Wall clock time and date at job start Mon Mar 30 2020 02:40:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.52995 * 109.47266 * 2 1
4 4 C 1.53008 * 109.46701 * 119.99604 * 2 1 3
5 5 N 1.46508 * 109.46700 * 175.00197 * 4 2 1
6 6 C 1.37322 * 126.49834 * 265.02162 * 5 4 2
7 7 C 1.34721 * 106.97543 * 179.97438 * 6 5 4
8 8 N 1.34037 * 108.34982 * 0.27076 * 7 6 5
9 9 C 1.31385 * 109.30065 * 359.55054 * 8 7 6
10 10 S 1.76200 * 125.81611 * 180.14906 * 9 8 7
11 11 C 1.76202 * 99.99681 * 0.34503 * 10 9 8
12 12 H 1.08001 * 119.99987 * 359.97438 * 11 10 9
13 13 C 1.38643 * 119.99911 * 179.97438 * 11 10 9
14 14 N 1.31650 * 120.00265 * 0.02562 * 13 11 10
15 15 Si 1.86806 * 120.00280 * 179.97438 * 13 11 10
16 16 H 1.48499 * 109.46718 * 0.02562 * 15 13 11
17 17 H 1.48501 * 109.47105 * 119.99729 * 15 13 11
18 18 H 1.48495 * 109.47227 * 240.00403 * 15 13 11
19 19 H 1.09001 * 109.47447 * 300.00275 * 1 2 3
20 20 H 1.09003 * 109.47211 * 60.00128 * 1 2 3
21 21 H 1.08998 * 109.47676 * 180.02562 * 1 2 3
22 22 H 1.08995 * 109.47554 * 239.99274 * 2 1 3
23 23 H 1.09002 * 109.47417 * 299.99980 * 3 2 1
24 24 H 1.09004 * 109.47533 * 59.99776 * 3 2 1
25 25 H 1.09002 * 109.47661 * 179.97438 * 3 2 1
26 26 H 1.08993 * 109.47020 * 55.00440 * 4 2 1
27 27 H 1.08998 * 109.47179 * 294.99455 * 4 2 1
28 28 H 1.08003 * 126.51388 * 0.02562 * 6 5 4
29 29 H 1.08002 * 125.82094 * 179.97438 * 7 6 5
30 30 H 0.97004 * 120.00425 * 179.97438 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0399 -0.7212 1.2494
5 7 3.5000 -0.8263 1.1907
6 6 4.2238 -1.8951 0.7223
7 6 5.5261 -1.5740 0.8487
8 7 5.6083 -0.3479 1.3839
9 6 4.3972 0.1180 1.5901
10 16 4.0009 1.6926 2.2746
11 6 5.6229 2.3302 2.5344
12 1 6.4853 1.7364 2.2698
13 6 5.7919 3.5941 3.0785
14 7 4.7406 4.3177 3.4015
15 14 7.5114 4.2699 3.3546
16 1 8.5140 3.2678 2.9122
17 1 7.6834 5.5202 2.5720
18 1 7.7037 4.5591 4.7984
19 1 -0.3634 0.5139 0.8899
20 1 -0.3634 0.5138 -0.8900
21 1 -0.3634 -1.0276 0.0005
22 1 1.8933 -0.5139 -0.8899
23 1 1.6767 1.9563 -0.8900
24 1 1.6766 1.9564 0.8900
25 1 3.1300 1.4425 0.0005
26 1 1.6053 -1.7197 1.2953
27 1 1.7516 -0.1582 2.1370
28 1 3.8249 -2.8176 0.3269
29 1 6.3613 -2.1999 0.5709
30 1 4.8588 5.2019 3.7825
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000057489743.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:40:18
Heat of formation + Delta-G solvation = 40.956089 kcal
Electronic energy + Delta-G solvation = -13564.234405 eV
Core-core repulsion = 11293.246531 eV
Total energy + Delta-G solvation = -2270.987873 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 226.083 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-40.97979 -36.27138 -32.52876 -31.90468 -28.70130 -26.90863 -25.98964 -25.50619
-20.92963 -20.69865 -19.92977 -17.82186 -16.57832 -15.01709 -14.82541 -14.75630
-14.39078 -13.49098 -13.33921 -13.06043 -12.79142 -12.24908 -12.13132 -11.81784
-11.17702 -11.05676 -11.01695 -10.85618 -10.73630 -10.57424 -10.04168 -9.27637
-9.06797 -8.84548 -8.66419 -8.25212 -6.42105 -6.32565 -4.01576 2.71120
2.84354 3.24458 3.30302 3.41322 3.68167 3.96857 4.14227 4.85988
4.94675 5.10374 5.14320 5.20727 5.40079 5.58391 5.60273 5.75264
5.89639 5.95577 6.04093 6.11758 6.30596 6.34899 6.52952 6.90339
6.97068 7.50550 7.71768 7.74521 8.53949 8.91258 9.20397 10.75984
Molecular weight = 226.08amu
Principal moments of inertia in cm(-1)
A = 0.032360 B = 0.009188 C = 0.007501
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 865.052761 B = 3046.852595 C = 3731.790426
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.109 4.109
3 C -0.157 4.157
4 C 0.114 3.886
5 N -0.458 5.458
6 C -0.091 4.091
7 C -0.025 4.025
8 N -0.499 5.499
9 C 0.205 3.795
10 S 0.108 5.892
11 C -0.524 4.524
12 H 0.103 0.897
13 C 0.071 3.929
14 N -0.883 5.883
15 Si 0.927 3.073
16 H -0.267 1.267
17 H -0.280 1.280
18 H -0.280 1.280
19 H 0.060 0.940
20 H 0.058 0.942
21 H 0.051 0.949
22 H 0.069 0.931
23 H 0.049 0.951
24 H 0.067 0.933
25 H 0.076 0.924
26 H 0.082 0.918
27 H 0.091 0.909
28 H 0.160 0.840
29 H 0.156 0.844
30 H 0.270 0.730
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.460 -8.133 -5.158 12.182
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.129 4.129
3 C -0.215 4.215
4 C -0.010 4.010
5 N -0.146 5.146
6 C -0.226 4.226
7 C -0.176 4.176
8 N -0.222 5.222
9 C -0.164 4.164
10 S 0.341 5.659
11 C -0.673 4.673
12 H 0.121 0.879
13 C -0.137 4.137
14 N -0.519 5.519
15 Si 0.753 3.247
16 H -0.191 1.191
17 H -0.206 1.206
18 H -0.206 1.206
19 H 0.079 0.921
20 H 0.078 0.922
21 H 0.070 0.930
22 H 0.088 0.912
23 H 0.068 0.932
24 H 0.086 0.914
25 H 0.095 0.905
26 H 0.101 0.899
27 H 0.110 0.890
28 H 0.178 0.822
29 H 0.174 0.826
30 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -7.972 -7.002 -4.635 11.578
hybrid contribution 1.418 -0.775 -0.329 1.650
sum -6.553 -7.777 -4.964 11.317
Atomic orbital electron populations
1.21781 0.94498 1.01401 1.02434 1.21523 0.95805 0.98175 0.97370
1.22189 1.03559 0.93891 1.01832 1.21863 0.77499 1.01670 0.99931
1.45502 1.06239 1.13603 1.49221 1.22413 0.92882 0.94704 1.12603
1.22202 0.94878 0.95340 1.05192 1.70811 1.20948 1.10092 1.20302
1.26778 0.86026 0.99656 1.03900 1.83378 1.13092 0.98032 1.71362
1.23278 0.92731 1.03876 1.47421 0.87912 1.25033 0.98766 0.95550
0.94340 1.69974 1.29311 1.11458 1.41149 0.85962 0.82224 0.78650
0.77898 1.19075 1.20576 1.20582 0.92138 0.92242 0.92964 0.91229
0.93230 0.91436 0.90539 0.89941 0.89028 0.82228 0.82630 0.92049
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.51 9.19 37.15 0.34 -1.17 16
2 C -0.11 -1.49 3.13 -90.62 -0.28 -1.77 16
3 C -0.16 -2.59 7.66 37.15 0.28 -2.31 16
4 C 0.11 1.68 5.40 -4.03 -0.02 1.66 16
5 N -0.46 -8.66 2.69 -116.86 -0.31 -8.98 16
6 C -0.09 -1.59 11.59 -16.34 -0.19 -1.78 16
7 C -0.03 -0.50 11.84 -17.84 -0.21 -0.71 16
8 N -0.50 -12.29 10.01 -13.39 -0.13 -12.42 16
9 C 0.20 4.80 6.68 -88.52 -0.59 4.20 16
10 S 0.11 2.74 18.02 -107.50 -1.94 0.80 16
11 C -0.52 -15.12 9.36 30.88 0.29 -14.83 16
12 H 0.10 3.08 6.89 -52.49 -0.36 2.72 16
13 C 0.07 1.99 5.49 -17.48 -0.10 1.90 16
14 N -0.88 -25.27 13.22 55.48 0.73 -24.53 16
15 Si 0.93 21.88 29.55 -169.99 -5.02 16.85 16
16 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16
17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
18 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16
19 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
20 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16
21 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16
22 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16
23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16
24 H 0.07 1.16 7.52 -51.93 -0.39 0.77 16
25 H 0.08 1.54 5.31 -51.93 -0.28 1.27 16
26 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16
27 H 0.09 1.40 7.90 -51.93 -0.41 0.99 16
28 H 0.16 2.11 8.06 -52.48 -0.42 1.68 16
29 H 0.16 2.58 8.06 -52.49 -0.42 2.16 16
30 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16
LS Contribution 266.06 15.07 4.01 4.01
Total: -1.00 -31.73 266.06 -7.10 -38.83
By element:
Atomic # 1 Polarization: 4.21 SS G_CDS: -3.96 Total: 0.26 kcal
Atomic # 6 Polarization: -14.34 SS G_CDS: -0.48 Total: -14.81 kcal
Atomic # 7 Polarization: -46.22 SS G_CDS: 0.28 Total: -45.93 kcal
Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal
Atomic # 16 Polarization: 2.74 SS G_CDS: -1.94 Total: 0.80 kcal
Total LS contribution 4.01 Total: 4.01 kcal
Total: -31.73 -7.10 -38.83 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000057489743.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.782 kcal
(2) G-P(sol) polarization free energy of solvation -31.727 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.055 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.826 kcal
(6) G-S(sol) free energy of system = (1) + (5) 40.956 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds