 3046.852595 C = 3731.790426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C -0.157 4.157 4 C 0.114 3.886 5 N -0.458 5.458 6 C -0.091 4.091 7 C -0.025 4.025 8 N -0.499 5.499 9 C 0.205 3.795 10 S 0.108 5.892 11 C -0.524 4.524 12 H 0.103 0.897 13 C 0.071 3.929 14 N -0.883 5.883 15 Si 0.927 3.073 16 H -0.267 1.267 17 H -0.280 1.280 18 H -0.280 1.280 19 H 0.060 0.940 20 H 0.058 0.942 21 H 0.051 0.949 22 H 0.069 0.931 23 H 0.049 0.951 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.160 0.840 29 H 0.156 0.844 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.460 -8.133 -5.158 12.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.129 4.129 3 C -0.215 4.215 4 C -0.010 4.010 5 N -0.146 5.146 6 C -0.226 4.226 7 C -0.176 4.176 8 N -0.222 5.222 9 C -0.164 4.164 10 S 0.341 5.659 11 C -0.673 4.673 12 H 0.121 0.879 13 C -0.137 4.137 14 N -0.519 5.519 15 Si 0.753 3.247 16 H -0.191 1.191 17 H -0.206 1.206 18 H -0.206 1.206 19 H 0.079 0.921 20 H 0.078 0.922 21 H 0.070 0.930 22 H 0.088 0.912 23 H 0.068 0.932 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.110 0.890 28 H 0.178 0.822 29 H 0.174 0.826 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.972 -7.002 -4.635 11.578 hybrid contribution 1.418 -0.775 -0.329 1.650 sum -6.553 -7.777 -4.964 11.317 Atomic orbital electron populations 1.21781 0.94498 1.01401 1.02434 1.21523 0.95805 0.98175 0.97370 1.22189 1.03559 0.93891 1.01832 1.21863 0.77499 1.01670 0.99931 1.45502 1.06239 1.13603 1.49221 1.22413 0.92882 0.94704 1.12603 1.22202 0.94878 0.95340 1.05192 1.70811 1.20948 1.10092 1.20302 1.26778 0.86026 0.99656 1.03900 1.83378 1.13092 0.98032 1.71362 1.23278 0.92731 1.03876 1.47421 0.87912 1.25033 0.98766 0.95550 0.94340 1.69974 1.29311 1.11458 1.41149 0.85962 0.82224 0.78650 0.77898 1.19075 1.20576 1.20582 0.92138 0.92242 0.92964 0.91229 0.93230 0.91436 0.90539 0.89941 0.89028 0.82228 0.82630 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.19 37.15 0.34 -1.17 16 2 C -0.11 -1.49 3.13 -90.62 -0.28 -1.77 16 3 C -0.16 -2.59 7.66 37.15 0.28 -2.31 16 4 C 0.11 1.68 5.40 -4.03 -0.02 1.66 16 5 N -0.46 -8.66 2.69 -116.86 -0.31 -8.98 16 6 C -0.09 -1.59 11.59 -16.34 -0.19 -1.78 16 7 C -0.03 -0.50 11.84 -17.84 -0.21 -0.71 16 8 N -0.50 -12.29 10.01 -13.39 -0.13 -12.42 16 9 C 0.20 4.80 6.68 -88.52 -0.59 4.20 16 10 S 0.11 2.74 18.02 -107.50 -1.94 0.80 16 11 C -0.52 -15.12 9.36 30.88 0.29 -14.83 16 12 H 0.10 3.08 6.89 -52.49 -0.36 2.72 16 13 C 0.07 1.99 5.49 -17.48 -0.10 1.90 16 14 N -0.88 -25.27 13.22 55.48 0.73 -24.53 16 15 Si 0.93 21.88 29.55 -169.99 -5.02 16.85 16 16 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 19 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 20 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 21 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 22 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 1.16 7.52 -51.93 -0.39 0.77 16 25 H 0.08 1.54 5.31 -51.93 -0.28 1.27 16 26 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.09 1.40 7.90 -51.93 -0.41 0.99 16 28 H 0.16 2.11 8.06 -52.48 -0.42 1.68 16 29 H 0.16 2.58 8.06 -52.49 -0.42 2.16 16 30 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 LS Contribution 266.06 15.07 4.01 4.01 Total: -1.00 -31.73 266.06 -7.10 -38.83 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -3.96 Total: 0.26 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -0.48 Total: -14.81 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 0.28 Total: -45.93 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -1.94 Total: 0.80 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.73 -7.10 -38.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057489743.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.782 kcal (2) G-P(sol) polarization free energy of solvation -31.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds