Wall clock time and date at job start Mon Mar 30 2020 02:40:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.52995 * 109.47266 * 2 1
4 4 C 1.53008 * 109.46701 * 119.99604 * 2 1 3
5 5 N 1.46508 * 109.46700 * 175.00197 * 4 2 1
6 6 C 1.37322 * 126.49834 * 265.02162 * 5 4 2
7 7 C 1.34721 * 106.97543 * 179.97438 * 6 5 4
8 8 N 1.34037 * 108.34982 * 0.27076 * 7 6 5
9 9 C 1.31385 * 109.30065 * 359.55054 * 8 7 6
10 10 S 1.76200 * 125.81611 * 180.14906 * 9 8 7
11 11 C 1.76202 * 99.99681 * 0.34503 * 10 9 8
12 12 H 1.08001 * 119.99987 * 359.97438 * 11 10 9
13 13 C 1.38643 * 119.99911 * 179.97438 * 11 10 9
14 14 N 1.31650 * 120.00265 * 0.02562 * 13 11 10
15 15 Si 1.86806 * 120.00280 * 179.97438 * 13 11 10
16 16 H 1.48499 * 109.46718 * 0.02562 * 15 13 11
17 17 H 1.48501 * 109.47105 * 119.99729 * 15 13 11
18 18 H 1.48495 * 109.47227 * 240.00403 * 15 13 11
19 19 H 1.09001 * 109.47447 * 300.00275 * 1 2 3
20 20 H 1.09003 * 109.47211 * 60.00128 * 1 2 3
21 21 H 1.08998 * 109.47676 * 180.02562 * 1 2 3
22 22 H 1.08995 * 109.47554 * 239.99274 * 2 1 3
23 23 H 1.09002 * 109.47417 * 299.99980 * 3 2 1
24 24 H 1.09004 * 109.47533 * 59.99776 * 3 2 1
25 25 H 1.09002 * 109.47661 * 179.97438 * 3 2 1
26 26 H 1.08993 * 109.47020 * 55.00440 * 4 2 1
27 27 H 1.08998 * 109.47179 * 294.99455 * 4 2 1
28 28 H 1.08003 * 126.51388 * 0.02562 * 6 5 4
29 29 H 1.08002 * 125.82094 * 179.97438 * 7 6 5
30 30 H 0.97004 * 120.00425 * 179.97438 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0399 -0.7212 1.2494
5 7 3.5000 -0.8263 1.1907
6 6 4.2238 -1.8951 0.7223
7 6 5.5261 -1.5740 0.8487
8 7 5.6083 -0.3479 1.3839
9 6 4.3972 0.1180 1.5901
10 16 4.0009 1.6926 2.2746
11 6 5.6229 2.3302 2.5344
12 1 6.4853 1.7364 2.2698
13 6 5.7919 3.5941 3.0785
14 7 4.7406 4.3177 3.4015
15 14 7.5114 4.2699 3.3546
16 1 8.5140 3.2678 2.9122
17 1 7.6834 5.5202 2.5720
18 1 7.7037 4.5591 4.7984
19 1 -0.3634 0.5139 0.8899
20 1 -0.3634 0.5138 -0.8900
21 1 -0.3634 -1.0276 0.0005
22 1 1.8933 -0.5139 -0.8899
23 1 1.6767 1.9563 -0.8900
24 1 1.6766 1.9564 0.8900
25 1 3.1300 1.4425 0.0005
26 1 1.6053 -1.7197 1.2953
27 1 1.7516 -0.1582 2.1370
28 1 3.8249 -2.8176 0.3269
29 1 6.3613 -2.1999 0.5709
30 1 4.8588 5.2019 3.7825
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000057489743.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:40:17
Heat of formation + Delta-G solvation = 21.483702 kcal
Electronic energy + Delta-G solvation = -13565.078791 eV
Core-core repulsion = 11293.246531 eV
Total energy + Delta-G solvation = -2271.832259 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 226.083 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-42.53977 -37.48096 -34.65833 -33.34405 -30.24726 -28.11624 -27.63508 -27.21061
-22.47955 -22.22232 -21.18614 -19.67734 -18.18761 -16.90263 -16.42406 -16.15109
-15.84331 -15.03368 -14.84968 -14.37345 -14.36397 -13.59288 -13.20966 -13.16311
-12.97881 -12.92745 -12.75917 -12.32285 -11.94892 -11.88753 -11.71865 -11.25183
-10.81296 -10.60551 -10.38983 -9.93558 -8.44189 -8.30711 -6.14197 1.09029
1.18116 1.37884 1.38398 1.55165 2.17648 2.25524 2.33171 2.95028
3.19256 3.73278 3.84574 4.04032 4.23705 4.36700 4.49419 4.57975
4.73932 4.82666 4.84679 5.02377 5.07547 5.21054 5.43181 5.46467
5.53566 5.56347 5.97800 6.28129 6.31511 7.04154 7.31368 8.65514
Molecular weight = 226.08amu
Principal moments of inertia in cm(-1)
A = 0.032360 B = 0.009188 C = 0.007501
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 865.052761 B = 3046.852595 C = 3731.790426
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.100 4.100
3 C -0.155 4.155
4 C 0.103 3.897
5 N -0.449 5.449
6 C -0.054 4.054
7 C -0.061 4.061
8 N -0.545 5.545
9 C 0.174 3.826
10 S 0.086 5.914
11 C -0.552 4.552
12 H 0.080 0.920
13 C 0.026 3.974
14 N -0.908 5.908
15 Si 0.990 3.010
16 H -0.274 1.274
17 H -0.267 1.267
18 H -0.266 1.266
19 H 0.058 0.942
20 H 0.067 0.933
21 H 0.078 0.922
22 H 0.075 0.925
23 H 0.062 0.938
24 H 0.052 0.948
25 H 0.036 0.964
26 H 0.127 0.873
27 H 0.081 0.919
28 H 0.216 0.784
29 H 0.182 0.818
30 H 0.276 0.724
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.547 -9.943 -5.992 14.416
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.119 4.119
3 C -0.213 4.213
4 C -0.018 4.018
5 N -0.135 5.135
6 C -0.189 4.189
7 C -0.211 4.211
8 N -0.268 5.268
9 C -0.196 4.196
10 S 0.319 5.681
11 C -0.700 4.700
12 H 0.098 0.902
13 C -0.180 4.180
14 N -0.545 5.545
15 Si 0.813 3.187
16 H -0.198 1.198
17 H -0.192 1.192
18 H -0.191 1.191
19 H 0.077 0.923
20 H 0.086 0.914
21 H 0.097 0.903
22 H 0.093 0.907
23 H 0.081 0.919
24 H 0.071 0.929
25 H 0.055 0.945
26 H 0.145 0.855
27 H 0.099 0.901
28 H 0.233 0.767
29 H 0.199 0.801
30 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -9.095 -8.820 -5.474 13.801
hybrid contribution 1.704 -0.383 -0.162 1.754
sum -7.390 -9.203 -5.636 13.080
Atomic orbital electron populations
1.21735 0.91589 1.03251 1.02819 1.21463 0.98019 0.95581 0.96864
1.22099 1.00888 0.96574 1.01741 1.22279 0.75119 1.04267 1.00144
1.45798 1.07660 1.12663 1.47357 1.23255 0.91902 0.95090 1.08700
1.22777 0.97340 0.94504 1.06432 1.70671 1.22438 1.12531 1.21196
1.26195 0.87061 0.99815 1.06486 1.82985 1.11609 1.00485 1.73053
1.23399 0.93797 1.04608 1.48246 0.90175 1.25885 1.02724 0.95540
0.93816 1.70041 1.31109 1.11902 1.41489 0.85021 0.77217 0.77964
0.78510 1.19834 1.19168 1.19141 0.92317 0.91416 0.90342 0.90654
0.91914 0.92913 0.94538 0.85530 0.90100 0.76699 0.80105 0.91451
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.39 9.19 71.98 0.66 -1.73 16
2 C -0.10 -2.48 3.13 -10.79 -0.03 -2.51 16
3 C -0.16 -5.14 7.66 71.98 0.55 -4.59 16
4 C 0.10 2.77 5.40 86.38 0.47 3.24 16
5 N -0.45 -16.20 2.69 -523.64 -1.41 -17.61 16
6 C -0.05 -1.69 11.59 83.03 0.96 -0.73 16
7 C -0.06 -2.34 11.84 83.55 0.99 -1.35 16
8 N -0.55 -27.34 10.01 -196.27 -1.96 -29.30 16
9 C 0.17 8.29 6.68 179.62 1.20 9.49 16
10 S 0.09 4.54 18.02 -56.49 -1.02 3.53 16
11 C -0.55 -33.25 9.36 67.92 0.64 -32.62 16
12 H 0.08 5.06 6.89 -2.91 -0.02 5.04 16
13 C 0.03 1.47 5.49 84.82 0.47 1.93 16
14 N -0.91 -53.20 13.22 21.62 0.29 -52.91 16
15 Si 0.99 45.76 29.55 68.60 2.03 47.78 16
16 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16
17 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16
18 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16
19 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16
20 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16
21 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16
22 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16
23 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16
24 H 0.05 1.86 7.52 -2.38 -0.02 1.84 16
25 H 0.04 1.51 5.31 -2.39 -0.01 1.49 16
26 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16
27 H 0.08 2.39 7.90 -2.39 -0.02 2.37 16
28 H 0.22 4.27 8.06 -2.91 -0.02 4.25 16
29 H 0.18 5.69 8.06 -2.91 -0.02 5.66 16
30 H 0.28 14.93 8.31 -92.71 -0.77 14.16 16
Total: -1.00 -72.43 266.06 4.94 -67.49
By element:
Atomic # 1 Polarization: 8.76 SS G_CDS: 1.12 Total: 9.87 kcal
Atomic # 6 Polarization: -34.76 SS G_CDS: 5.90 Total: -28.86 kcal
Atomic # 7 Polarization: -96.73 SS G_CDS: -3.09 Total: -99.82 kcal
Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal
Atomic # 16 Polarization: 4.54 SS G_CDS: -1.02 Total: 3.53 kcal
Total: -72.43 4.94 -67.49 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000057489743.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.979 kcal
(2) G-P(sol) polarization free energy of solvation -72.432 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.546 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.937 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.495 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.484 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds