Wall clock time and date at job start Mon Mar 30 2020 03:00:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 N 1.46905 * 109.47113 * 2 1
4 4 C 1.46891 * 110.99919 * 180.02562 * 3 2 1
5 5 H 1.09005 * 109.47434 * 35.00394 * 4 3 2
6 6 C 1.52998 * 109.47428 * 275.00342 * 4 3 2
7 7 C 1.50702 * 109.47145 * 155.00082 * 4 3 2
8 8 C 1.34855 * 122.10698 * 204.99691 * 7 4 3
9 9 S 1.71041 * 109.23630 * 180.02562 * 8 7 4
10 10 C 1.76087 * 90.38993 * 0.02562 * 9 8 7
11 11 C 1.39908 * 125.55468 * 179.97438 * 10 9 8
12 12 H 1.08002 * 120.00278 * 180.02562 * 11 10 9
13 13 C 1.40247 * 119.99935 * 359.74749 * 11 10 9
14 14 N 1.30694 * 120.00119 * 0.27850 * 13 11 10
15 15 Si 1.86803 * 119.99956 * 180.27682 * 13 11 10
16 16 H 1.48496 * 109.47187 * 359.97438 * 15 13 11
17 17 H 1.48502 * 109.47194 * 120.00582 * 15 13 11
18 18 H 1.48506 * 109.46902 * 240.00350 * 15 13 11
19 19 N 1.30463 * 122.10007 * 25.30011 * 7 4 3
20 20 H 1.08996 * 109.46895 * 180.02562 * 1 2 3
21 21 H 1.09001 * 109.46658 * 299.99528 * 1 2 3
22 22 H 1.08995 * 109.47626 * 59.99561 * 1 2 3
23 23 H 1.09001 * 109.46658 * 240.00472 * 2 1 3
24 24 H 1.08995 * 109.47626 * 120.00439 * 2 1 3
25 25 H 1.00907 * 110.99545 * 56.04979 * 3 2 1
26 26 H 1.08999 * 109.46957 * 299.99983 * 6 4 3
27 27 H 1.08994 * 109.47331 * 59.99707 * 6 4 3
28 28 H 1.08996 * 109.47484 * 180.02562 * 6 4 3
29 29 H 1.07995 * 125.38164 * 0.02891 * 8 7 4
30 30 H 0.97005 * 120.00041 * 179.97438 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3850 0.0000
4 6 3.4881 1.4242 -0.0006
5 1 3.8736 0.5925 -0.5904
6 6 4.0020 1.3118 1.4361
7 6 3.9557 2.7250 -0.6011
8 6 5.1675 2.8531 -1.1788
9 16 5.3551 4.4561 -1.7451
10 6 3.7483 4.8662 -1.1528
11 6 3.1381 6.1207 -1.2583
12 1 2.1453 6.2734 -0.8616
13 6 3.8180 7.1817 -1.8739
14 7 5.0195 6.9970 -2.3540
15 14 3.0063 8.8588 -2.0077
16 1 1.6561 8.8058 -1.3921
17 1 3.8347 9.8676 -1.2996
18 1 2.8828 9.2362 -3.4387
19 7 3.2159 3.7995 -0.5895
20 1 -0.3633 -1.0276 0.0005
21 1 -0.3633 0.5138 0.8901
22 1 -0.3634 0.5139 -0.8899
23 1 1.8933 -0.5138 -0.8901
24 1 1.8935 -0.5139 0.8899
25 1 1.6442 1.9013 0.7815
26 1 3.6166 2.1435 2.0259
27 1 3.6638 0.3711 1.8704
28 1 5.0915 1.3414 1.4357
29 1 5.9031 2.0677 -1.2696
30 1 5.4896 7.7308 -2.7801
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000070841308.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:00:41
Heat of formation + Delta-G solvation = 11.091436 kcal
Electronic energy + Delta-G solvation = -13323.466698 eV
Core-core repulsion = 11051.183796 eV
Total energy + Delta-G solvation = -2272.282902 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 226.083 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-38.12473 -35.93530 -34.00558 -31.76523 -28.85883 -27.49689 -26.12915 -23.43320
-21.62744 -21.16257 -17.91361 -17.54906 -15.65649 -15.22876 -15.09489 -14.38546
-13.96337 -13.41426 -12.93293 -12.73546 -12.40585 -12.11280 -11.84835 -11.67177
-11.45579 -11.27678 -11.17523 -10.88150 -10.70618 -10.43658 -10.27508 -9.56269
-9.29785 -7.80298 -7.71725 -7.56224 -7.00121 -6.98536 -4.63687 2.59632
2.97679 3.05719 3.08002 3.65887 3.75294 4.12950 4.20502 4.74772
5.20228 5.32466 5.49941 5.58369 5.72056 5.77720 5.87277 5.96330
6.19727 6.20531 6.29165 6.42743 6.57187 6.82092 6.90064 7.37552
7.55170 7.76576 7.99112 8.02631 8.41033 8.55092 9.86665 9.96974
Molecular weight = 226.08amu
Principal moments of inertia in cm(-1)
A = 0.035196 B = 0.007561 C = 0.006569
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 795.352179 B = 3702.279634 C = 4261.356583
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.052 3.948
3 N -0.666 5.666
4 C 0.162 3.838
5 H 0.073 0.927
6 C -0.170 4.170
7 C 0.127 3.873
8 C -0.472 4.472
9 S 0.094 5.906
10 C 0.205 3.795
11 C -0.375 4.375
12 H 0.102 0.898
13 C 0.055 3.945
14 N -0.782 5.782
15 Si 0.939 3.061
16 H -0.256 1.256
17 H -0.270 1.270
18 H -0.270 1.270
19 N -0.576 5.576
20 H 0.052 0.948
21 H 0.051 0.949
22 H 0.063 0.937
23 H 0.065 0.935
24 H 0.019 0.981
25 H 0.344 0.656
26 H 0.058 0.942
27 H 0.045 0.955
28 H 0.059 0.941
29 H 0.124 0.876
30 H 0.296 0.704
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.527 -4.750 2.797 6.064
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.077 4.077
3 N -0.297 5.297
4 C 0.049 3.951
5 H 0.091 0.909
6 C -0.229 4.229
7 C -0.015 4.015
8 C -0.616 4.616
9 S 0.352 5.648
10 C -0.049 4.049
11 C -0.418 4.418
12 H 0.120 0.880
13 C -0.167 4.167
14 N -0.411 5.411
15 Si 0.763 3.237
16 H -0.180 1.180
17 H -0.195 1.195
18 H -0.195 1.195
19 N -0.297 5.297
20 H 0.071 0.929
21 H 0.070 0.930
22 H 0.082 0.918
23 H 0.083 0.917
24 H 0.037 0.963
25 H 0.163 0.837
26 H 0.077 0.923
27 H 0.064 0.936
28 H 0.078 0.922
29 H 0.142 0.858
30 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -2.085 -3.998 1.682 4.812
hybrid contribution -0.124 -0.544 1.149 1.278
sum -2.209 -4.542 2.832 5.790
Atomic orbital electron populations
1.21738 0.95452 1.00839 1.02472 1.21947 0.95380 0.90863 0.99542
1.60380 1.07339 1.11148 1.50800 1.19942 0.86871 0.94424 0.93844
0.90923 1.22403 1.02046 1.00586 0.97880 1.19441 0.90157 0.93804
0.98066 1.25654 1.04421 1.06346 1.25227 1.84131 1.21976 0.99056
1.59650 1.24018 0.91501 0.95477 0.93883 1.19000 1.02410 0.90951
1.29412 0.88000 1.26162 0.94588 1.02542 0.93447 1.68841 1.10935
1.34678 1.26656 0.85712 0.80236 0.78796 0.78992 1.17956 1.19516
1.19484 1.67206 1.33991 0.98574 1.29938 0.92878 0.93035 0.91782
0.91674 0.96294 0.83668 0.92311 0.93572 0.92179 0.85803 0.89152
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.88 10.17 37.16 0.38 -1.50 16
2 C 0.05 0.77 6.20 -3.82 -0.02 0.75 16
3 N -0.67 -12.44 5.91 -107.95 -0.64 -13.08 16
4 C 0.16 3.22 2.91 -68.87 -0.20 3.02 16
5 H 0.07 1.39 7.79 -51.93 -0.40 0.98 16
6 C -0.17 -2.91 9.14 37.16 0.34 -2.57 16
7 C 0.13 3.16 5.77 -84.37 -0.49 2.67 16
8 C -0.47 -11.86 10.86 29.53 0.32 -11.54 16
9 S 0.09 2.46 20.19 -107.50 -2.17 0.29 16
10 C 0.20 5.72 7.14 -16.91 -0.12 5.60 16
11 C -0.38 -9.94 9.45 -38.20 -0.36 -10.31 16
12 H 0.10 2.62 7.85 -52.49 -0.41 2.21 16
13 C 0.05 1.31 5.50 -17.28 -0.10 1.22 16
14 N -0.78 -19.24 10.67 55.56 0.59 -18.65 16
15 Si 0.94 17.86 29.56 -169.99 -5.03 12.83 16
16 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16
17 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16
18 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16
19 N -0.58 -15.67 10.25 -9.33 -0.10 -15.77 16
20 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16
21 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
22 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16
23 H 0.06 0.96 8.05 -51.93 -0.42 0.54 16
24 H 0.02 0.26 7.44 -51.93 -0.39 -0.13 16
25 H 0.34 6.40 8.47 -39.29 -0.33 6.07 16
26 H 0.06 1.06 8.13 -51.93 -0.42 0.64 16
27 H 0.05 0.66 7.45 -51.93 -0.39 0.28 16
28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16
29 H 0.12 2.85 8.06 -52.49 -0.42 2.43 16
30 H 0.30 6.48 8.29 -40.82 -0.34 6.15 16
LS Contribution 269.15 15.07 4.06 4.06
Total: -1.00 -28.51 269.15 -7.54 -36.05
By element:
Atomic # 1 Polarization: 10.94 SS G_CDS: -4.01 Total: 6.93 kcal
Atomic # 6 Polarization: -12.42 SS G_CDS: -0.25 Total: -12.67 kcal
Atomic # 7 Polarization: -47.35 SS G_CDS: -0.14 Total: -47.49 kcal
Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal
Atomic # 16 Polarization: 2.46 SS G_CDS: -2.17 Total: 0.29 kcal
Total LS contribution 4.06 Total: 4.06 kcal
Total: -28.51 -7.54 -36.05 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000070841308.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.141 kcal
(2) G-P(sol) polarization free energy of solvation -28.510 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.631 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.050 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.091 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds