Wall clock time and date at job start Mon Mar 30 2020 03:37:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86795 * 120.00108 * 2 1
4 4 H 1.48500 * 109.47405 * 239.99374 * 3 2 1
5 5 H 1.48503 * 109.46960 * 359.97438 * 3 2 1
6 6 H 1.48498 * 109.47462 * 119.99276 * 3 2 1
7 7 C 1.37884 * 119.99855 * 179.97438 * 2 1 3
8 8 H 1.08005 * 119.99589 * 180.02562 * 7 2 1
9 9 C 1.50697 * 120.00159 * 0.02562 * 7 2 1
10 10 C 1.52997 * 109.47187 * 179.97438 * 9 7 2
11 11 N 1.46895 * 109.46940 * 179.97438 * 10 9 7
12 12 C 1.46908 * 110.99909 * 180.02562 * 11 10 9
13 13 H 1.08999 * 109.51866 * 35.12631 * 12 11 10
14 14 C 1.53232 * 109.52425 * 155.31973 * 12 11 10
15 15 C 1.53242 * 108.56852 * 175.52098 * 14 12 11
16 16 C 1.50591 * 109.06606 * 304.20503 * 15 14 12
17 17 O 1.21237 * 119.36384 * 209.28038 * 16 15 14
18 18 N 1.34138 * 121.27961 * 29.54800 * 16 15 14
19 19 C 1.34148 * 122.58329 * 358.90555 * 18 16 15
20 20 O 1.21226 * 119.35637 * 180.82747 * 19 18 16
21 21 H 0.97005 * 120.00343 * 0.02562 * 1 2 3
22 22 H 1.09004 * 109.46936 * 59.99917 * 9 7 2
23 23 H 1.08996 * 109.47070 * 300.00421 * 9 7 2
24 24 H 1.09004 * 109.47106 * 60.00198 * 10 9 7
25 25 H 1.08998 * 109.47128 * 300.00488 * 10 9 7
26 26 H 1.00900 * 111.00359 * 303.95250 * 11 10 9
27 27 H 1.09009 * 109.62399 * 295.24195 * 14 12 11
28 28 H 1.08998 * 109.62394 * 55.60942 * 14 12 11
29 29 H 1.09000 * 109.52451 * 64.29136 * 15 14 12
30 30 H 1.09008 * 109.52336 * 184.47945 * 15 14 12
31 31 H 0.97001 * 118.71201 * 179.19821 * 18 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.1030 1.6963 -1.2124
5 1 1.2841 2.7464 -0.0006
6 1 3.1027 1.6965 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2510 -2.4992 0.0005
10 6 2.2452 -3.6621 0.0005
11 7 1.5107 -4.9342 0.0012
12 6 2.4352 -6.0759 0.0018
13 1 3.3173 -5.8299 0.5928
14 6 1.7376 -7.2995 0.6054
15 6 2.6794 -8.5031 0.4929
16 6 3.0741 -8.6857 -0.9488
17 8 3.3395 -9.7963 -1.3564
18 7 3.1431 -7.6428 -1.7895
19 6 2.8481 -6.3898 -1.4120
20 8 2.9157 -5.4928 -2.2246
21 1 -0.4851 0.8401 -0.0004
22 1 0.6247 -2.5571 -0.8897
23 1 0.6240 -2.5567 0.8902
24 1 2.8719 -3.6044 0.8906
25 1 2.8719 -3.6043 -0.8894
26 1 0.8745 -4.9841 0.7827
27 1 1.5092 -7.1102 1.6544
28 1 0.8152 -7.5008 0.0606
29 1 3.5686 -8.3276 1.0984
30 1 2.1687 -9.3994 0.8453
31 1 3.4128 -7.8014 -2.7076
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000084405530.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:04
Heat of formation + Delta-G solvation = -109.157977 kcal
Electronic energy + Delta-G solvation = -15356.264326 eV
Core-core repulsion = 12636.014148 eV
Total energy + Delta-G solvation = -2720.250179 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 226.110 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-42.43008 -39.97596 -37.70606 -36.32137 -35.19316 -33.72756 -31.20084 -28.14350
-25.73904 -24.88290 -23.69635 -22.40897 -20.14197 -18.75537 -18.53609 -18.17777
-17.39348 -16.57535 -16.23083 -15.89684 -15.66561 -15.51265 -15.17724 -14.74500
-14.21371 -13.89318 -13.47100 -13.22514 -12.86066 -12.78081 -12.42727 -12.15189
-11.86916 -11.52285 -11.32679 -11.29669 -11.24182 -11.16910 -10.54343 -9.38854
-8.18965 -6.29823 0.52152 1.40894 1.44439 1.52085 1.72526 1.84122
2.41780 2.96325 3.14735 3.26650 3.57448 3.71191 4.08554 4.15606
4.42978 4.57728 4.63910 4.77519 4.88547 5.07560 5.11481 5.12961
5.45152 5.67659 5.76244 5.85405 6.07982 6.24729 6.40682 6.54064
6.86081 6.87026 7.39060 8.92991
Molecular weight = 226.11amu
Principal moments of inertia in cm(-1)
A = 0.063444 B = 0.005054 C = 0.004880
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 441.225709 B = 5538.649349 C = 5736.326727
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.931 5.931
2 C 0.002 3.998
3 Si 0.965 3.035
4 H -0.272 1.272
5 H -0.282 1.282
6 H -0.263 1.263
7 C -0.546 4.546
8 H 0.058 0.942
9 C 0.033 3.967
10 C 0.084 3.916
11 N -0.684 5.684
12 C 0.067 3.933
13 H 0.106 0.894
14 C -0.115 4.115
15 C -0.128 4.128
16 C 0.527 3.473
17 O -0.546 6.546
18 N -0.673 5.673
19 C 0.526 3.474
20 O -0.527 6.527
21 H 0.264 0.736
22 H -0.014 1.014
23 H 0.002 0.998
24 H 0.034 0.966
25 H 0.051 0.949
26 H 0.361 0.639
27 H 0.128 0.872
28 H 0.083 0.917
29 H 0.141 0.859
30 H 0.140 0.860
31 H 0.408 0.592
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.419 -16.980 5.086 18.535
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.571 5.571
2 C -0.196 4.196
3 Si 0.789 3.211
4 H -0.197 1.197
5 H -0.207 1.207
6 H -0.187 1.187
7 C -0.584 4.584
8 H 0.076 0.924
9 C -0.005 4.005
10 C -0.045 4.045
11 N -0.318 5.318
12 C -0.047 4.047
13 H 0.124 0.876
14 C -0.153 4.153
15 C -0.167 4.167
16 C 0.319 3.681
17 O -0.422 6.422
18 N -0.337 5.337
19 C 0.314 3.686
20 O -0.399 6.399
21 H 0.073 0.927
22 H 0.005 0.995
23 H 0.020 0.980
24 H 0.052 0.948
25 H 0.070 0.930
26 H 0.183 0.817
27 H 0.147 0.853
28 H 0.102 0.898
29 H 0.158 0.842
30 H 0.158 0.842
31 H 0.247 0.753
Dipole moment (debyes) X Y Z Total
from point charges 5.276 -16.920 4.007 18.171
hybrid contribution 0.604 1.103 -0.162 1.268
sum 5.880 -15.817 3.845 17.307
Atomic orbital electron populations
1.70090 1.07749 1.27833 1.51415 1.25938 0.95755 1.03246 0.94630
0.85510 0.78295 0.78147 0.79137 1.19729 1.20715 1.18731 1.21583
0.93472 0.92400 1.50958 0.92382 1.18892 0.94304 0.92186 0.95087
1.21883 0.95702 0.87846 0.99060 1.59991 1.19802 1.00748 1.51295
1.21735 0.98569 0.94191 0.90170 0.87632 1.21952 0.98566 0.89869
1.04932 1.22018 1.03563 1.02045 0.89091 1.21761 0.73552 0.82460
0.90321 1.90773 1.47517 1.25033 1.78853 1.44988 1.63209 1.08856
1.16693 1.21640 0.73815 0.80927 0.92207 1.90789 1.48343 1.46048
1.54719 0.92745 0.99511 0.98015 0.94835 0.93033 0.81701 0.85346
0.89799 0.84162 0.84201 0.75302
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16
2 C 0.00 0.14 5.46 84.66 0.46 0.60 16
3 Si 0.96 44.59 29.54 68.60 2.03 46.61 16
4 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16
5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16
6 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16
7 C -0.55 -31.48 9.11 25.60 0.23 -31.25 16
8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16
9 C 0.03 1.75 5.23 29.85 0.16 1.90 16
10 C 0.08 3.45 5.29 86.30 0.46 3.91 16
11 N -0.68 -21.62 6.12 -495.22 -3.03 -24.65 16
12 C 0.07 1.47 2.74 44.21 0.12 1.59 16
13 H 0.11 1.98 7.80 -2.39 -0.02 1.96 16
14 C -0.12 -1.37 5.35 30.75 0.16 -1.20 16
15 C -0.13 -1.19 6.08 29.89 0.18 -1.01 16
16 C 0.53 9.86 7.74 87.72 0.68 10.54 16
17 O -0.55 -13.80 17.88 -2.90 -0.05 -13.85 16
18 N -0.67 -14.74 5.09 -428.61 -2.18 -16.93 16
19 C 0.53 14.51 7.56 87.72 0.66 15.17 16
20 O -0.53 -20.38 15.88 -2.86 -0.05 -20.43 16
21 H 0.26 15.19 8.31 -92.70 -0.77 14.42 16
22 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16
23 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16
24 H 0.03 1.26 8.06 -2.38 -0.02 1.24 16
25 H 0.05 2.36 6.70 -2.39 -0.02 2.35 16
26 H 0.36 9.78 8.37 -89.69 -0.75 9.03 16
27 H 0.13 0.82 8.14 -2.38 -0.02 0.80 16
28 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16
29 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16
30 H 0.14 0.77 8.14 -2.38 -0.02 0.76 16
31 H 0.41 8.85 8.79 -92.71 -0.81 8.04 16
Total: -1.00 -77.05 268.29 -0.29 -77.34
By element:
Atomic # 1 Polarization: 8.82 SS G_CDS: -0.41 Total: 8.41 kcal
Atomic # 6 Polarization: -2.87 SS G_CDS: 3.12 Total: 0.25 kcal
Atomic # 7 Polarization: -93.41 SS G_CDS: -4.93 Total: -98.34 kcal
Atomic # 8 Polarization: -34.18 SS G_CDS: -0.10 Total: -34.28 kcal
Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal
Total: -77.05 -0.29 -77.34 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000084405530.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.822 kcal
(2) G-P(sol) polarization free energy of solvation -77.047 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.869 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.289 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.336 kcal
(6) G-S(sol) free energy of system = (1) + (5) -109.158 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds