Wall clock time and date at job start Mon Mar 30 2020 03:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86808 * 119.99489 * 2 1 4 4 H 1.48500 * 109.47073 * 239.99714 * 3 2 1 5 5 H 1.48494 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46775 * 120.00179 * 3 2 1 7 7 C 1.38940 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00418 * 180.02562 * 7 2 1 9 9 N 1.37093 * 120.00097 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00481 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99839 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00315 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.46990 * 179.97438 * 12 10 9 14 14 C 1.46805 * 110.99801 * 58.12487 * 13 12 10 15 15 C 1.53019 * 109.89171 * 170.54444 * 14 13 12 16 16 C 1.52915 * 109.22467 * 62.70601 * 15 14 13 17 17 C 1.51422 * 108.35962 * 307.80092 * 16 15 14 18 18 O 1.20763 * 121.00716 * 229.02783 * 17 16 15 19 19 C 1.47093 * 111.00357 * 293.95407 * 13 12 10 20 20 H 0.97003 * 120.00447 * 0.02562 * 1 2 3 21 21 H 0.97003 * 120.00030 * 0.02562 * 9 7 2 22 22 H 1.08999 * 109.47115 * 60.00195 * 12 10 9 23 23 H 1.08999 * 109.46979 * 300.00002 * 12 10 9 24 24 H 1.08994 * 109.39904 * 290.67269 * 14 13 12 25 25 H 1.09000 * 109.39854 * 50.41544 * 14 13 12 26 26 H 1.09002 * 109.52224 * 182.74952 * 15 14 13 27 27 H 1.08998 * 109.52741 * 302.95252 * 15 14 13 28 28 H 1.08999 * 109.67435 * 188.03608 * 16 15 14 29 29 H 1.09001 * 109.55824 * 67.49789 * 16 15 14 30 30 H 1.08993 * 109.62247 * 60.54221 * 19 13 12 31 31 H 1.08998 * 109.78038 * 300.06656 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.1018 1.6966 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1017 1.6965 1.2125 7 6 2.0088 -1.2032 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3235 -2.3905 -0.0005 10 6 1.9973 -3.5577 -0.0005 11 8 3.2103 -3.5577 -0.0001 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 3.0906 -5.9094 1.1623 15 6 3.9113 -7.1965 1.2674 16 6 4.7966 -7.3318 0.0279 17 6 3.9229 -7.1872 -1.2003 18 8 3.9850 -7.9843 -2.1053 19 6 2.9650 -6.0172 -1.2566 20 1 -0.4851 0.8400 -0.0004 21 1 0.3534 -2.3906 -0.0005 22 1 0.6176 -4.9204 -0.8914 23 1 0.6169 -4.9208 0.8886 24 1 3.7633 -5.0589 1.0522 25 1 2.4958 -5.7842 2.0671 26 1 4.5355 -7.1586 2.1603 27 1 3.2398 -8.0530 1.3271 28 1 5.2767 -8.3104 0.0249 29 1 5.5552 -6.5491 0.0341 30 1 3.5261 -5.0898 -1.3709 31 1 2.2857 -6.1404 -2.1000 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134150962.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:20 Heat of formation + Delta-G solvation = -70.695216 kcal Electronic energy + Delta-G solvation = -15793.585684 eV Core-core repulsion = 13075.003376 eV Total energy + Delta-G solvation = -2718.582308 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.94008 -38.53077 -36.42108 -34.05229 -32.80213 -31.38368 -28.99437 -27.51641 -24.88013 -23.07919 -21.90067 -19.41268 -18.89802 -17.94743 -16.16080 -15.93987 -15.57038 -14.83311 -14.74576 -14.69180 -14.08539 -13.90376 -13.58845 -13.14097 -12.71605 -12.30175 -12.02821 -11.64639 -11.47159 -11.17166 -10.95199 -10.71930 -10.63808 -10.51113 -10.32836 -9.57231 -9.41431 -9.24079 -8.09278 -7.56901 -6.53222 -3.95116 2.10999 3.11014 3.19106 3.22737 3.72344 4.07457 4.16612 4.39258 4.84773 5.01104 5.07540 5.10721 5.18592 5.57554 5.60298 5.75050 5.89046 5.90452 5.98236 6.03777 6.13166 6.21214 6.25587 6.62739 7.10224 7.25119 7.43452 7.66625 7.91946 8.46165 9.04166 9.39735 9.89325 10.62975 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.049643 B = 0.006138 C = 0.006065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.891641 B = 4560.523687 C = 4615.487610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.026 3.974 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.306 4.306 8 H 0.103 0.897 9 N -0.551 5.551 10 C 0.403 3.597 11 O -0.598 6.598 12 C 0.041 3.959 13 N -0.505 5.505 14 C 0.024 3.976 15 C -0.106 4.106 16 C -0.170 4.170 17 C 0.377 3.623 18 O -0.469 6.469 19 C -0.008 4.008 20 H 0.274 0.726 21 H 0.394 0.606 22 H 0.091 0.909 23 H 0.095 0.905 24 H 0.090 0.910 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.819 -8.898 2.270 9.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.758 3.242 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.436 4.436 8 H 0.121 0.879 9 N -0.186 5.186 10 C 0.189 3.811 11 O -0.486 6.486 12 C -0.091 4.091 13 N -0.230 5.230 14 C -0.103 4.103 15 C -0.144 4.144 16 C -0.208 4.208 17 C 0.253 3.747 18 O -0.342 6.342 19 C -0.136 4.136 20 H 0.084 0.916 21 H 0.227 0.773 22 H 0.109 0.891 23 H 0.113 0.887 24 H 0.108 0.892 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.116 0.884 30 H 0.120 0.880 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.231 -9.597 1.817 10.288 hybrid contribution 0.147 1.782 0.017 1.788 sum 3.378 -7.816 1.834 8.710 Atomic orbital electron populations 1.69596 1.06001 1.28574 1.49465 1.25303 0.95629 0.99902 0.96839 0.85911 0.78826 0.80341 0.79124 1.19836 1.20839 1.19828 1.19676 0.93405 0.82352 1.48133 0.87917 1.42043 1.09390 1.04918 1.62230 1.21031 0.88787 0.85955 0.85345 1.90378 1.13922 1.86834 1.57468 1.22078 0.95230 0.87831 1.03966 1.62637 1.17673 1.40981 1.01666 1.22509 0.96690 0.98331 0.92797 1.21456 0.97791 0.98949 0.96251 1.22273 0.99313 1.03988 0.95222 1.24854 0.80956 0.83176 0.85715 1.90363 1.64208 1.40816 1.38861 1.23002 0.97296 0.99055 0.94206 0.91584 0.77264 0.89060 0.88711 0.89197 0.90957 0.90598 0.91389 0.89821 0.88377 0.87995 0.89109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.57 13.05 55.49 0.72 -22.85 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.36 29.55 -169.99 -5.02 15.33 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.31 -8.15 9.68 -14.94 -0.14 -8.29 16 8 H 0.10 2.86 7.16 -52.48 -0.38 2.49 16 9 N -0.55 -13.19 5.29 -10.96 -0.06 -13.24 16 10 C 0.40 8.71 7.17 -10.99 -0.08 8.63 16 11 O -0.60 -14.32 11.23 5.54 0.06 -14.26 16 12 C 0.04 0.68 5.83 -4.97 -0.03 0.65 16 13 N -0.50 -8.09 4.86 -237.04 -1.15 -9.25 16 14 C 0.02 0.37 4.81 -3.87 -0.02 0.35 16 15 C -0.11 -1.30 6.11 -26.77 -0.16 -1.47 16 16 C -0.17 -2.18 6.21 -27.57 -0.17 -2.35 16 17 C 0.38 5.95 6.88 -28.38 -0.20 5.76 16 18 O -0.47 -8.53 17.90 6.00 0.11 -8.42 16 19 C -0.01 -0.12 5.39 -4.57 -0.02 -0.15 16 20 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 21 H 0.39 9.07 7.90 -40.82 -0.32 8.74 16 22 H 0.09 1.39 8.12 -51.93 -0.42 0.97 16 23 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 24 H 0.09 1.64 5.47 -51.93 -0.28 1.35 16 25 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.10 1.92 5.91 -51.93 -0.31 1.61 16 31 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 260.59 15.07 3.93 3.93 Total: -1.00 -29.28 260.59 -6.14 -35.42 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -3.80 Total: 9.64 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -0.92 Total: 3.70 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -0.49 Total: -45.34 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: 0.17 Total: -22.68 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.28 -6.14 -35.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134150962.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.279 kcal (2) G-P(sol) polarization free energy of solvation -29.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds