Wall clock time and date at job start Mon Mar 30 2020 03:37:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86802 * 120.00107 * 2 1
4 4 H 1.48502 * 109.46983 * 180.02562 * 3 2 1
5 5 H 1.48493 * 109.47383 * 300.00435 * 3 2 1
6 6 H 1.48497 * 109.47068 * 60.00615 * 3 2 1
7 7 C 1.37877 * 119.99995 * 180.02562 * 2 1 3
8 8 H 1.07996 * 120.00496 * 179.97438 * 7 2 1
9 9 C 1.50703 * 119.99831 * 359.97438 * 7 2 1
10 10 C 1.52998 * 109.47030 * 180.02562 * 9 7 2
11 11 N 1.46908 * 109.47161 * 179.97438 * 10 9 7
12 12 C 1.46897 * 111.00039 * 179.97438 * 11 10 9
13 13 H 1.08998 * 109.52144 * 324.87407 * 12 11 10
14 14 C 1.53239 * 109.52153 * 204.68193 * 12 11 10
15 15 C 1.53241 * 108.56680 * 184.47965 * 14 12 11
16 16 C 1.50589 * 109.16288 * 55.61933 * 15 14 12
17 17 O 1.21220 * 119.36335 * 150.92354 * 16 15 14
18 18 N 1.34148 * 121.27454 * 330.64747 * 16 15 14
19 19 C 1.34138 * 122.58404 * 1.07941 * 18 16 15
20 20 O 1.21233 * 119.36187 * 179.20181 * 19 18 16
21 21 H 0.97000 * 119.99719 * 359.97438 * 1 2 3
22 22 H 1.08998 * 109.47299 * 59.99691 * 9 7 2
23 23 H 1.09007 * 109.46815 * 300.00046 * 9 7 2
24 24 H 1.08998 * 109.47575 * 59.99563 * 10 9 7
25 25 H 1.08996 * 109.47446 * 299.99323 * 10 9 7
26 26 H 1.00902 * 110.99880 * 303.95474 * 11 10 9
27 27 H 1.08994 * 109.62370 * 304.21006 * 14 12 11
28 28 H 1.09003 * 109.61781 * 64.57365 * 14 12 11
29 29 H 1.09002 * 109.52131 * 175.52145 * 15 14 12
30 30 H 1.08995 * 109.52654 * 295.71107 * 15 14 12
31 31 H 0.97001 * 118.70642 * 180.82092 * 18 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3463 -0.0006
5 1 1.8904 2.3965 -1.2124
6 1 1.8906 2.3964 1.2126
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2510 -2.4992 -0.0005
10 6 2.2452 -3.6621 -0.0005
11 7 1.5106 -4.9343 0.0001
12 6 2.4351 -6.0759 -0.0005
13 1 3.3168 -5.8303 -0.5923
14 6 1.7370 -7.2998 -0.6030
15 6 2.6788 -8.5034 -0.4905
16 6 3.0794 -8.6846 0.9498
17 8 3.3494 -9.7941 1.3565
18 7 3.1485 -7.6412 1.7900
19 6 2.8489 -6.3891 1.4131
20 8 2.9174 -5.4915 2.2251
21 1 -0.4850 0.8401 0.0004
22 1 0.6239 -2.5567 -0.8902
23 1 0.6246 -2.5570 0.8898
24 1 2.8719 -3.6044 0.8894
25 1 2.8718 -3.6045 -0.8905
26 1 0.8744 -4.9842 0.7817
27 1 0.8166 -7.5027 -0.0555
28 1 1.5050 -7.1098 -1.6510
29 1 2.1679 -9.3998 -0.8420
30 1 3.5677 -8.3283 -1.0965
31 1 3.4223 -7.7988 2.7071
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000084405529.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:01
Heat of formation + Delta-G solvation = -111.013937 kcal
Electronic energy + Delta-G solvation = -15369.519175 eV
Core-core repulsion = 12649.188516 eV
Total energy + Delta-G solvation = -2720.330659 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 226.110 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-42.54220 -40.12677 -37.56760 -36.40517 -35.19851 -33.74672 -31.22797 -28.14374
-25.72078 -24.71847 -23.73385 -22.52870 -20.26738 -18.78713 -18.54462 -18.35276
-17.26495 -16.80055 -16.41842 -15.94347 -15.68206 -15.37200 -15.03949 -14.74648
-14.23371 -13.78305 -13.36317 -13.08580 -12.96429 -12.81618 -12.35888 -12.20674
-11.96338 -11.58384 -11.39089 -11.37183 -11.29920 -11.20497 -10.56060 -9.49328
-8.19472 -6.30180 0.41175 1.41073 1.41605 1.54732 1.72529 1.74718
2.41397 2.93657 3.10775 3.14527 3.63569 3.77527 4.06632 4.19192
4.45141 4.54962 4.69235 4.79885 4.92948 5.07289 5.11014 5.24766
5.44546 5.68349 5.70236 5.78369 6.03017 6.17280 6.30385 6.34409
6.76515 6.86846 7.38920 8.92966
Molecular weight = 226.11amu
Principal moments of inertia in cm(-1)
A = 0.063767 B = 0.005052 C = 0.004884
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 438.991118 B = 5541.055647 C = 5731.557453
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.931 5.931
2 C 0.001 3.999
3 Si 0.965 3.035
4 H -0.263 1.263
5 H -0.275 1.275
6 H -0.281 1.281
7 C -0.543 4.543
8 H 0.059 0.941
9 C 0.032 3.968
10 C 0.077 3.923
11 N -0.657 5.657
12 C 0.067 3.933
13 H 0.137 0.863
14 C -0.101 4.101
15 C -0.129 4.129
16 C 0.528 3.472
17 O -0.544 6.544
18 N -0.672 5.672
19 C 0.495 3.505
20 O -0.538 6.538
21 H 0.264 0.736
22 H 0.003 0.997
23 H -0.016 1.016
24 H 0.021 0.979
25 H 0.073 0.927
26 H 0.340 0.660
27 H 0.077 0.923
28 H 0.124 0.876
29 H 0.139 0.861
30 H 0.141 0.859
31 H 0.406 0.594
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.580 -16.916 -3.099 18.080
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.572 5.572
2 C -0.196 4.196
3 Si 0.790 3.210
4 H -0.187 1.187
5 H -0.200 1.200
6 H -0.206 1.206
7 C -0.581 4.581
8 H 0.077 0.923
9 C -0.006 4.006
10 C -0.052 4.052
11 N -0.286 5.286
12 C -0.047 4.047
13 H 0.155 0.845
14 C -0.139 4.139
15 C -0.169 4.169
16 C 0.320 3.680
17 O -0.419 6.419
18 N -0.336 5.336
19 C 0.284 3.716
20 O -0.412 6.412
21 H 0.072 0.928
22 H 0.021 0.979
23 H 0.003 0.997
24 H 0.040 0.960
25 H 0.091 0.909
26 H 0.158 0.842
27 H 0.095 0.905
28 H 0.142 0.858
29 H 0.157 0.843
30 H 0.158 0.842
31 H 0.245 0.755
Dipole moment (debyes) X Y Z Total
from point charges 5.450 -16.861 -3.389 18.041
hybrid contribution 0.580 1.089 1.919 2.282
sum 6.030 -15.772 -1.470 16.949
Atomic orbital electron populations
1.70107 1.07764 1.27699 1.51598 1.25943 0.95753 1.03279 0.94671
0.85395 0.79042 0.78781 0.77794 1.18662 1.20026 1.20646 1.21635
0.93511 0.92322 1.50666 0.92281 1.18909 0.94329 0.92276 0.95080
1.21955 0.95905 0.87882 0.99463 1.60880 1.17715 1.01157 1.48802
1.22270 0.98880 0.94369 0.89206 0.84517 1.21732 0.97931 0.89040
1.05212 1.22058 1.03676 1.02197 0.88958 1.21795 0.73551 0.82399
0.90244 1.90772 1.47297 1.25130 1.78750 1.45086 1.62603 1.09078
1.16799 1.22975 0.73921 0.81162 0.93574 1.90834 1.49437 1.45810
1.55073 0.92759 0.97855 0.99727 0.96019 0.90907 0.84223 0.90460
0.85821 0.84301 0.84158 0.75504
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16
2 C 0.00 0.08 5.46 84.65 0.46 0.55 16
3 Si 0.97 44.56 29.54 68.60 2.03 46.59 16
4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16
5 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16
6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16
7 C -0.54 -31.20 9.11 25.60 0.23 -30.97 16
8 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16
9 C 0.03 1.67 5.23 29.85 0.16 1.83 16
10 C 0.08 3.13 5.29 86.30 0.46 3.58 16
11 N -0.66 -20.75 6.12 -495.21 -3.03 -23.78 16
12 C 0.07 1.45 2.72 44.21 0.12 1.57 16
13 H 0.14 2.54 7.80 -2.39 -0.02 2.52 16
14 C -0.10 -1.32 5.69 30.75 0.18 -1.14 16
15 C -0.13 -1.24 6.07 29.89 0.18 -1.06 16
16 C 0.53 9.56 7.74 87.72 0.68 10.24 16
17 O -0.54 -13.49 17.87 -2.84 -0.05 -13.54 16
18 N -0.67 -13.81 5.09 -428.62 -2.18 -16.00 16
19 C 0.50 12.62 7.34 87.72 0.64 13.27 16
20 O -0.54 -19.14 15.74 -2.88 -0.05 -19.19 16
21 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16
22 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16
23 H -0.02 -0.91 8.14 -2.38 -0.02 -0.93 16
24 H 0.02 0.95 6.70 -2.39 -0.02 0.93 16
25 H 0.07 2.78 8.06 -2.39 -0.02 2.76 16
26 H 0.34 11.44 8.32 -89.69 -0.75 10.70 16
27 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16
28 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16
29 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16
30 H 0.14 0.69 8.14 -2.39 -0.02 0.68 16
31 H 0.41 8.29 8.79 -92.71 -0.81 7.48 16
Total: -1.00 -73.93 268.21 -0.29 -74.23
By element:
Atomic # 1 Polarization: 10.98 SS G_CDS: -0.40 Total: 10.57 kcal
Atomic # 6 Polarization: -5.25 SS G_CDS: 3.11 Total: -2.14 kcal
Atomic # 7 Polarization: -91.59 SS G_CDS: -4.93 Total: -96.52 kcal
Atomic # 8 Polarization: -32.63 SS G_CDS: -0.10 Total: -32.72 kcal
Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal
Total: -73.93 -0.29 -74.23 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000084405529.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.788 kcal
(2) G-P(sol) polarization free energy of solvation -73.932 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.719 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.294 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.226 kcal
(6) G-S(sol) free energy of system = (1) + (5) -111.014 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds