Wall clock time and date at job start Mon Mar 30 2020 02:57:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09001 * 109.47561 * 2 1
4 4 C 1.50693 * 109.47180 * 120.00690 * 2 1 3
5 5 H 1.08001 * 120.00493 * 114.35869 * 4 2 1
6 6 C 1.37886 * 119.99492 * 294.35769 * 4 2 1
7 7 N 1.31519 * 119.99577 * 156.80148 * 6 4 2
8 8 Si 1.86798 * 120.00311 * 336.79941 * 6 4 2
9 9 H 1.48492 * 109.47043 * 180.02562 * 8 6 4
10 10 H 1.48498 * 109.47100 * 300.00114 * 8 6 4
11 11 H 1.48499 * 109.46985 * 60.00044 * 8 6 4
12 12 N 1.46903 * 109.46882 * 240.00434 * 2 1 3
13 13 C 1.46897 * 111.00362 * 85.00150 * 12 2 1
14 14 H 1.09004 * 109.46826 * 324.99775 * 13 12 2
15 15 C 1.52995 * 109.47061 * 84.99719 * 13 12 2
16 16 C 1.50700 * 109.47141 * 205.00038 * 13 12 2
17 17 N 1.29031 * 124.91168 * 135.00129 * 16 13 12
18 18 C 1.31785 * 117.12144 * 179.97438 * 17 16 13
19 19 C 1.33645 * 114.49702 * 359.97438 * 18 17 16
20 20 S 1.70973 * 124.91865 * 314.69285 * 16 13 12
21 21 H 1.08998 * 109.47689 * 173.06148 * 1 2 3
22 22 H 1.09000 * 109.46997 * 293.06381 * 1 2 3
23 23 H 1.09002 * 109.47001 * 53.06167 * 1 2 3
24 24 H 0.97000 * 120.00103 * 354.92554 * 7 6 4
25 25 H 1.00899 * 110.99744 * 208.95878 * 12 2 1
26 26 H 1.09005 * 109.47003 * 180.02562 * 15 13 12
27 27 H 1.08998 * 109.47304 * 300.00163 * 15 13 12
28 28 H 1.09004 * 109.47254 * 60.00319 * 15 13 12
29 29 H 1.07996 * 122.74905 * 180.02562 * 18 17 16
30 30 H 1.08001 * 126.03208 * 179.97438 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7105 1.2303
5 1 2.5760 -1.6387 1.1338
6 6 1.7977 -0.1756 2.4793
7 7 1.8063 -0.9533 3.5399
8 14 1.4679 1.6537 2.6651
9 1 1.2488 1.9740 4.0984
10 1 2.6346 2.4208 2.1596
11 1 0.2587 2.0203 1.8850
12 7 2.0196 -0.6924 -1.1995
13 6 2.0824 0.2227 -2.3469
14 1 1.2576 0.9330 -2.2907
15 6 3.4110 0.9809 -2.3224
16 6 1.9785 -0.5675 -3.6259
17 7 1.2352 -0.2501 -4.6317
18 6 1.2624 -1.0534 -5.6761
19 6 2.0743 -2.1067 -5.5440
20 16 2.8341 -2.0102 -3.9573
21 1 -0.3634 -1.0201 -0.1241
22 1 -0.3633 0.4026 0.9455
23 1 -0.3633 0.6176 -0.8214
24 1 1.9041 -1.9128 3.4369
25 1 2.9172 -1.1205 -1.0288
26 1 3.4575 1.6603 -3.1735
27 1 3.4862 1.5524 -1.3973
28 1 4.2359 0.2705 -2.3786
29 1 0.6773 -0.8747 -6.5661
30 1 2.2381 -2.8790 -6.2810
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000070621551.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:57:59
Heat of formation + Delta-G solvation = 18.879348 kcal
Electronic energy + Delta-G solvation = -13500.281121 eV
Core-core repulsion = 11228.335928 eV
Total energy + Delta-G solvation = -2271.945193 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 226.083 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-40.61942 -38.44797 -35.23339 -33.03309 -30.62456 -28.98110 -26.91805 -26.30553
-23.29099 -21.61605 -20.82985 -19.71914 -18.69656 -16.87873 -16.52788 -15.99621
-15.46159 -15.26417 -15.04279 -14.57475 -14.20016 -13.95653 -13.68635 -13.24004
-12.90150 -12.70801 -12.48265 -12.32052 -12.17887 -11.92749 -11.68294 -11.05022
-10.58786 -10.41101 -10.31056 -9.78815 -9.29678 -8.74421 -6.34068 -0.17808
0.51283 0.93933 1.48981 1.53199 1.72800 1.92090 2.50215 2.96888
3.02530 3.66141 4.06617 4.12605 4.28499 4.42923 4.55541 4.60775
4.70040 4.76399 4.83999 4.94881 5.07919 5.13669 5.27698 5.56254
5.75672 6.05634 6.21876 6.58073 6.74062 6.83954 7.40296 8.61899
Molecular weight = 226.08amu
Principal moments of inertia in cm(-1)
A = 0.048155 B = 0.007082 C = 0.006840
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 581.312978 B = 3952.737942 C = 4092.356499
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C 0.199 3.801
3 H 0.007 0.993
4 C -0.613 4.613
5 H 0.028 0.972
6 C -0.008 4.008
7 N -0.929 5.929
8 Si 1.074 2.926
9 H -0.289 1.289
10 H -0.263 1.263
11 H -0.251 1.251
12 N -0.678 5.678
13 C 0.151 3.849
14 H 0.092 0.908
15 C -0.168 4.168
16 C 0.058 3.942
17 N -0.509 5.509
18 C 0.021 3.979
19 C -0.263 4.263
20 S 0.142 5.858
21 H 0.036 0.964
22 H 0.042 0.958
23 H 0.043 0.957
24 H 0.255 0.745
25 H 0.339 0.661
26 H 0.075 0.925
27 H 0.065 0.935
28 H 0.066 0.934
29 H 0.199 0.801
30 H 0.208 0.792
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.125 1.720 -17.562 17.773
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C 0.089 3.911
3 H 0.025 0.975
4 C -0.650 4.650
5 H 0.046 0.954
6 C -0.208 4.208
7 N -0.563 5.563
8 Si 0.895 3.105
9 H -0.215 1.215
10 H -0.188 1.188
11 H -0.175 1.175
12 N -0.310 5.310
13 C 0.037 3.963
14 H 0.110 0.890
15 C -0.228 4.228
16 C -0.220 4.220
17 N -0.224 5.224
18 C -0.130 4.130
19 C -0.402 4.402
20 S 0.395 5.605
21 H 0.055 0.945
22 H 0.061 0.939
23 H 0.062 0.938
24 H 0.064 0.936
25 H 0.158 0.842
26 H 0.094 0.906
27 H 0.084 0.916
28 H 0.085 0.915
29 H 0.216 0.784
30 H 0.225 0.775
Dipole moment (debyes) X Y Z Total
from point charges 1.638 2.508 -16.022 16.300
hybrid contribution 0.470 -1.122 -1.268 1.757
sum 2.108 1.386 -17.290 17.473
Atomic orbital electron populations
1.21991 0.97661 0.99956 0.99245 1.19230 0.92398 0.92486 0.86944
0.97518 1.22182 1.40217 1.09697 0.92930 0.95392 1.26998 0.92687
1.09245 0.91876 1.70966 1.46530 1.05768 1.33040 0.83674 0.79001
0.71388 0.76442 1.21504 1.18775 1.17508 1.60510 1.33022 1.32642
1.04799 1.20026 0.99369 0.91752 0.85163 0.89047 1.22429 0.95939
1.01181 1.03239 1.27073 0.97694 0.98580 0.98653 1.66262 1.21727
1.33106 1.01336 1.22208 1.01090 0.91462 0.98227 1.27490 1.05376
1.06121 1.01188 1.84007 1.42614 1.23041 1.10826 0.94483 0.93867
0.93837 0.93579 0.84236 0.90567 0.91555 0.91529 0.78389 0.77511
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.79 9.09 71.98 0.65 -5.13 16
2 C 0.20 9.10 2.01 44.17 0.09 9.19 16
3 H 0.01 0.32 5.69 -2.39 -0.01 0.31 16
4 C -0.61 -33.78 8.77 25.60 0.22 -33.55 16
5 H 0.03 1.69 7.92 -2.91 -0.02 1.67 16
6 C -0.01 -0.43 5.19 84.66 0.44 0.00 16
7 N -0.93 -57.09 13.70 21.45 0.29 -56.79 16
8 Si 1.07 48.64 26.45 68.60 1.81 50.45 16
9 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16
10 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16
11 H -0.25 -10.29 6.16 99.48 0.61 -9.68 16
12 N -0.68 -27.14 5.85 -477.17 -2.79 -29.93 16
13 C 0.15 5.08 2.91 44.17 0.13 5.21 16
14 H 0.09 3.26 7.18 -2.38 -0.02 3.24 16
15 C -0.17 -4.82 9.13 71.98 0.66 -4.16 16
16 C 0.06 1.82 6.31 88.52 0.56 2.38 16
17 N -0.51 -15.86 10.54 -191.44 -2.02 -17.88 16
18 C 0.02 0.49 11.35 83.66 0.95 1.44 16
19 C -0.26 -5.54 11.37 66.78 0.76 -4.78 16
20 S 0.14 3.73 22.97 -56.49 -1.30 2.43 16
21 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16
22 H 0.04 1.95 5.48 -2.39 -0.01 1.94 16
23 H 0.04 1.70 7.53 -2.39 -0.02 1.68 16
24 H 0.26 15.95 8.73 -92.71 -0.81 15.14 16
25 H 0.34 13.58 8.00 -89.69 -0.72 12.87 16
26 H 0.08 1.91 8.14 -2.38 -0.02 1.90 16
27 H 0.07 1.99 7.43 -2.39 -0.02 1.97 16
28 H 0.07 1.78 8.13 -2.38 -0.02 1.76 16
29 H 0.20 3.39 8.06 -2.91 -0.02 3.36 16
30 H 0.21 2.74 8.06 -2.91 -0.02 2.72 16
Total: -1.00 -64.14 264.47 0.75 -63.39
By element:
Atomic # 1 Polarization: 17.44 SS G_CDS: 0.29 Total: 17.73 kcal
Atomic # 6 Polarization: -33.86 SS G_CDS: 4.46 Total: -29.40 kcal
Atomic # 7 Polarization: -100.10 SS G_CDS: -4.51 Total: -104.61 kcal
Atomic # 14 Polarization: 48.64 SS G_CDS: 1.81 Total: 50.45 kcal
Atomic # 16 Polarization: 3.73 SS G_CDS: -1.30 Total: 2.43 kcal
Total: -64.14 0.75 -63.39 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000070621551.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 82.268 kcal
(2) G-P(sol) polarization free energy of solvation -64.142 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.126 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.754 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.389 kcal
(6) G-S(sol) free energy of system = (1) + (5) 18.879 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds