Wall clock time and date at job start Mon Mar 30 2020 03:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86808 * 119.99489 * 2 1 4 4 H 1.48500 * 109.47073 * 239.99714 * 3 2 1 5 5 H 1.48494 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46775 * 120.00179 * 3 2 1 7 7 C 1.38940 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00418 * 180.02562 * 7 2 1 9 9 N 1.37093 * 120.00097 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00481 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99839 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00315 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.46990 * 179.97438 * 12 10 9 14 14 C 1.46805 * 110.99801 * 58.12487 * 13 12 10 15 15 C 1.53019 * 109.89171 * 170.54444 * 14 13 12 16 16 C 1.52915 * 109.22467 * 62.70601 * 15 14 13 17 17 C 1.51422 * 108.35962 * 307.80092 * 16 15 14 18 18 O 1.20763 * 121.00716 * 229.02783 * 17 16 15 19 19 C 1.47093 * 111.00357 * 293.95407 * 13 12 10 20 20 H 0.97003 * 120.00447 * 0.02562 * 1 2 3 21 21 H 0.97003 * 120.00030 * 0.02562 * 9 7 2 22 22 H 1.08999 * 109.47115 * 60.00195 * 12 10 9 23 23 H 1.08999 * 109.46979 * 300.00002 * 12 10 9 24 24 H 1.08994 * 109.39904 * 290.67269 * 14 13 12 25 25 H 1.09000 * 109.39854 * 50.41544 * 14 13 12 26 26 H 1.09002 * 109.52224 * 182.74952 * 15 14 13 27 27 H 1.08998 * 109.52741 * 302.95252 * 15 14 13 28 28 H 1.08999 * 109.67435 * 188.03608 * 16 15 14 29 29 H 1.09001 * 109.55824 * 67.49789 * 16 15 14 30 30 H 1.08993 * 109.62247 * 60.54221 * 19 13 12 31 31 H 1.08998 * 109.78038 * 300.06656 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.1018 1.6966 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1017 1.6965 1.2125 7 6 2.0088 -1.2032 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3235 -2.3905 -0.0005 10 6 1.9973 -3.5577 -0.0005 11 8 3.2103 -3.5577 -0.0001 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 3.0906 -5.9094 1.1623 15 6 3.9113 -7.1965 1.2674 16 6 4.7966 -7.3318 0.0279 17 6 3.9229 -7.1872 -1.2003 18 8 3.9850 -7.9843 -2.1053 19 6 2.9650 -6.0172 -1.2566 20 1 -0.4851 0.8400 -0.0004 21 1 0.3534 -2.3906 -0.0005 22 1 0.6176 -4.9204 -0.8914 23 1 0.6169 -4.9208 0.8886 24 1 3.7633 -5.0589 1.0522 25 1 2.4958 -5.7842 2.0671 26 1 4.5355 -7.1586 2.1603 27 1 3.2398 -8.0530 1.3271 28 1 5.2767 -8.3104 0.0249 29 1 5.5552 -6.5491 0.0341 30 1 3.5261 -5.0898 -1.3709 31 1 2.2857 -6.1404 -2.1000 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134150962.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:20 Heat of formation + Delta-G solvation = -92.395719 kcal Electronic energy + Delta-G solvation = -15794.526688 eV Core-core repulsion = 13075.003376 eV Total energy + Delta-G solvation = -2719.523313 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.32968 -40.10095 -37.87522 -35.89167 -34.04512 -33.27938 -30.31062 -28.94097 -26.64061 -24.39880 -23.16200 -21.11506 -20.24591 -19.76242 -17.82786 -17.25548 -16.93301 -16.53004 -16.10988 -15.92255 -15.77444 -15.50825 -15.15232 -14.53215 -13.98085 -13.59787 -13.49837 -13.33266 -13.07188 -12.66385 -12.45280 -12.24307 -12.14951 -11.86717 -11.79169 -11.39159 -11.01832 -10.54535 -10.00885 -9.10385 -8.47249 -5.97004 0.83919 1.37430 1.41147 1.51219 1.99666 2.28112 2.88608 3.14172 3.19414 3.26529 3.78380 3.96224 4.09103 4.33845 4.40418 4.43751 4.59916 4.63409 4.72202 4.86153 4.95353 4.97082 5.15516 5.36606 5.42473 5.74727 5.94142 6.00992 6.40428 6.56918 7.10071 7.53702 8.07262 8.67970 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.049643 B = 0.006138 C = 0.006065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.891641 B = 4560.523687 C = 4615.487610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.011 4.011 3 Si 0.990 3.010 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.081 0.919 9 N -0.567 5.567 10 C 0.408 3.592 11 O -0.621 6.621 12 C 0.048 3.952 13 N -0.496 5.496 14 C 0.022 3.978 15 C -0.097 4.097 16 C -0.165 4.165 17 C 0.380 3.620 18 O -0.495 6.495 19 C -0.008 4.008 20 H 0.278 0.722 21 H 0.397 0.603 22 H 0.110 0.890 23 H 0.120 0.880 24 H 0.058 0.942 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.078 0.922 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.904 -9.733 3.043 10.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.211 4.211 3 Si 0.814 3.186 4 H -0.199 1.199 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.464 4.464 8 H 0.099 0.901 9 N -0.203 5.203 10 C 0.195 3.805 11 O -0.509 6.509 12 C -0.083 4.083 13 N -0.221 5.221 14 C -0.106 4.106 15 C -0.135 4.135 16 C -0.203 4.203 17 C 0.257 3.743 18 O -0.370 6.370 19 C -0.136 4.136 20 H 0.087 0.913 21 H 0.230 0.770 22 H 0.128 0.872 23 H 0.138 0.862 24 H 0.076 0.924 25 H 0.100 0.900 26 H 0.121 0.879 27 H 0.096 0.904 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.094 0.906 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.314 -10.450 2.601 11.267 hybrid contribution 0.155 1.955 -0.226 1.974 sum 3.468 -8.495 2.375 9.478 Atomic orbital electron populations 1.69657 1.06841 1.29422 1.49922 1.26018 0.96471 1.02432 0.96202 0.85029 0.77798 0.76879 0.78895 1.19882 1.19650 1.19630 1.19637 0.92762 0.84106 1.49934 0.90121 1.42113 1.09460 1.04962 1.63756 1.22041 0.88765 0.86993 0.82728 1.90388 1.15434 1.87552 1.57563 1.22185 0.95195 0.84873 1.06067 1.62729 1.17739 1.39848 1.01750 1.22547 0.96418 0.98938 0.92657 1.21451 0.97748 0.97384 0.96927 1.22297 0.98954 1.05356 0.93678 1.25116 0.80702 0.82128 0.86307 1.90358 1.64980 1.41639 1.40038 1.22968 0.97484 0.98493 0.94686 0.91261 0.76951 0.87230 0.86177 0.92354 0.89981 0.87902 0.90377 0.87770 0.87824 0.90553 0.88937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.24 13.05 21.66 0.28 -47.96 16 2 C -0.01 -0.57 5.50 84.92 0.47 -0.10 16 3 Si 0.99 41.71 29.55 68.60 2.03 43.73 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.33 -18.16 9.68 84.04 0.81 -17.35 16 8 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 9 N -0.57 -27.40 5.29 -306.99 -1.62 -29.03 16 10 C 0.41 17.62 7.17 87.66 0.63 18.25 16 11 O -0.62 -30.20 11.23 -3.08 -0.03 -30.23 16 12 C 0.05 1.54 5.83 85.56 0.50 2.03 16 13 N -0.50 -15.09 4.86 -903.87 -4.40 -19.49 16 14 C 0.02 0.62 4.81 86.33 0.42 1.04 16 15 C -0.10 -2.08 6.11 30.57 0.19 -1.90 16 16 C -0.17 -3.83 6.21 30.05 0.19 -3.65 16 17 C 0.38 11.51 6.88 29.53 0.20 11.71 16 18 O -0.50 -17.48 17.90 -1.46 -0.03 -17.51 16 19 C -0.01 -0.26 5.39 85.72 0.46 0.20 16 20 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 21 H 0.40 18.37 7.90 -92.71 -0.73 17.63 16 22 H 0.11 3.13 8.12 -2.39 -0.02 3.11 16 23 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16 24 H 0.06 2.09 5.47 -2.39 -0.01 2.08 16 25 H 0.08 2.18 8.08 -2.39 -0.02 2.16 16 26 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.08 2.92 5.91 -2.39 -0.01 2.91 16 31 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -62.95 260.59 0.51 -62.44 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 0.41 Total: 27.79 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 3.86 Total: 10.25 kcal Atomic # 7 Polarization: -90.74 SS G_CDS: -5.74 Total: -96.48 kcal Atomic # 8 Polarization: -47.68 SS G_CDS: -0.06 Total: -47.74 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Total: -62.95 0.51 -62.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134150962.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.956 kcal (2) G-P(sol) polarization free energy of solvation -62.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds