Wall clock time and date at job start Mon Mar 30 2020 03:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46954 * 2 1 4 4 C 1.52996 * 109.47172 * 120.00305 * 2 1 3 5 5 C 1.50699 * 109.47169 * 295.00010 * 4 2 1 6 6 H 1.07998 * 119.99935 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00106 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99702 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99744 * 359.97438 * 7 5 4 10 10 H 1.48492 * 109.47159 * 90.00174 * 9 7 5 11 11 H 1.48501 * 109.46614 * 210.00146 * 9 7 5 12 12 H 1.48492 * 109.47063 * 329.99873 * 9 7 5 13 13 C 1.50704 * 109.46871 * 240.00219 * 2 1 3 14 14 C 1.38262 * 119.96340 * 120.00021 * 13 2 1 15 15 C 1.38207 * 120.06798 * 180.02562 * 14 13 2 16 16 C 1.38415 * 120.00267 * 359.97438 * 15 14 13 17 17 F 1.35099 * 120.03879 * 179.72758 * 16 15 14 18 18 C 1.38651 * 119.92527 * 0.02562 * 16 15 14 19 19 F 1.35101 * 120.02914 * 180.02562 * 18 16 15 20 20 C 1.38210 * 119.96326 * 300.02578 * 13 2 1 21 21 H 1.09000 * 109.46900 * 300.00205 * 1 2 3 22 22 H 1.08999 * 109.47200 * 59.99397 * 1 2 3 23 23 H 1.09000 * 109.47412 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.47081 * 54.99794 * 4 2 1 25 25 H 1.09000 * 109.47007 * 174.99636 * 4 2 1 26 26 H 0.97002 * 119.99433 * 180.02562 * 8 7 5 27 27 H 1.08001 * 119.96481 * 0.02562 * 14 13 2 28 28 H 1.08000 * 120.00298 * 179.97438 * 15 14 13 29 29 H 1.08000 * 120.00226 * 359.97438 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0569 2.4765 6 1 1.0807 0.9744 2.3757 7 6 1.9933 -0.4019 3.7282 8 7 1.6458 0.2776 4.7993 9 14 2.9637 -1.9886 3.9026 10 1 4.4171 -1.6852 3.8778 11 1 2.6163 -2.6422 5.1900 12 1 2.6289 -2.8995 2.7788 13 6 2.0323 -0.7104 -1.2305 14 6 2.8271 -0.0377 -2.1402 15 6 3.2885 -0.6869 -3.2696 16 6 2.9555 -2.0121 -3.4909 17 9 3.4015 -2.6458 -4.5975 18 6 2.1584 -2.6866 -2.5787 19 9 1.8324 -3.9801 -2.7923 20 6 1.6975 -2.0334 -1.4488 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.6053 -1.7199 1.2950 25 1 3.1263 -0.7996 1.2054 26 1 1.8937 -0.0450 5.6798 27 1 3.0877 0.9961 -1.9679 28 1 3.9090 -0.1604 -3.9797 29 1 1.0765 -2.5578 -0.7375 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107607725.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:00 Heat of formation + Delta-G solvation = -100.890327 kcal Electronic energy + Delta-G solvation = -15042.273789 eV Core-core repulsion = 12179.001855 eV Total energy + Delta-G solvation = -2863.271933 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.49249 -49.57526 -40.37114 -36.62686 -34.32076 -31.77898 -30.80369 -29.09577 -25.58430 -24.38226 -23.38998 -21.00097 -19.18534 -18.78386 -18.03265 -17.76385 -17.32798 -16.30094 -16.01034 -15.64116 -15.45205 -15.24679 -14.78085 -14.72488 -14.05602 -13.96391 -13.42051 -13.32848 -12.88574 -12.62813 -12.41708 -12.20498 -11.82582 -11.61761 -11.33559 -11.15420 -10.72587 -10.02012 -9.55912 -8.25349 -6.27034 -0.06620 0.05370 1.35752 1.38473 1.48243 2.37374 2.41153 2.80141 3.10684 3.31894 3.58934 3.71233 4.06273 4.21104 4.35270 4.52519 4.63394 4.79858 4.92077 4.97498 5.04739 5.07499 5.20344 5.35916 5.39624 5.48689 5.69206 5.73956 5.81469 6.33195 6.80877 7.36841 8.90837 Molecular weight = 226.09amu Principal moments of inertia in cm(-1) A = 0.035533 B = 0.007132 C = 0.006625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.808188 B = 3925.254711 C = 4225.424030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.039 4.039 3 H 0.082 0.918 4 C -0.004 4.004 5 C -0.516 4.516 6 H 0.045 0.955 7 C 0.008 3.992 8 N -0.950 5.950 9 Si 0.936 3.064 10 H -0.269 1.269 11 H -0.288 1.288 12 H -0.250 1.250 13 C -0.049 4.049 14 C -0.093 4.093 15 C -0.109 4.109 16 C 0.042 3.958 17 F -0.139 7.139 18 C 0.051 3.949 19 F -0.142 7.142 20 C -0.130 4.130 21 H 0.046 0.954 22 H 0.066 0.934 23 H 0.050 0.950 24 H 0.018 0.982 25 H 0.015 0.985 26 H 0.264 0.736 27 H 0.166 0.834 28 H 0.177 0.823 29 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.657 -2.816 -16.618 17.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.057 4.057 3 H 0.101 0.899 4 C -0.041 4.041 5 C -0.554 4.554 6 H 0.063 0.937 7 C -0.189 4.189 8 N -0.591 5.591 9 Si 0.761 3.239 10 H -0.194 1.194 11 H -0.214 1.214 12 H -0.174 1.174 13 C -0.050 4.050 14 C -0.111 4.111 15 C -0.127 4.127 16 C 0.022 3.978 17 F -0.118 7.118 18 C 0.031 3.969 19 F -0.121 7.121 20 C -0.149 4.149 21 H 0.066 0.934 22 H 0.085 0.915 23 H 0.069 0.931 24 H 0.036 0.964 25 H 0.033 0.967 26 H 0.073 0.927 27 H 0.184 0.816 28 H 0.195 0.805 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.665 -2.901 -16.495 16.959 hybrid contribution 0.237 -1.093 0.575 1.257 sum 2.902 -3.994 -15.920 16.668 Atomic orbital electron populations 1.21705 0.93980 1.01626 1.01351 1.20053 0.96480 0.99012 0.90177 0.89930 1.19612 0.95943 0.95834 0.92751 1.21427 1.34336 1.08843 0.90787 0.93668 1.25858 0.96949 1.00313 0.95745 1.70048 1.49009 1.41387 0.98705 0.85862 0.79485 0.80630 0.77927 1.19417 1.21376 1.17410 1.20119 0.95786 0.92836 0.96216 1.21376 0.95741 1.01843 0.92119 1.21354 1.00839 0.90990 0.99539 1.17860 1.01403 0.93108 0.85462 1.91484 1.87764 1.82314 1.50222 1.17834 1.02062 0.79574 0.97395 1.91475 1.91350 1.34374 1.94896 1.21020 1.02043 0.95710 0.96080 0.93440 0.91538 0.93101 0.96369 0.96675 0.92706 0.81633 0.80531 0.84182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 8.82 71.98 0.63 -3.61 15 2 C -0.04 -1.33 2.51 -11.54 -0.03 -1.36 15 3 H 0.08 2.75 7.87 -2.39 -0.02 2.73 15 4 C 0.00 -0.18 3.26 29.85 0.10 -0.08 15 5 C -0.52 -27.92 8.96 25.60 0.23 -27.69 15 6 H 0.05 2.66 7.30 -2.91 -0.02 2.63 15 7 C 0.01 0.46 5.47 84.66 0.46 0.92 15 8 N -0.95 -58.23 13.96 21.45 0.30 -57.93 15 9 Si 0.94 43.59 27.47 68.60 1.88 45.48 15 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 15 12 H -0.25 -10.93 6.54 99.48 0.65 -10.28 15 13 C -0.05 -1.40 4.78 -19.86 -0.09 -1.50 15 14 C -0.09 -2.07 9.67 22.27 0.22 -1.85 15 15 C -0.11 -2.22 10.02 22.30 0.22 -1.99 15 16 C 0.04 1.07 7.31 22.41 0.16 1.24 15 17 F -0.14 -3.69 17.18 44.97 0.77 -2.92 15 18 C 0.05 1.49 7.31 22.41 0.16 1.65 15 19 F -0.14 -4.38 17.18 44.97 0.77 -3.60 15 20 C -0.13 -3.83 8.74 22.30 0.19 -3.63 15 21 H 0.05 1.80 6.95 -2.39 -0.02 1.78 15 22 H 0.07 1.79 8.14 -2.39 -0.02 1.77 15 23 H 0.05 1.61 7.38 -2.39 -0.02 1.59 15 24 H 0.02 0.79 6.63 -2.38 -0.02 0.78 15 25 H 0.01 0.65 7.57 -2.39 -0.02 0.63 15 26 H 0.26 15.23 8.31 -92.71 -0.77 14.46 15 27 H 0.17 2.83 7.94 -2.91 -0.02 2.81 15 28 H 0.18 2.35 8.06 -2.91 -0.02 2.33 15 29 H 0.14 4.20 7.16 -2.91 -0.02 4.18 15 Total: -1.00 -62.57 256.70 7.09 -55.48 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: 1.10 Total: 1.39 kcal Atomic # 6 Polarization: -40.17 SS G_CDS: 2.26 Total: -37.90 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: 0.30 Total: -57.93 kcal Atomic # 9 Polarization: -8.06 SS G_CDS: 1.55 Total: -6.52 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.88 Total: 45.48 kcal Total: -62.57 7.09 -55.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107607725.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.412 kcal (2) G-P(sol) polarization free energy of solvation -62.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds