Wall clock time and date at job start Mon Mar 30 2020 03:06:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31509 * 1
3 3 Si 1.86798 * 120.00556 * 2 1
4 4 H 1.48492 * 109.47335 * 270.00192 * 3 2 1
5 5 H 1.48503 * 109.46659 * 30.00358 * 3 2 1
6 6 H 1.48503 * 109.47015 * 149.99884 * 3 2 1
7 7 C 1.37882 * 119.99495 * 180.02562 * 2 1 3
8 8 H 1.08004 * 120.00250 * 359.97438 * 7 2 1
9 9 C 1.50708 * 119.99900 * 179.97438 * 7 2 1
10 10 C 1.52994 * 109.46997 * 179.97438 * 9 7 2
11 11 C 1.50700 * 109.62862 * 60.37943 * 10 9 7
12 12 O 1.20826 * 119.99545 * 119.61613 * 11 10 9
13 13 O 1.34223 * 119.99919 * 299.62338 * 11 10 9
14 14 C 1.53235 * 109.78299 * 180.86318 * 10 9 7
15 15 C 1.52951 * 109.41904 * 65.18278 * 14 10 9
16 16 C 1.52965 * 109.81766 * 63.57924 * 15 14 10
17 17 C 1.53229 * 109.41314 * 296.42326 * 16 15 14
18 18 C 1.51265 * 108.53774 * 54.62221 * 17 16 15
19 19 O 1.20756 * 120.85097 * 128.67385 * 18 17 16
20 20 H 0.97001 * 119.99806 * 359.97438 * 1 2 3
21 21 H 1.09000 * 109.46912 * 59.99750 * 9 7 2
22 22 H 1.08992 * 109.47251 * 300.00107 * 9 7 2
23 23 H 0.96696 * 117.00251 * 179.97438 * 13 11 10
24 24 H 1.08995 * 109.48217 * 185.16280 * 14 10 9
25 25 H 1.09000 * 109.47893 * 305.19989 * 14 10 9
26 26 H 1.09000 * 109.40572 * 303.48672 * 15 14 10
27 27 H 1.08995 * 109.42920 * 183.69204 * 15 14 10
28 28 H 1.09002 * 109.48383 * 176.43545 * 16 15 14
29 29 H 1.08999 * 109.47882 * 56.40908 * 16 15 14
30 30 H 1.09007 * 109.62533 * 174.33345 * 17 16 15
31 31 H 1.08993 * 109.62941 * 294.90222 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 2.4968 2.0463 -1.4000
5 1 1.4467 2.6526 0.7001
6 1 3.5468 1.4399 0.7001
7 6 2.0044 -1.1942 -0.0005
8 1 1.4643 -2.1295 -0.0005
9 6 3.5115 -1.1943 -0.0011
10 6 4.0213 -2.6367 -0.0010
11 6 3.5281 -3.3481 -1.2346
12 8 4.3192 -3.8004 -2.0280
13 8 2.2101 -3.4791 -1.4519
14 6 5.5535 -2.6453 0.0201
15 6 6.0472 -2.0489 1.3392
16 6 5.5947 -2.9273 2.5070
17 6 4.0641 -2.9293 2.5795
18 6 3.5195 -3.3529 1.2333
19 8 2.7046 -4.2398 1.1463
20 1 -0.4850 0.8401 0.0004
21 1 3.8752 -0.6806 0.8888
22 1 3.8745 -0.6803 -0.8910
23 1 1.9418 -3.9427 -2.2570
24 1 5.9126 -3.6702 -0.0723
25 1 5.9318 -2.0509 -0.8116
26 1 5.6365 -1.0465 1.4597
27 1 7.1357 -1.9944 1.3276
28 1 6.0022 -2.5328 3.4378
29 1 5.9529 -3.9456 2.3560
30 1 3.7348 -3.6318 3.3451
31 1 3.7076 -1.9278 2.8200
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000143359803.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:06:14
Heat of formation + Delta-G solvation = -144.421193 kcal
Electronic energy + Delta-G solvation = -16664.524582 eV
Core-core repulsion = 13910.452525 eV
Total energy + Delta-G solvation = -2754.072058 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 226.104 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-40.56599 -38.52271 -36.36507 -35.25315 -33.36407 -31.75412 -29.37714 -27.19150
-24.04587 -22.31777 -21.57411 -20.81238 -17.97026 -17.37169 -16.90451 -16.17357
-15.41843 -14.96501 -14.35605 -14.14099 -13.92709 -13.55151 -13.08545 -12.82386
-12.54715 -12.46009 -11.90648 -11.75877 -11.41536 -10.97878 -10.79987 -10.70855
-10.63259 -10.47893 -10.21837 -9.77372 -9.69909 -9.25591 -8.79556 -8.59586
-6.08503 -4.08985 2.55555 2.89361 3.23407 3.30253 3.32287 3.74146
4.36787 4.54253 4.94537 4.98587 5.11325 5.22152 5.26379 5.53508
5.65564 5.76531 5.83751 5.98326 6.06491 6.16633 6.20912 6.25710
6.40075 6.47993 6.82865 6.93496 7.23454 7.57615 8.03118 8.43810
8.68765 9.12105 9.50004 11.03866
Molecular weight = 226.10amu
Principal moments of inertia in cm(-1)
A = 0.023790 B = 0.012887 C = 0.011078
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1176.698023 B = 2172.149776 C = 2526.906545
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.892 5.892
2 C 0.075 3.925
3 Si 0.867 3.133
4 H -0.277 1.277
5 H -0.286 1.286
6 H -0.264 1.264
7 C -0.531 4.531
8 H 0.100 0.900
9 C 0.003 3.997
10 C -0.089 4.089
11 C 0.514 3.486
12 O -0.546 6.546
13 O -0.465 6.465
14 C -0.097 4.097
15 C -0.127 4.127
16 C -0.113 4.113
17 C -0.165 4.165
18 C 0.395 3.605
19 O -0.449 6.449
20 H 0.263 0.737
21 H 0.042 0.958
22 H 0.027 0.973
23 H 0.390 0.610
24 H 0.068 0.932
25 H 0.078 0.922
26 H 0.078 0.922
27 H 0.070 0.930
28 H 0.073 0.927
29 H 0.063 0.937
30 H 0.086 0.914
31 H 0.108 0.892
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.850 -2.931 3.531 11.781
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.530 5.530
2 C -0.128 4.128
3 Si 0.695 3.305
4 H -0.202 1.202
5 H -0.212 1.212
6 H -0.189 1.189
7 C -0.568 4.568
8 H 0.118 0.882
9 C -0.034 4.034
10 C -0.091 4.091
11 C 0.358 3.642
12 O -0.438 6.438
13 O -0.271 6.271
14 C -0.135 4.135
15 C -0.164 4.164
16 C -0.150 4.150
17 C -0.202 4.202
18 C 0.269 3.731
19 O -0.321 6.321
20 H 0.073 0.927
21 H 0.060 0.940
22 H 0.045 0.955
23 H 0.246 0.754
24 H 0.087 0.913
25 H 0.097 0.903
26 H 0.096 0.904
27 H 0.089 0.911
28 H 0.092 0.908
29 H 0.082 0.918
30 H 0.105 0.895
31 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges 10.555 -3.202 3.649 11.617
hybrid contribution 0.135 0.849 -0.692 1.104
sum 10.689 -2.353 2.956 11.337
Atomic orbital electron populations
1.69903 1.06191 1.26783 1.50117 1.24950 0.94667 0.98605 0.94537
0.86985 0.80481 0.84382 0.78701 1.20233 1.21177 1.18905 1.21366
0.88231 0.95929 1.51322 0.88197 1.19711 0.98800 0.86490 0.98424
1.21410 0.96578 1.00562 0.90580 1.22750 0.80449 0.74637 0.86378
1.90604 1.57134 1.48173 1.47851 1.84973 1.24941 1.71051 1.46141
1.21518 0.91197 1.02223 0.98574 1.21665 1.00728 1.00370 0.93671
1.21531 0.93892 1.00484 0.99134 1.22251 0.96824 1.05020 0.96137
1.24136 0.78134 0.79726 0.91060 1.90383 1.26118 1.26859 1.88740
0.92652 0.94002 0.95515 0.75441 0.91302 0.90338 0.90377 0.91128
0.90844 0.91793 0.89519 0.87413
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.67 13.96 55.43 0.77 -25.90 16
2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16
3 Si 0.87 20.36 27.47 -169.99 -4.67 15.70 16
4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16
5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16
6 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16
7 C -0.53 -14.28 8.05 -34.43 -0.28 -14.55 16
8 H 0.10 2.99 5.83 -52.48 -0.31 2.69 16
9 C 0.00 0.07 2.82 -27.88 -0.08 -0.01 16
10 C -0.09 -1.77 0.50 -156.41 -0.08 -1.85 16
11 C 0.51 11.11 6.48 36.01 0.23 11.34 16
12 O -0.55 -11.98 16.69 -18.75 -0.31 -12.29 16
13 O -0.46 -10.09 9.97 -44.59 -0.44 -10.53 16
14 C -0.10 -1.55 4.06 -26.64 -0.11 -1.66 16
15 C -0.13 -1.61 5.65 -26.77 -0.15 -1.77 16
16 C -0.11 -1.35 5.94 -26.63 -0.16 -1.51 16
17 C -0.16 -2.50 5.90 -27.49 -0.16 -2.66 16
18 C 0.40 7.82 4.97 -28.48 -0.14 7.68 16
19 O -0.45 -10.27 16.37 -8.63 -0.14 -10.41 16
20 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
21 H 0.04 0.86 5.06 -51.93 -0.26 0.60 16
22 H 0.03 0.59 7.57 -51.93 -0.39 0.20 16
23 H 0.39 6.38 9.10 45.56 0.41 6.79 16
24 H 0.07 1.06 7.96 -51.93 -0.41 0.65 16
25 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16
26 H 0.08 1.04 6.42 -51.93 -0.33 0.71 16
27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
30 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16
31 H 0.11 1.65 7.82 -51.93 -0.41 1.24 16
LS Contribution 253.82 15.07 3.83 3.83
Total: -1.00 -33.03 253.82 -4.97 -38.00
By element:
Atomic # 1 Polarization: 7.60 SS G_CDS: -2.98 Total: 4.62 kcal
Atomic # 6 Polarization: -1.99 SS G_CDS: -1.02 Total: -3.01 kcal
Atomic # 7 Polarization: -26.67 SS G_CDS: 0.77 Total: -25.90 kcal
Atomic # 8 Polarization: -32.33 SS G_CDS: -0.90 Total: -33.23 kcal
Atomic # 14 Polarization: 20.36 SS G_CDS: -4.67 Total: 15.70 kcal
Total LS contribution 3.83 Total: 3.83 kcal
Total: -33.03 -4.97 -38.00 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000143359803.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -106.423 kcal
(2) G-P(sol) polarization free energy of solvation -33.030 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.453 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.968 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.998 kcal
(6) G-S(sol) free energy of system = (1) + (5) -144.421 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds