Wall clock time and date at job start Mon Mar 30 2020 03:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00107 * 2 1 4 4 H 1.48502 * 109.46983 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47383 * 300.00435 * 3 2 1 6 6 H 1.48497 * 109.47068 * 60.00615 * 3 2 1 7 7 C 1.37877 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00496 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99831 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47030 * 180.02562 * 9 7 2 11 11 N 1.46908 * 109.47161 * 179.97438 * 10 9 7 12 12 C 1.46897 * 111.00039 * 179.97438 * 11 10 9 13 13 H 1.08998 * 109.52144 * 324.87407 * 12 11 10 14 14 C 1.53239 * 109.52153 * 204.68193 * 12 11 10 15 15 C 1.53241 * 108.56680 * 184.47965 * 14 12 11 16 16 C 1.50589 * 109.16288 * 55.61933 * 15 14 12 17 17 O 1.21220 * 119.36335 * 150.92354 * 16 15 14 18 18 N 1.34148 * 121.27454 * 330.64747 * 16 15 14 19 19 C 1.34138 * 122.58404 * 1.07941 * 18 16 15 20 20 O 1.21233 * 119.36187 * 179.20181 * 19 18 16 21 21 H 0.97000 * 119.99719 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47299 * 59.99691 * 9 7 2 23 23 H 1.09007 * 109.46815 * 300.00046 * 9 7 2 24 24 H 1.08998 * 109.47575 * 59.99563 * 10 9 7 25 25 H 1.08996 * 109.47446 * 299.99323 * 10 9 7 26 26 H 1.00902 * 110.99880 * 303.95474 * 11 10 9 27 27 H 1.08994 * 109.62370 * 304.21006 * 14 12 11 28 28 H 1.09003 * 109.61781 * 64.57365 * 14 12 11 29 29 H 1.09002 * 109.52131 * 175.52145 * 15 14 12 30 30 H 1.08995 * 109.52654 * 295.71107 * 15 14 12 31 31 H 0.97001 * 118.70642 * 180.82092 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5106 -4.9343 0.0001 12 6 2.4351 -6.0759 -0.0005 13 1 3.3168 -5.8303 -0.5923 14 6 1.7370 -7.2998 -0.6030 15 6 2.6788 -8.5034 -0.4905 16 6 3.0794 -8.6846 0.9498 17 8 3.3494 -9.7941 1.3565 18 7 3.1485 -7.6412 1.7900 19 6 2.8489 -6.3891 1.4131 20 8 2.9174 -5.4915 2.2251 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 -0.8902 23 1 0.6246 -2.5570 0.8898 24 1 2.8719 -3.6044 0.8894 25 1 2.8718 -3.6045 -0.8905 26 1 0.8744 -4.9842 0.7817 27 1 0.8166 -7.5027 -0.0555 28 1 1.5050 -7.1098 -1.6510 29 1 2.1679 -9.3998 -0.8420 30 1 3.5677 -8.3283 -1.0965 31 1 3.4223 -7.7988 2.7071 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084405529.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:01 Heat of formation + Delta-G solvation = -111.013937 kcal Electronic energy + Delta-G solvation = -15369.519175 eV Core-core repulsion = 12649.188516 eV Total energy + Delta-G solvation = -2720.330659 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.54220 -40.12677 -37.56760 -36.40517 -35.19851 -33.74672 -31.22797 -28.14374 -25.72078 -24.71847 -23.73385 -22.52870 -20.26738 -18.78713 -18.54462 -18.35276 -17.26495 -16.80055 -16.41842 -15.94347 -15.68206 -15.37200 -15.03949 -14.74648 -14.23371 -13.78305 -13.36317 -13.08580 -12.96429 -12.81618 -12.35888 -12.20674 -11.96338 -11.58384 -11.39089 -11.37183 -11.29920 -11.20497 -10.56060 -9.49328 -8.19472 -6.30180 0.41175 1.41073 1.41605 1.54732 1.72529 1.74718 2.41397 2.93657 3.10775 3.14527 3.63569 3.77527 4.06632 4.19192 4.45141 4.54962 4.69235 4.79885 4.92948 5.07289 5.11014 5.24766 5.44546 5.68349 5.70236 5.78369 6.03017 6.17280 6.30385 6.34409 6.76515 6.86846 7.38920 8.92966 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.063767 B = 0.005052 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.991118 B = 5541.055647 C = 5731.557453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.281 1.281 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.032 3.968 10 C 0.077 3.923 11 N -0.657 5.657 12 C 0.067 3.933 13 H 0.137 0.863 14 C -0.101 4.101 15 C -0.129 4.129 16 C 0.528 3.472 17 O -0.544 6.544 18 N -0.672 5.672 19 C 0.495 3.505 20 O -0.538 6.538 21 H 0.264 0.736 22 H 0.003 0.997 23 H -0.016 1.016 24 H 0.021 0.979 25 H 0.073 0.927 26 H 0.340 0.660 27 H 0.077 0.923 28 H 0.124 0.876 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.580 -16.916 -3.099 18.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.206 1.206 7 C -0.581 4.581 8 H 0.077 0.923 9 C -0.006 4.006 10 C -0.052 4.052 11 N -0.286 5.286 12 C -0.047 4.047 13 H 0.155 0.845 14 C -0.139 4.139 15 C -0.169 4.169 16 C 0.320 3.680 17 O -0.419 6.419 18 N -0.336 5.336 19 C 0.284 3.716 20 O -0.412 6.412 21 H 0.072 0.928 22 H 0.021 0.979 23 H 0.003 0.997 24 H 0.040 0.960 25 H 0.091 0.909 26 H 0.158 0.842 27 H 0.095 0.905 28 H 0.142 0.858 29 H 0.157 0.843 30 H 0.158 0.842 31 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 5.450 -16.861 -3.389 18.041 hybrid contribution 0.580 1.089 1.919 2.282 sum 6.030 -15.772 -1.470 16.949 Atomic orbital electron populations 1.70107 1.07764 1.27699 1.51598 1.25943 0.95753 1.03279 0.94671 0.85395 0.79042 0.78781 0.77794 1.18662 1.20026 1.20646 1.21635 0.93511 0.92322 1.50666 0.92281 1.18909 0.94329 0.92276 0.95080 1.21955 0.95905 0.87882 0.99463 1.60880 1.17715 1.01157 1.48802 1.22270 0.98880 0.94369 0.89206 0.84517 1.21732 0.97931 0.89040 1.05212 1.22058 1.03676 1.02197 0.88958 1.21795 0.73551 0.82399 0.90244 1.90772 1.47297 1.25130 1.78750 1.45086 1.62603 1.09078 1.16799 1.22975 0.73921 0.81162 0.93574 1.90834 1.49437 1.45810 1.55073 0.92759 0.97855 0.99727 0.96019 0.90907 0.84223 0.90460 0.85821 0.84301 0.84158 0.75504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16 2 C 0.00 0.08 5.46 84.65 0.46 0.55 16 3 Si 0.97 44.56 29.54 68.60 2.03 46.59 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.54 -31.20 9.11 25.60 0.23 -30.97 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 9 C 0.03 1.67 5.23 29.85 0.16 1.83 16 10 C 0.08 3.13 5.29 86.30 0.46 3.58 16 11 N -0.66 -20.75 6.12 -495.21 -3.03 -23.78 16 12 C 0.07 1.45 2.72 44.21 0.12 1.57 16 13 H 0.14 2.54 7.80 -2.39 -0.02 2.52 16 14 C -0.10 -1.32 5.69 30.75 0.18 -1.14 16 15 C -0.13 -1.24 6.07 29.89 0.18 -1.06 16 16 C 0.53 9.56 7.74 87.72 0.68 10.24 16 17 O -0.54 -13.49 17.87 -2.84 -0.05 -13.54 16 18 N -0.67 -13.81 5.09 -428.62 -2.18 -16.00 16 19 C 0.50 12.62 7.34 87.72 0.64 13.27 16 20 O -0.54 -19.14 15.74 -2.88 -0.05 -19.19 16 21 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 22 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 23 H -0.02 -0.91 8.14 -2.38 -0.02 -0.93 16 24 H 0.02 0.95 6.70 -2.39 -0.02 0.93 16 25 H 0.07 2.78 8.06 -2.39 -0.02 2.76 16 26 H 0.34 11.44 8.32 -89.69 -0.75 10.70 16 27 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.14 0.69 8.14 -2.39 -0.02 0.68 16 31 H 0.41 8.29 8.79 -92.71 -0.81 7.48 16 Total: -1.00 -73.93 268.21 -0.29 -74.23 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -0.40 Total: 10.57 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 3.11 Total: -2.14 kcal Atomic # 7 Polarization: -91.59 SS G_CDS: -4.93 Total: -96.52 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -0.10 Total: -32.72 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -73.93 -0.29 -74.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084405529.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.788 kcal (2) G-P(sol) polarization free energy of solvation -73.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds