Wall clock time and date at job start Mon Mar 30 2020 03:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00108 * 2 1 4 4 H 1.48500 * 109.47405 * 239.99374 * 3 2 1 5 5 H 1.48503 * 109.46960 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47462 * 119.99276 * 3 2 1 7 7 C 1.37884 * 119.99855 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99589 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00159 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47187 * 179.97438 * 9 7 2 11 11 N 1.46895 * 109.46940 * 179.97438 * 10 9 7 12 12 C 1.46908 * 110.99909 * 180.02562 * 11 10 9 13 13 H 1.08999 * 109.51866 * 35.12631 * 12 11 10 14 14 C 1.53232 * 109.52425 * 155.31973 * 12 11 10 15 15 C 1.53242 * 108.56852 * 175.52098 * 14 12 11 16 16 C 1.50591 * 109.06606 * 304.20503 * 15 14 12 17 17 O 1.21237 * 119.36384 * 209.28038 * 16 15 14 18 18 N 1.34138 * 121.27961 * 29.54800 * 16 15 14 19 19 C 1.34148 * 122.58329 * 358.90555 * 18 16 15 20 20 O 1.21226 * 119.35637 * 180.82747 * 19 18 16 21 21 H 0.97005 * 120.00343 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46936 * 59.99917 * 9 7 2 23 23 H 1.08996 * 109.47070 * 300.00421 * 9 7 2 24 24 H 1.09004 * 109.47106 * 60.00198 * 10 9 7 25 25 H 1.08998 * 109.47128 * 300.00488 * 10 9 7 26 26 H 1.00900 * 111.00359 * 303.95250 * 11 10 9 27 27 H 1.09009 * 109.62399 * 295.24195 * 14 12 11 28 28 H 1.08998 * 109.62394 * 55.60942 * 14 12 11 29 29 H 1.09000 * 109.52451 * 64.29136 * 15 14 12 30 30 H 1.09008 * 109.52336 * 184.47945 * 15 14 12 31 31 H 0.97001 * 118.71201 * 179.19821 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5107 -4.9342 0.0012 12 6 2.4352 -6.0759 0.0018 13 1 3.3173 -5.8299 0.5928 14 6 1.7376 -7.2995 0.6054 15 6 2.6794 -8.5031 0.4929 16 6 3.0741 -8.6857 -0.9488 17 8 3.3395 -9.7963 -1.3564 18 7 3.1431 -7.6428 -1.7895 19 6 2.8481 -6.3898 -1.4120 20 8 2.9157 -5.4928 -2.2246 21 1 -0.4851 0.8401 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8902 24 1 2.8719 -3.6044 0.8906 25 1 2.8719 -3.6043 -0.8894 26 1 0.8745 -4.9841 0.7827 27 1 1.5092 -7.1102 1.6544 28 1 0.8152 -7.5008 0.0606 29 1 3.5686 -8.3276 1.0984 30 1 2.1687 -9.3994 0.8453 31 1 3.4128 -7.8014 -2.7076 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084405530.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:04 Heat of formation + Delta-G solvation = -80.963373 kcal Electronic energy + Delta-G solvation = -15355.041717 eV Core-core repulsion = 12636.014148 eV Total energy + Delta-G solvation = -2719.027569 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.45529 -38.90228 -36.47321 -35.14724 -33.51450 -32.32972 -29.60429 -26.77910 -24.08075 -23.91071 -22.65959 -20.61699 -19.24398 -17.74947 -17.25555 -16.54025 -16.16599 -15.14865 -14.87609 -14.68638 -14.54256 -14.29475 -13.98710 -13.18837 -13.06346 -12.47967 -12.25908 -11.83563 -11.36665 -11.18467 -10.90531 -10.57925 -10.47747 -10.24842 -10.14709 -10.01966 -9.37453 -9.16556 -8.35550 -8.06218 -5.99051 -4.01387 1.49088 2.66683 2.78385 3.34536 3.38870 3.41498 3.82947 4.22229 4.34737 4.48329 4.49274 4.90059 4.94656 5.10808 5.34603 5.37188 5.47374 5.71946 5.94754 6.25297 6.35106 6.77664 6.97574 7.24835 7.32998 7.63093 7.72674 7.85753 7.91518 8.06217 8.42950 9.05134 9.62176 11.12455 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.063444 B = 0.005054 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.225709 B = 5538.649349 C = 5736.326727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.027 3.973 10 C 0.062 3.938 11 N -0.671 5.671 12 C 0.068 3.932 13 H 0.085 0.915 14 C -0.127 4.127 15 C -0.139 4.139 16 C 0.527 3.473 17 O -0.516 6.516 18 N -0.677 5.677 19 C 0.522 3.478 20 O -0.468 6.468 21 H 0.261 0.739 22 H 0.026 0.974 23 H 0.013 0.987 24 H 0.018 0.982 25 H 0.074 0.926 26 H 0.348 0.652 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.111 0.889 30 H 0.115 0.885 31 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.511 -16.139 3.282 17.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.066 4.066 11 N -0.304 5.304 12 C -0.046 4.046 13 H 0.103 0.897 14 C -0.165 4.165 15 C -0.180 4.180 16 C 0.316 3.684 17 O -0.390 6.390 18 N -0.343 5.343 19 C 0.308 3.692 20 O -0.336 6.336 21 H 0.071 0.929 22 H 0.045 0.955 23 H 0.032 0.968 24 H 0.036 0.964 25 H 0.092 0.908 26 H 0.169 0.831 27 H 0.114 0.886 28 H 0.107 0.893 29 H 0.129 0.871 30 H 0.133 0.867 31 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 4.367 -16.030 2.176 16.756 hybrid contribution 0.904 0.934 0.433 1.370 sum 5.271 -15.096 2.609 16.201 Atomic orbital electron populations 1.69957 1.06034 1.26715 1.50590 1.24987 0.94837 0.99192 0.95262 0.86642 0.79566 0.83082 0.78603 1.20200 1.21267 1.20302 1.21113 0.92958 0.90943 1.50996 0.92799 1.19043 0.93960 0.90302 0.97723 1.22391 0.97265 0.87439 0.99465 1.60296 1.18831 1.01169 1.50145 1.21538 0.98018 0.94006 0.91028 0.89747 1.21957 0.99168 0.91895 1.03527 1.21904 1.02458 1.01659 0.91942 1.20975 0.74821 0.83543 0.89098 1.90774 1.46096 1.24058 1.78083 1.44984 1.63859 1.09201 1.16254 1.21173 0.75205 0.81021 0.91765 1.90803 1.45547 1.44262 1.53023 0.92934 0.95517 0.96825 0.96425 0.90790 0.83132 0.88638 0.89343 0.87057 0.86699 0.75171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.94 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.03 0.70 5.23 -27.89 -0.15 0.56 16 10 C 0.06 1.27 5.29 -3.83 -0.02 1.25 16 11 N -0.67 -10.91 6.12 -107.88 -0.66 -11.56 16 12 C 0.07 0.83 2.74 -68.79 -0.19 0.64 16 13 H 0.09 0.93 7.80 -51.93 -0.41 0.53 16 14 C -0.13 -1.01 5.35 -26.49 -0.14 -1.15 16 15 C -0.14 -0.95 6.08 -27.81 -0.17 -1.12 16 16 C 0.53 5.51 7.74 -11.32 -0.09 5.42 16 17 O -0.52 -6.95 17.88 5.59 0.10 -6.85 16 18 N -0.68 -7.69 5.09 -11.75 -0.06 -7.75 16 19 C 0.52 7.35 7.56 -11.32 -0.09 7.26 16 20 O -0.47 -8.79 15.88 5.60 0.09 -8.71 16 21 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 22 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.02 0.34 8.06 -51.93 -0.42 -0.08 16 25 H 0.07 1.66 6.70 -51.93 -0.35 1.32 16 26 H 0.35 5.00 8.37 -39.29 -0.33 4.67 16 27 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 28 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.11 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.41 4.40 8.79 -40.82 -0.36 4.04 16 LS Contribution 268.29 15.07 4.04 4.04 Total: -1.00 -34.28 268.29 -5.96 -40.24 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -3.94 Total: 0.77 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -1.25 Total: -0.71 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.02 Total: -45.52 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.19 Total: -15.56 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -34.28 -5.96 -40.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084405530.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.725 kcal (2) G-P(sol) polarization free energy of solvation -34.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds