Wall clock time and date at job start Mon Mar 30 2020 02:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47266 * 2 1 4 4 C 1.53008 * 109.46701 * 119.99604 * 2 1 3 5 5 N 1.46508 * 109.46700 * 175.00197 * 4 2 1 6 6 C 1.37322 * 126.49834 * 265.02162 * 5 4 2 7 7 C 1.34721 * 106.97543 * 179.97438 * 6 5 4 8 8 N 1.34037 * 108.34982 * 0.27076 * 7 6 5 9 9 C 1.31385 * 109.30065 * 359.55054 * 8 7 6 10 10 S 1.76200 * 125.81611 * 180.14906 * 9 8 7 11 11 C 1.76202 * 99.99681 * 0.34503 * 10 9 8 12 12 H 1.08001 * 119.99987 * 359.97438 * 11 10 9 13 13 C 1.38643 * 119.99911 * 179.97438 * 11 10 9 14 14 N 1.31650 * 120.00265 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 120.00280 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46718 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47105 * 119.99729 * 15 13 11 18 18 H 1.48495 * 109.47227 * 240.00403 * 15 13 11 19 19 H 1.09001 * 109.47447 * 300.00275 * 1 2 3 20 20 H 1.09003 * 109.47211 * 60.00128 * 1 2 3 21 21 H 1.08998 * 109.47676 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47554 * 239.99274 * 2 1 3 23 23 H 1.09002 * 109.47417 * 299.99980 * 3 2 1 24 24 H 1.09004 * 109.47533 * 59.99776 * 3 2 1 25 25 H 1.09002 * 109.47661 * 179.97438 * 3 2 1 26 26 H 1.08993 * 109.47020 * 55.00440 * 4 2 1 27 27 H 1.08998 * 109.47179 * 294.99455 * 4 2 1 28 28 H 1.08003 * 126.51388 * 0.02562 * 6 5 4 29 29 H 1.08002 * 125.82094 * 179.97438 * 7 6 5 30 30 H 0.97004 * 120.00425 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 3.5000 -0.8263 1.1907 6 6 4.2238 -1.8951 0.7223 7 6 5.5261 -1.5740 0.8487 8 7 5.6083 -0.3479 1.3839 9 6 4.3972 0.1180 1.5901 10 16 4.0009 1.6926 2.2746 11 6 5.6229 2.3302 2.5344 12 1 6.4853 1.7364 2.2698 13 6 5.7919 3.5941 3.0785 14 7 4.7406 4.3177 3.4015 15 14 7.5114 4.2699 3.3546 16 1 8.5140 3.2678 2.9122 17 1 7.6834 5.5202 2.5720 18 1 7.7037 4.5591 4.7984 19 1 -0.3634 0.5139 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8899 23 1 1.6767 1.9563 -0.8900 24 1 1.6766 1.9564 0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6053 -1.7197 1.2953 27 1 1.7516 -0.1582 2.1370 28 1 3.8249 -2.8176 0.3269 29 1 6.3613 -2.1999 0.5709 30 1 4.8588 5.2019 3.7825 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057489743.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:17 Heat of formation + Delta-G solvation = 21.483702 kcal Electronic energy + Delta-G solvation = -13565.078791 eV Core-core repulsion = 11293.246531 eV Total energy + Delta-G solvation = -2271.832259 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.53977 -37.48096 -34.65833 -33.34405 -30.24726 -28.11624 -27.63508 -27.21061 -22.47955 -22.22232 -21.18614 -19.67734 -18.18761 -16.90263 -16.42406 -16.15109 -15.84331 -15.03368 -14.84968 -14.37345 -14.36397 -13.59288 -13.20966 -13.16311 -12.97881 -12.92745 -12.75917 -12.32285 -11.94892 -11.88753 -11.71865 -11.25183 -10.81296 -10.60551 -10.38983 -9.93558 -8.44189 -8.30711 -6.14197 1.09029 1.18116 1.37884 1.38398 1.55165 2.17648 2.25524 2.33171 2.95028 3.19256 3.73278 3.84574 4.04032 4.23705 4.36700 4.49419 4.57975 4.73932 4.82666 4.84679 5.02377 5.07547 5.21054 5.43181 5.46467 5.53566 5.56347 5.97800 6.28129 6.31511 7.04154 7.31368 8.65514 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.032360 B = 0.009188 C = 0.007501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.052761 B = 3046.852595 C = 3731.790426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.100 4.100 3 C -0.155 4.155 4 C 0.103 3.897 5 N -0.449 5.449 6 C -0.054 4.054 7 C -0.061 4.061 8 N -0.545 5.545 9 C 0.174 3.826 10 S 0.086 5.914 11 C -0.552 4.552 12 H 0.080 0.920 13 C 0.026 3.974 14 N -0.908 5.908 15 Si 0.990 3.010 16 H -0.274 1.274 17 H -0.267 1.267 18 H -0.266 1.266 19 H 0.058 0.942 20 H 0.067 0.933 21 H 0.078 0.922 22 H 0.075 0.925 23 H 0.062 0.938 24 H 0.052 0.948 25 H 0.036 0.964 26 H 0.127 0.873 27 H 0.081 0.919 28 H 0.216 0.784 29 H 0.182 0.818 30 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.547 -9.943 -5.992 14.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.119 4.119 3 C -0.213 4.213 4 C -0.018 4.018 5 N -0.135 5.135 6 C -0.189 4.189 7 C -0.211 4.211 8 N -0.268 5.268 9 C -0.196 4.196 10 S 0.319 5.681 11 C -0.700 4.700 12 H 0.098 0.902 13 C -0.180 4.180 14 N -0.545 5.545 15 Si 0.813 3.187 16 H -0.198 1.198 17 H -0.192 1.192 18 H -0.191 1.191 19 H 0.077 0.923 20 H 0.086 0.914 21 H 0.097 0.903 22 H 0.093 0.907 23 H 0.081 0.919 24 H 0.071 0.929 25 H 0.055 0.945 26 H 0.145 0.855 27 H 0.099 0.901 28 H 0.233 0.767 29 H 0.199 0.801 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.095 -8.820 -5.474 13.801 hybrid contribution 1.704 -0.383 -0.162 1.754 sum -7.390 -9.203 -5.636 13.080 Atomic orbital electron populations 1.21735 0.91589 1.03251 1.02819 1.21463 0.98019 0.95581 0.96864 1.22099 1.00888 0.96574 1.01741 1.22279 0.75119 1.04267 1.00144 1.45798 1.07660 1.12663 1.47357 1.23255 0.91902 0.95090 1.08700 1.22777 0.97340 0.94504 1.06432 1.70671 1.22438 1.12531 1.21196 1.26195 0.87061 0.99815 1.06486 1.82985 1.11609 1.00485 1.73053 1.23399 0.93797 1.04608 1.48246 0.90175 1.25885 1.02724 0.95540 0.93816 1.70041 1.31109 1.11902 1.41489 0.85021 0.77217 0.77964 0.78510 1.19834 1.19168 1.19141 0.92317 0.91416 0.90342 0.90654 0.91914 0.92913 0.94538 0.85530 0.90100 0.76699 0.80105 0.91451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.19 71.98 0.66 -1.73 16 2 C -0.10 -2.48 3.13 -10.79 -0.03 -2.51 16 3 C -0.16 -5.14 7.66 71.98 0.55 -4.59 16 4 C 0.10 2.77 5.40 86.38 0.47 3.24 16 5 N -0.45 -16.20 2.69 -523.64 -1.41 -17.61 16 6 C -0.05 -1.69 11.59 83.03 0.96 -0.73 16 7 C -0.06 -2.34 11.84 83.55 0.99 -1.35 16 8 N -0.55 -27.34 10.01 -196.27 -1.96 -29.30 16 9 C 0.17 8.29 6.68 179.62 1.20 9.49 16 10 S 0.09 4.54 18.02 -56.49 -1.02 3.53 16 11 C -0.55 -33.25 9.36 67.92 0.64 -32.62 16 12 H 0.08 5.06 6.89 -2.91 -0.02 5.04 16 13 C 0.03 1.47 5.49 84.82 0.47 1.93 16 14 N -0.91 -53.20 13.22 21.62 0.29 -52.91 16 15 Si 0.99 45.76 29.55 68.60 2.03 47.78 16 16 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 17 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 18 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 19 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 20 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 21 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 22 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.05 1.86 7.52 -2.38 -0.02 1.84 16 25 H 0.04 1.51 5.31 -2.39 -0.01 1.49 16 26 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.08 2.39 7.90 -2.39 -0.02 2.37 16 28 H 0.22 4.27 8.06 -2.91 -0.02 4.25 16 29 H 0.18 5.69 8.06 -2.91 -0.02 5.66 16 30 H 0.28 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -72.43 266.06 4.94 -67.49 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: 1.12 Total: 9.87 kcal Atomic # 6 Polarization: -34.76 SS G_CDS: 5.90 Total: -28.86 kcal Atomic # 7 Polarization: -96.73 SS G_CDS: -3.09 Total: -99.82 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Atomic # 16 Polarization: 4.54 SS G_CDS: -1.02 Total: 3.53 kcal Total: -72.43 4.94 -67.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057489743.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.979 kcal (2) G-P(sol) polarization free energy of solvation -72.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds