Wall clock time and date at job start Mon Mar 30 2020 03:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00108 * 2 1 4 4 H 1.48500 * 109.47405 * 239.99374 * 3 2 1 5 5 H 1.48503 * 109.46960 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47462 * 119.99276 * 3 2 1 7 7 C 1.37884 * 119.99855 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99589 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00159 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47187 * 179.97438 * 9 7 2 11 11 N 1.46895 * 109.46940 * 179.97438 * 10 9 7 12 12 C 1.46908 * 110.99909 * 180.02562 * 11 10 9 13 13 H 1.08999 * 109.51866 * 35.12631 * 12 11 10 14 14 C 1.53232 * 109.52425 * 155.31973 * 12 11 10 15 15 C 1.53242 * 108.56852 * 175.52098 * 14 12 11 16 16 C 1.50591 * 109.06606 * 304.20503 * 15 14 12 17 17 O 1.21237 * 119.36384 * 209.28038 * 16 15 14 18 18 N 1.34138 * 121.27961 * 29.54800 * 16 15 14 19 19 C 1.34148 * 122.58329 * 358.90555 * 18 16 15 20 20 O 1.21226 * 119.35637 * 180.82747 * 19 18 16 21 21 H 0.97005 * 120.00343 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46936 * 59.99917 * 9 7 2 23 23 H 1.08996 * 109.47070 * 300.00421 * 9 7 2 24 24 H 1.09004 * 109.47106 * 60.00198 * 10 9 7 25 25 H 1.08998 * 109.47128 * 300.00488 * 10 9 7 26 26 H 1.00900 * 111.00359 * 303.95250 * 11 10 9 27 27 H 1.09009 * 109.62399 * 295.24195 * 14 12 11 28 28 H 1.08998 * 109.62394 * 55.60942 * 14 12 11 29 29 H 1.09000 * 109.52451 * 64.29136 * 15 14 12 30 30 H 1.09008 * 109.52336 * 184.47945 * 15 14 12 31 31 H 0.97001 * 118.71201 * 179.19821 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5107 -4.9342 0.0012 12 6 2.4352 -6.0759 0.0018 13 1 3.3173 -5.8299 0.5928 14 6 1.7376 -7.2995 0.6054 15 6 2.6794 -8.5031 0.4929 16 6 3.0741 -8.6857 -0.9488 17 8 3.3395 -9.7963 -1.3564 18 7 3.1431 -7.6428 -1.7895 19 6 2.8481 -6.3898 -1.4120 20 8 2.9157 -5.4928 -2.2246 21 1 -0.4851 0.8401 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8902 24 1 2.8719 -3.6044 0.8906 25 1 2.8719 -3.6043 -0.8894 26 1 0.8745 -4.9841 0.7827 27 1 1.5092 -7.1102 1.6544 28 1 0.8152 -7.5008 0.0606 29 1 3.5686 -8.3276 1.0984 30 1 2.1687 -9.3994 0.8453 31 1 3.4128 -7.8014 -2.7076 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084405530.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:04 Heat of formation + Delta-G solvation = -109.157977 kcal Electronic energy + Delta-G solvation = -15356.264326 eV Core-core repulsion = 12636.014148 eV Total energy + Delta-G solvation = -2720.250179 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.43008 -39.97596 -37.70606 -36.32137 -35.19316 -33.72756 -31.20084 -28.14350 -25.73904 -24.88290 -23.69635 -22.40897 -20.14197 -18.75537 -18.53609 -18.17777 -17.39348 -16.57535 -16.23083 -15.89684 -15.66561 -15.51265 -15.17724 -14.74500 -14.21371 -13.89318 -13.47100 -13.22514 -12.86066 -12.78081 -12.42727 -12.15189 -11.86916 -11.52285 -11.32679 -11.29669 -11.24182 -11.16910 -10.54343 -9.38854 -8.18965 -6.29823 0.52152 1.40894 1.44439 1.52085 1.72526 1.84122 2.41780 2.96325 3.14735 3.26650 3.57448 3.71191 4.08554 4.15606 4.42978 4.57728 4.63910 4.77519 4.88547 5.07560 5.11481 5.12961 5.45152 5.67659 5.76244 5.85405 6.07982 6.24729 6.40682 6.54064 6.86081 6.87026 7.39060 8.92991 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.063444 B = 0.005054 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.225709 B = 5538.649349 C = 5736.326727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.033 3.967 10 C 0.084 3.916 11 N -0.684 5.684 12 C 0.067 3.933 13 H 0.106 0.894 14 C -0.115 4.115 15 C -0.128 4.128 16 C 0.527 3.473 17 O -0.546 6.546 18 N -0.673 5.673 19 C 0.526 3.474 20 O -0.527 6.527 21 H 0.264 0.736 22 H -0.014 1.014 23 H 0.002 0.998 24 H 0.034 0.966 25 H 0.051 0.949 26 H 0.361 0.639 27 H 0.128 0.872 28 H 0.083 0.917 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.419 -16.980 5.086 18.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.005 4.005 10 C -0.045 4.045 11 N -0.318 5.318 12 C -0.047 4.047 13 H 0.124 0.876 14 C -0.153 4.153 15 C -0.167 4.167 16 C 0.319 3.681 17 O -0.422 6.422 18 N -0.337 5.337 19 C 0.314 3.686 20 O -0.399 6.399 21 H 0.073 0.927 22 H 0.005 0.995 23 H 0.020 0.980 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.183 0.817 27 H 0.147 0.853 28 H 0.102 0.898 29 H 0.158 0.842 30 H 0.158 0.842 31 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 5.276 -16.920 4.007 18.171 hybrid contribution 0.604 1.103 -0.162 1.268 sum 5.880 -15.817 3.845 17.307 Atomic orbital electron populations 1.70090 1.07749 1.27833 1.51415 1.25938 0.95755 1.03246 0.94630 0.85510 0.78295 0.78147 0.79137 1.19729 1.20715 1.18731 1.21583 0.93472 0.92400 1.50958 0.92382 1.18892 0.94304 0.92186 0.95087 1.21883 0.95702 0.87846 0.99060 1.59991 1.19802 1.00748 1.51295 1.21735 0.98569 0.94191 0.90170 0.87632 1.21952 0.98566 0.89869 1.04932 1.22018 1.03563 1.02045 0.89091 1.21761 0.73552 0.82460 0.90321 1.90773 1.47517 1.25033 1.78853 1.44988 1.63209 1.08856 1.16693 1.21640 0.73815 0.80927 0.92207 1.90789 1.48343 1.46048 1.54719 0.92745 0.99511 0.98015 0.94835 0.93033 0.81701 0.85346 0.89799 0.84162 0.84201 0.75302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 2 C 0.00 0.14 5.46 84.66 0.46 0.60 16 3 Si 0.96 44.59 29.54 68.60 2.03 46.61 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 7 C -0.55 -31.48 9.11 25.60 0.23 -31.25 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.03 1.75 5.23 29.85 0.16 1.90 16 10 C 0.08 3.45 5.29 86.30 0.46 3.91 16 11 N -0.68 -21.62 6.12 -495.22 -3.03 -24.65 16 12 C 0.07 1.47 2.74 44.21 0.12 1.59 16 13 H 0.11 1.98 7.80 -2.39 -0.02 1.96 16 14 C -0.12 -1.37 5.35 30.75 0.16 -1.20 16 15 C -0.13 -1.19 6.08 29.89 0.18 -1.01 16 16 C 0.53 9.86 7.74 87.72 0.68 10.54 16 17 O -0.55 -13.80 17.88 -2.90 -0.05 -13.85 16 18 N -0.67 -14.74 5.09 -428.61 -2.18 -16.93 16 19 C 0.53 14.51 7.56 87.72 0.66 15.17 16 20 O -0.53 -20.38 15.88 -2.86 -0.05 -20.43 16 21 H 0.26 15.19 8.31 -92.70 -0.77 14.42 16 22 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 23 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 24 H 0.03 1.26 8.06 -2.38 -0.02 1.24 16 25 H 0.05 2.36 6.70 -2.39 -0.02 2.35 16 26 H 0.36 9.78 8.37 -89.69 -0.75 9.03 16 27 H 0.13 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.14 0.77 8.14 -2.38 -0.02 0.76 16 31 H 0.41 8.85 8.79 -92.71 -0.81 8.04 16 Total: -1.00 -77.05 268.29 -0.29 -77.34 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -0.41 Total: 8.41 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 3.12 Total: 0.25 kcal Atomic # 7 Polarization: -93.41 SS G_CDS: -4.93 Total: -98.34 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -0.10 Total: -34.28 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -77.05 -0.29 -77.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084405530.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.822 kcal (2) G-P(sol) polarization free energy of solvation -77.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds