Wall clock time and date at job start Mon Mar 30 2020 03:37:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86795 * 120.00108 * 2 1
4 4 H 1.48500 * 109.47405 * 239.99374 * 3 2 1
5 5 H 1.48503 * 109.46960 * 359.97438 * 3 2 1
6 6 H 1.48498 * 109.47462 * 119.99276 * 3 2 1
7 7 C 1.37884 * 119.99855 * 179.97438 * 2 1 3
8 8 H 1.08005 * 119.99589 * 180.02562 * 7 2 1
9 9 C 1.50697 * 120.00159 * 0.02562 * 7 2 1
10 10 C 1.52997 * 109.47187 * 179.97438 * 9 7 2
11 11 N 1.46895 * 109.46940 * 179.97438 * 10 9 7
12 12 C 1.46908 * 110.99909 * 180.02562 * 11 10 9
13 13 H 1.08999 * 109.51866 * 35.12631 * 12 11 10
14 14 C 1.53232 * 109.52425 * 155.31973 * 12 11 10
15 15 C 1.53242 * 108.56852 * 175.52098 * 14 12 11
16 16 C 1.50591 * 109.06606 * 304.20503 * 15 14 12
17 17 O 1.21237 * 119.36384 * 209.28038 * 16 15 14
18 18 N 1.34138 * 121.27961 * 29.54800 * 16 15 14
19 19 C 1.34148 * 122.58329 * 358.90555 * 18 16 15
20 20 O 1.21226 * 119.35637 * 180.82747 * 19 18 16
21 21 H 0.97005 * 120.00343 * 0.02562 * 1 2 3
22 22 H 1.09004 * 109.46936 * 59.99917 * 9 7 2
23 23 H 1.08996 * 109.47070 * 300.00421 * 9 7 2
24 24 H 1.09004 * 109.47106 * 60.00198 * 10 9 7
25 25 H 1.08998 * 109.47128 * 300.00488 * 10 9 7
26 26 H 1.00900 * 111.00359 * 303.95250 * 11 10 9
27 27 H 1.09009 * 109.62399 * 295.24195 * 14 12 11
28 28 H 1.08998 * 109.62394 * 55.60942 * 14 12 11
29 29 H 1.09000 * 109.52451 * 64.29136 * 15 14 12
30 30 H 1.09008 * 109.52336 * 184.47945 * 15 14 12
31 31 H 0.97001 * 118.71201 * 179.19821 * 18 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.1030 1.6963 -1.2124
5 1 1.2841 2.7464 -0.0006
6 1 3.1027 1.6965 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2510 -2.4992 0.0005
10 6 2.2452 -3.6621 0.0005
11 7 1.5107 -4.9342 0.0012
12 6 2.4352 -6.0759 0.0018
13 1 3.3173 -5.8299 0.5928
14 6 1.7376 -7.2995 0.6054
15 6 2.6794 -8.5031 0.4929
16 6 3.0741 -8.6857 -0.9488
17 8 3.3395 -9.7963 -1.3564
18 7 3.1431 -7.6428 -1.7895
19 6 2.8481 -6.3898 -1.4120
20 8 2.9157 -5.4928 -2.2246
21 1 -0.4851 0.8401 -0.0004
22 1 0.6247 -2.5571 -0.8897
23 1 0.6240 -2.5567 0.8902
24 1 2.8719 -3.6044 0.8906
25 1 2.8719 -3.6043 -0.8894
26 1 0.8745 -4.9841 0.7827
27 1 1.5092 -7.1102 1.6544
28 1 0.8152 -7.5008 0.0606
29 1 3.5686 -8.3276 1.0984
30 1 2.1687 -9.3994 0.8453
31 1 3.4128 -7.8014 -2.7076
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000084405530.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:04
Heat of formation + Delta-G solvation = -80.963373 kcal
Electronic energy + Delta-G solvation = -15355.041717 eV
Core-core repulsion = 12636.014148 eV
Total energy + Delta-G solvation = -2719.027569 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 226.110 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-41.45529 -38.90228 -36.47321 -35.14724 -33.51450 -32.32972 -29.60429 -26.77910
-24.08075 -23.91071 -22.65959 -20.61699 -19.24398 -17.74947 -17.25555 -16.54025
-16.16599 -15.14865 -14.87609 -14.68638 -14.54256 -14.29475 -13.98710 -13.18837
-13.06346 -12.47967 -12.25908 -11.83563 -11.36665 -11.18467 -10.90531 -10.57925
-10.47747 -10.24842 -10.14709 -10.01966 -9.37453 -9.16556 -8.35550 -8.06218
-5.99051 -4.01387 1.49088 2.66683 2.78385 3.34536 3.38870 3.41498
3.82947 4.22229 4.34737 4.48329 4.49274 4.90059 4.94656 5.10808
5.34603 5.37188 5.47374 5.71946 5.94754 6.25297 6.35106 6.77664
6.97574 7.24835 7.32998 7.63093 7.72674 7.85753 7.91518 8.06217
8.42950 9.05134 9.62176 11.12455
Molecular weight = 226.11amu
Principal moments of inertia in cm(-1)
A = 0.063444 B = 0.005054 C = 0.004880
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 441.225709 B = 5538.649349 C = 5736.326727
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.894 5.894
2 C 0.059 3.941
3 Si 0.893 3.107
4 H -0.276 1.276
5 H -0.287 1.287
6 H -0.277 1.277
7 C -0.521 4.521
8 H 0.054 0.946
9 C 0.027 3.973
10 C 0.062 3.938
11 N -0.671 5.671
12 C 0.068 3.932
13 H 0.085 0.915
14 C -0.127 4.127
15 C -0.139 4.139
16 C 0.527 3.473
17 O -0.516 6.516
18 N -0.677 5.677
19 C 0.522 3.478
20 O -0.468 6.468
21 H 0.261 0.739
22 H 0.026 0.974
23 H 0.013 0.987
24 H 0.018 0.982
25 H 0.074 0.926
26 H 0.348 0.652
27 H 0.095 0.905
28 H 0.088 0.912
29 H 0.111 0.889
30 H 0.115 0.885
31 H 0.409 0.591
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.511 -16.139 3.282 17.076
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.533 5.533
2 C -0.143 4.143
3 Si 0.721 3.279
4 H -0.202 1.202
5 H -0.213 1.213
6 H -0.203 1.203
7 C -0.560 4.560
8 H 0.072 0.928
9 C -0.010 4.010
10 C -0.066 4.066
11 N -0.304 5.304
12 C -0.046 4.046
13 H 0.103 0.897
14 C -0.165 4.165
15 C -0.180 4.180
16 C 0.316 3.684
17 O -0.390 6.390
18 N -0.343 5.343
19 C 0.308 3.692
20 O -0.336 6.336
21 H 0.071 0.929
22 H 0.045 0.955
23 H 0.032 0.968
24 H 0.036 0.964
25 H 0.092 0.908
26 H 0.169 0.831
27 H 0.114 0.886
28 H 0.107 0.893
29 H 0.129 0.871
30 H 0.133 0.867
31 H 0.248 0.752
Dipole moment (debyes) X Y Z Total
from point charges 4.367 -16.030 2.176 16.756
hybrid contribution 0.904 0.934 0.433 1.370
sum 5.271 -15.096 2.609 16.201
Atomic orbital electron populations
1.69957 1.06034 1.26715 1.50590 1.24987 0.94837 0.99192 0.95262
0.86642 0.79566 0.83082 0.78603 1.20200 1.21267 1.20302 1.21113
0.92958 0.90943 1.50996 0.92799 1.19043 0.93960 0.90302 0.97723
1.22391 0.97265 0.87439 0.99465 1.60296 1.18831 1.01169 1.50145
1.21538 0.98018 0.94006 0.91028 0.89747 1.21957 0.99168 0.91895
1.03527 1.21904 1.02458 1.01659 0.91942 1.20975 0.74821 0.83543
0.89098 1.90774 1.46096 1.24058 1.78083 1.44984 1.63859 1.09201
1.16254 1.21173 0.75205 0.81021 0.91765 1.90803 1.45547 1.44262
1.53023 0.92934 0.95517 0.96825 0.96425 0.90790 0.83132 0.88638
0.89343 0.87057 0.86699 0.75171
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.94 13.29 55.43 0.74 -26.21 16
2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16
3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16
4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
7 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16
8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16
9 C 0.03 0.70 5.23 -27.89 -0.15 0.56 16
10 C 0.06 1.27 5.29 -3.83 -0.02 1.25 16
11 N -0.67 -10.91 6.12 -107.88 -0.66 -11.56 16
12 C 0.07 0.83 2.74 -68.79 -0.19 0.64 16
13 H 0.09 0.93 7.80 -51.93 -0.41 0.53 16
14 C -0.13 -1.01 5.35 -26.49 -0.14 -1.15 16
15 C -0.14 -0.95 6.08 -27.81 -0.17 -1.12 16
16 C 0.53 5.51 7.74 -11.32 -0.09 5.42 16
17 O -0.52 -6.95 17.88 5.59 0.10 -6.85 16
18 N -0.68 -7.69 5.09 -11.75 -0.06 -7.75 16
19 C 0.52 7.35 7.56 -11.32 -0.09 7.26 16
20 O -0.47 -8.79 15.88 5.60 0.09 -8.71 16
21 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16
22 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16
23 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16
24 H 0.02 0.34 8.06 -51.93 -0.42 -0.08 16
25 H 0.07 1.66 6.70 -51.93 -0.35 1.32 16
26 H 0.35 5.00 8.37 -39.29 -0.33 4.67 16
27 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16
28 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16
29 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16
30 H 0.11 0.61 8.14 -51.92 -0.42 0.19 16
31 H 0.41 4.40 8.79 -40.82 -0.36 4.04 16
LS Contribution 268.29 15.07 4.04 4.04
Total: -1.00 -34.28 268.29 -5.96 -40.24
By element:
Atomic # 1 Polarization: 4.71 SS G_CDS: -3.94 Total: 0.77 kcal
Atomic # 6 Polarization: 0.54 SS G_CDS: -1.25 Total: -0.71 kcal
Atomic # 7 Polarization: -45.54 SS G_CDS: 0.02 Total: -45.52 kcal
Atomic # 8 Polarization: -15.75 SS G_CDS: 0.19 Total: -15.56 kcal
Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal
Total LS contribution 4.04 Total: 4.04 kcal
Total: -34.28 -5.96 -40.24 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000084405530.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.725 kcal
(2) G-P(sol) polarization free energy of solvation -34.280 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.005 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.958 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.239 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.963 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds