Wall clock time and date at job start Mon Mar 30 2020 03:00:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 N 1.46905 * 109.47113 * 2 1
4 4 C 1.46891 * 110.99919 * 180.02562 * 3 2 1
5 5 H 1.09005 * 109.47434 * 35.00394 * 4 3 2
6 6 C 1.52998 * 109.47428 * 275.00342 * 4 3 2
7 7 C 1.50702 * 109.47145 * 155.00082 * 4 3 2
8 8 C 1.34855 * 122.10698 * 204.99691 * 7 4 3
9 9 S 1.71041 * 109.23630 * 180.02562 * 8 7 4
10 10 C 1.76087 * 90.38993 * 0.02562 * 9 8 7
11 11 C 1.39908 * 125.55468 * 179.97438 * 10 9 8
12 12 H 1.08002 * 120.00278 * 180.02562 * 11 10 9
13 13 C 1.40247 * 119.99935 * 359.74749 * 11 10 9
14 14 N 1.30694 * 120.00119 * 0.27850 * 13 11 10
15 15 Si 1.86803 * 119.99956 * 180.27682 * 13 11 10
16 16 H 1.48496 * 109.47187 * 359.97438 * 15 13 11
17 17 H 1.48502 * 109.47194 * 120.00582 * 15 13 11
18 18 H 1.48506 * 109.46902 * 240.00350 * 15 13 11
19 19 N 1.30463 * 122.10007 * 25.30011 * 7 4 3
20 20 H 1.08996 * 109.46895 * 180.02562 * 1 2 3
21 21 H 1.09001 * 109.46658 * 299.99528 * 1 2 3
22 22 H 1.08995 * 109.47626 * 59.99561 * 1 2 3
23 23 H 1.09001 * 109.46658 * 240.00472 * 2 1 3
24 24 H 1.08995 * 109.47626 * 120.00439 * 2 1 3
25 25 H 1.00907 * 110.99545 * 56.04979 * 3 2 1
26 26 H 1.08999 * 109.46957 * 299.99983 * 6 4 3
27 27 H 1.08994 * 109.47331 * 59.99707 * 6 4 3
28 28 H 1.08996 * 109.47484 * 180.02562 * 6 4 3
29 29 H 1.07995 * 125.38164 * 0.02891 * 8 7 4
30 30 H 0.97005 * 120.00041 * 179.97438 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3850 0.0000
4 6 3.4881 1.4242 -0.0006
5 1 3.8736 0.5925 -0.5904
6 6 4.0020 1.3118 1.4361
7 6 3.9557 2.7250 -0.6011
8 6 5.1675 2.8531 -1.1788
9 16 5.3551 4.4561 -1.7451
10 6 3.7483 4.8662 -1.1528
11 6 3.1381 6.1207 -1.2583
12 1 2.1453 6.2734 -0.8616
13 6 3.8180 7.1817 -1.8739
14 7 5.0195 6.9970 -2.3540
15 14 3.0063 8.8588 -2.0077
16 1 1.6561 8.8058 -1.3921
17 1 3.8347 9.8676 -1.2996
18 1 2.8828 9.2362 -3.4387
19 7 3.2159 3.7995 -0.5895
20 1 -0.3633 -1.0276 0.0005
21 1 -0.3633 0.5138 0.8901
22 1 -0.3634 0.5139 -0.8899
23 1 1.8933 -0.5138 -0.8901
24 1 1.8935 -0.5139 0.8899
25 1 1.6442 1.9013 0.7815
26 1 3.6166 2.1435 2.0259
27 1 3.6638 0.3711 1.8704
28 1 5.0915 1.3414 1.4357
29 1 5.9031 2.0677 -1.2696
30 1 5.4896 7.7308 -2.7801
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000070841308.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:00:41
Heat of formation + Delta-G solvation = -8.087728 kcal
Electronic energy + Delta-G solvation = -13324.298369 eV
Core-core repulsion = 11051.183796 eV
Total energy + Delta-G solvation = -2273.114573 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 226.083 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-39.91964 -37.49066 -35.87802 -33.17212 -30.67020 -28.91617 -27.99511 -25.11609
-23.05062 -22.74408 -19.72631 -19.54833 -17.50786 -16.88396 -16.56238 -15.77934
-15.51283 -14.99327 -14.65968 -14.11889 -14.08516 -13.77407 -13.52139 -13.20556
-12.81042 -12.66521 -12.50863 -12.37436 -12.15677 -11.97779 -11.96121 -11.31522
-11.17469 -9.77555 -9.61383 -9.17083 -8.97907 -8.84581 -6.64678 0.69843
1.41156 1.51299 1.60338 1.63852 2.09076 2.24429 2.36280 3.20696
3.42906 4.02195 4.16488 4.27112 4.31158 4.49524 4.62839 4.70916
4.80162 4.92659 5.00559 5.01298 5.13301 5.18341 5.36290 5.49578
5.76185 5.97631 6.28942 6.45956 6.57069 6.60796 7.95403 8.07148
Molecular weight = 226.08amu
Principal moments of inertia in cm(-1)
A = 0.035196 B = 0.007561 C = 0.006569
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 795.352179 B = 3702.279634 C = 4261.356583
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C 0.052 3.948
3 N -0.686 5.686
4 C 0.162 3.838
5 H 0.081 0.919
6 C -0.157 4.157
7 C 0.120 3.880
8 C -0.491 4.491
9 S 0.070 5.930
10 C 0.171 3.829
11 C -0.401 4.401
12 H 0.101 0.899
13 C 0.019 3.981
14 N -0.801 5.801
15 Si 1.018 2.982
16 H -0.255 1.255
17 H -0.257 1.257
18 H -0.258 1.258
19 N -0.599 5.599
20 H 0.079 0.921
21 H 0.054 0.946
22 H 0.047 0.953
23 H 0.063 0.937
24 H 0.039 0.961
25 H 0.342 0.658
26 H 0.044 0.956
27 H 0.079 0.921
28 H 0.057 0.943
29 H 0.140 0.860
30 H 0.310 0.690
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.235 -4.636 3.129 6.461
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.076 4.076
3 N -0.317 5.317
4 C 0.050 3.950
5 H 0.099 0.901
6 C -0.217 4.217
7 C -0.022 4.022
8 C -0.635 4.635
9 S 0.327 5.673
10 C -0.081 4.081
11 C -0.443 4.443
12 H 0.119 0.881
13 C -0.201 4.201
14 N -0.429 5.429
15 Si 0.836 3.164
16 H -0.178 1.178
17 H -0.181 1.181
18 H -0.182 1.182
19 N -0.321 5.321
20 H 0.098 0.902
21 H 0.074 0.926
22 H 0.066 0.934
23 H 0.082 0.918
24 H 0.057 0.943
25 H 0.160 0.840
26 H 0.063 0.937
27 H 0.098 0.902
28 H 0.076 0.924
29 H 0.158 0.842
30 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges -2.771 -3.927 2.014 5.211
hybrid contribution 0.104 -0.582 1.018 1.178
sum -2.667 -4.509 3.032 6.053
Atomic orbital electron populations
1.21705 0.94008 1.02394 1.01845 1.22034 0.96544 0.88713 1.00337
1.60306 1.06601 1.13724 1.51086 1.19960 0.87974 0.91919 0.95177
0.90070 1.22271 1.01756 1.01735 0.95914 1.20186 0.89832 0.95094
0.97062 1.25834 1.05341 1.06075 1.26235 1.83941 1.21954 1.00604
1.60775 1.24531 0.92350 0.96505 0.94707 1.19360 1.02833 0.91637
1.30497 0.88150 1.27212 0.94887 1.06061 0.91943 1.68876 1.11877
1.36537 1.25642 0.84593 0.79118 0.73172 0.79546 1.17797 1.18134
1.18249 1.67280 1.34790 0.99187 1.30864 0.90202 0.92648 0.93426
0.91840 0.94292 0.83970 0.93720 0.90235 0.92381 0.84218 0.87726
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.34 10.17 71.98 0.73 -2.61 16
2 C 0.05 1.44 6.20 86.30 0.54 1.98 16
3 N -0.69 -25.09 5.91 -495.45 -2.93 -28.02 16
4 C 0.16 6.33 2.91 44.17 0.13 6.46 16
5 H 0.08 3.00 7.79 -2.38 -0.02 2.98 16
6 C -0.16 -5.17 9.14 71.98 0.66 -4.51 16
7 C 0.12 6.00 5.77 41.98 0.24 6.24 16
8 C -0.49 -25.02 10.86 67.04 0.73 -24.29 16
9 S 0.07 3.76 20.19 -56.49 -1.14 2.62 16
10 C 0.17 9.81 7.14 85.09 0.61 10.42 16
11 C -0.40 -21.57 9.45 23.16 0.22 -21.35 16
12 H 0.10 5.26 7.85 -2.91 -0.02 5.24 16
13 C 0.02 0.90 5.50 85.35 0.47 1.37 16
14 N -0.80 -39.22 10.67 21.88 0.23 -38.98 16
15 Si 1.02 35.40 29.56 68.60 2.03 37.42 16
16 H -0.25 -8.74 7.11 99.48 0.71 -8.03 16
17 H -0.26 -8.40 7.11 99.48 0.71 -7.69 16
18 H -0.26 -8.49 7.11 99.48 0.71 -7.79 16
19 N -0.60 -33.32 10.25 -183.43 -1.88 -35.20 16
20 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16
21 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16
22 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16
23 H 0.06 1.76 8.05 -2.39 -0.02 1.74 16
24 H 0.04 0.93 7.44 -2.39 -0.02 0.91 16
25 H 0.34 12.56 8.47 -89.69 -0.76 11.80 16
26 H 0.04 1.58 8.13 -2.39 -0.02 1.56 16
27 H 0.08 2.07 7.45 -2.39 -0.02 2.05 16
28 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16
29 H 0.14 6.46 8.06 -2.91 -0.02 6.43 16
30 H 0.31 13.27 8.29 -92.70 -0.77 12.50 16
Total: -1.00 -61.97 269.15 1.01 -60.96
By element:
Atomic # 1 Polarization: 27.11 SS G_CDS: 0.38 Total: 27.48 kcal
Atomic # 6 Polarization: -30.61 SS G_CDS: 4.32 Total: -26.29 kcal
Atomic # 7 Polarization: -97.62 SS G_CDS: -4.57 Total: -102.20 kcal
Atomic # 14 Polarization: 35.40 SS G_CDS: 2.03 Total: 37.42 kcal
Atomic # 16 Polarization: 3.76 SS G_CDS: -1.14 Total: 2.62 kcal
Total: -61.97 1.01 -60.96 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000070841308.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 52.877 kcal
(2) G-P(sol) polarization free energy of solvation -61.974 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.097 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.965 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.088 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds