Wall clock time and date at job start Mon Mar 30 2020 03:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46905 * 109.47113 * 2 1 4 4 C 1.46891 * 110.99919 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47434 * 35.00394 * 4 3 2 6 6 C 1.52998 * 109.47428 * 275.00342 * 4 3 2 7 7 C 1.50702 * 109.47145 * 155.00082 * 4 3 2 8 8 C 1.34855 * 122.10698 * 204.99691 * 7 4 3 9 9 S 1.71041 * 109.23630 * 180.02562 * 8 7 4 10 10 C 1.76087 * 90.38993 * 0.02562 * 9 8 7 11 11 C 1.39908 * 125.55468 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00278 * 180.02562 * 11 10 9 13 13 C 1.40247 * 119.99935 * 359.74749 * 11 10 9 14 14 N 1.30694 * 120.00119 * 0.27850 * 13 11 10 15 15 Si 1.86803 * 119.99956 * 180.27682 * 13 11 10 16 16 H 1.48496 * 109.47187 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47194 * 120.00582 * 15 13 11 18 18 H 1.48506 * 109.46902 * 240.00350 * 15 13 11 19 19 N 1.30463 * 122.10007 * 25.30011 * 7 4 3 20 20 H 1.08996 * 109.46895 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46658 * 299.99528 * 1 2 3 22 22 H 1.08995 * 109.47626 * 59.99561 * 1 2 3 23 23 H 1.09001 * 109.46658 * 240.00472 * 2 1 3 24 24 H 1.08995 * 109.47626 * 120.00439 * 2 1 3 25 25 H 1.00907 * 110.99545 * 56.04979 * 3 2 1 26 26 H 1.08999 * 109.46957 * 299.99983 * 6 4 3 27 27 H 1.08994 * 109.47331 * 59.99707 * 6 4 3 28 28 H 1.08996 * 109.47484 * 180.02562 * 6 4 3 29 29 H 1.07995 * 125.38164 * 0.02891 * 8 7 4 30 30 H 0.97005 * 120.00041 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4881 1.4242 -0.0006 5 1 3.8736 0.5925 -0.5904 6 6 4.0020 1.3118 1.4361 7 6 3.9557 2.7250 -0.6011 8 6 5.1675 2.8531 -1.1788 9 16 5.3551 4.4561 -1.7451 10 6 3.7483 4.8662 -1.1528 11 6 3.1381 6.1207 -1.2583 12 1 2.1453 6.2734 -0.8616 13 6 3.8180 7.1817 -1.8739 14 7 5.0195 6.9970 -2.3540 15 14 3.0063 8.8588 -2.0077 16 1 1.6561 8.8058 -1.3921 17 1 3.8347 9.8676 -1.2996 18 1 2.8828 9.2362 -3.4387 19 7 3.2159 3.7995 -0.5895 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 1.8933 -0.5138 -0.8901 24 1 1.8935 -0.5139 0.8899 25 1 1.6442 1.9013 0.7815 26 1 3.6166 2.1435 2.0259 27 1 3.6638 0.3711 1.8704 28 1 5.0915 1.3414 1.4357 29 1 5.9031 2.0677 -1.2696 30 1 5.4896 7.7308 -2.7801 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070841308.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:41 Heat of formation + Delta-G solvation = -8.087728 kcal Electronic energy + Delta-G solvation = -13324.298369 eV Core-core repulsion = 11051.183796 eV Total energy + Delta-G solvation = -2273.114573 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.91964 -37.49066 -35.87802 -33.17212 -30.67020 -28.91617 -27.99511 -25.11609 -23.05062 -22.74408 -19.72631 -19.54833 -17.50786 -16.88396 -16.56238 -15.77934 -15.51283 -14.99327 -14.65968 -14.11889 -14.08516 -13.77407 -13.52139 -13.20556 -12.81042 -12.66521 -12.50863 -12.37436 -12.15677 -11.97779 -11.96121 -11.31522 -11.17469 -9.77555 -9.61383 -9.17083 -8.97907 -8.84581 -6.64678 0.69843 1.41156 1.51299 1.60338 1.63852 2.09076 2.24429 2.36280 3.20696 3.42906 4.02195 4.16488 4.27112 4.31158 4.49524 4.62839 4.70916 4.80162 4.92659 5.00559 5.01298 5.13301 5.18341 5.36290 5.49578 5.76185 5.97631 6.28942 6.45956 6.57069 6.60796 7.95403 8.07148 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.035196 B = 0.007561 C = 0.006569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.352179 B = 3702.279634 C = 4261.356583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.052 3.948 3 N -0.686 5.686 4 C 0.162 3.838 5 H 0.081 0.919 6 C -0.157 4.157 7 C 0.120 3.880 8 C -0.491 4.491 9 S 0.070 5.930 10 C 0.171 3.829 11 C -0.401 4.401 12 H 0.101 0.899 13 C 0.019 3.981 14 N -0.801 5.801 15 Si 1.018 2.982 16 H -0.255 1.255 17 H -0.257 1.257 18 H -0.258 1.258 19 N -0.599 5.599 20 H 0.079 0.921 21 H 0.054 0.946 22 H 0.047 0.953 23 H 0.063 0.937 24 H 0.039 0.961 25 H 0.342 0.658 26 H 0.044 0.956 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.140 0.860 30 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.235 -4.636 3.129 6.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.076 4.076 3 N -0.317 5.317 4 C 0.050 3.950 5 H 0.099 0.901 6 C -0.217 4.217 7 C -0.022 4.022 8 C -0.635 4.635 9 S 0.327 5.673 10 C -0.081 4.081 11 C -0.443 4.443 12 H 0.119 0.881 13 C -0.201 4.201 14 N -0.429 5.429 15 Si 0.836 3.164 16 H -0.178 1.178 17 H -0.181 1.181 18 H -0.182 1.182 19 N -0.321 5.321 20 H 0.098 0.902 21 H 0.074 0.926 22 H 0.066 0.934 23 H 0.082 0.918 24 H 0.057 0.943 25 H 0.160 0.840 26 H 0.063 0.937 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.158 0.842 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.771 -3.927 2.014 5.211 hybrid contribution 0.104 -0.582 1.018 1.178 sum -2.667 -4.509 3.032 6.053 Atomic orbital electron populations 1.21705 0.94008 1.02394 1.01845 1.22034 0.96544 0.88713 1.00337 1.60306 1.06601 1.13724 1.51086 1.19960 0.87974 0.91919 0.95177 0.90070 1.22271 1.01756 1.01735 0.95914 1.20186 0.89832 0.95094 0.97062 1.25834 1.05341 1.06075 1.26235 1.83941 1.21954 1.00604 1.60775 1.24531 0.92350 0.96505 0.94707 1.19360 1.02833 0.91637 1.30497 0.88150 1.27212 0.94887 1.06061 0.91943 1.68876 1.11877 1.36537 1.25642 0.84593 0.79118 0.73172 0.79546 1.17797 1.18134 1.18249 1.67280 1.34790 0.99187 1.30864 0.90202 0.92648 0.93426 0.91840 0.94292 0.83970 0.93720 0.90235 0.92381 0.84218 0.87726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 10.17 71.98 0.73 -2.61 16 2 C 0.05 1.44 6.20 86.30 0.54 1.98 16 3 N -0.69 -25.09 5.91 -495.45 -2.93 -28.02 16 4 C 0.16 6.33 2.91 44.17 0.13 6.46 16 5 H 0.08 3.00 7.79 -2.38 -0.02 2.98 16 6 C -0.16 -5.17 9.14 71.98 0.66 -4.51 16 7 C 0.12 6.00 5.77 41.98 0.24 6.24 16 8 C -0.49 -25.02 10.86 67.04 0.73 -24.29 16 9 S 0.07 3.76 20.19 -56.49 -1.14 2.62 16 10 C 0.17 9.81 7.14 85.09 0.61 10.42 16 11 C -0.40 -21.57 9.45 23.16 0.22 -21.35 16 12 H 0.10 5.26 7.85 -2.91 -0.02 5.24 16 13 C 0.02 0.90 5.50 85.35 0.47 1.37 16 14 N -0.80 -39.22 10.67 21.88 0.23 -38.98 16 15 Si 1.02 35.40 29.56 68.60 2.03 37.42 16 16 H -0.25 -8.74 7.11 99.48 0.71 -8.03 16 17 H -0.26 -8.40 7.11 99.48 0.71 -7.69 16 18 H -0.26 -8.49 7.11 99.48 0.71 -7.79 16 19 N -0.60 -33.32 10.25 -183.43 -1.88 -35.20 16 20 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 21 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 22 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.06 1.76 8.05 -2.39 -0.02 1.74 16 24 H 0.04 0.93 7.44 -2.39 -0.02 0.91 16 25 H 0.34 12.56 8.47 -89.69 -0.76 11.80 16 26 H 0.04 1.58 8.13 -2.39 -0.02 1.56 16 27 H 0.08 2.07 7.45 -2.39 -0.02 2.05 16 28 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.14 6.46 8.06 -2.91 -0.02 6.43 16 30 H 0.31 13.27 8.29 -92.70 -0.77 12.50 16 Total: -1.00 -61.97 269.15 1.01 -60.96 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 0.38 Total: 27.48 kcal Atomic # 6 Polarization: -30.61 SS G_CDS: 4.32 Total: -26.29 kcal Atomic # 7 Polarization: -97.62 SS G_CDS: -4.57 Total: -102.20 kcal Atomic # 14 Polarization: 35.40 SS G_CDS: 2.03 Total: 37.42 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -1.14 Total: 2.62 kcal Total: -61.97 1.01 -60.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070841308.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.877 kcal (2) G-P(sol) polarization free energy of solvation -61.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds