Wall clock time and date at job start Mon Mar 30 2020 03:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00556 * 2 1 4 4 H 1.48492 * 109.47335 * 270.00192 * 3 2 1 5 5 H 1.48503 * 109.46659 * 30.00358 * 3 2 1 6 6 H 1.48503 * 109.47015 * 149.99884 * 3 2 1 7 7 C 1.37882 * 119.99495 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00250 * 359.97438 * 7 2 1 9 9 C 1.50708 * 119.99900 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.46997 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.62862 * 60.37943 * 10 9 7 12 12 O 1.20826 * 119.99545 * 119.61613 * 11 10 9 13 13 O 1.34223 * 119.99919 * 299.62338 * 11 10 9 14 14 C 1.53235 * 109.78299 * 180.86318 * 10 9 7 15 15 C 1.52951 * 109.41904 * 65.18278 * 14 10 9 16 16 C 1.52965 * 109.81766 * 63.57924 * 15 14 10 17 17 C 1.53229 * 109.41314 * 296.42326 * 16 15 14 18 18 C 1.51265 * 108.53774 * 54.62221 * 17 16 15 19 19 O 1.20756 * 120.85097 * 128.67385 * 18 17 16 20 20 H 0.97001 * 119.99806 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.46912 * 59.99750 * 9 7 2 22 22 H 1.08992 * 109.47251 * 300.00107 * 9 7 2 23 23 H 0.96696 * 117.00251 * 179.97438 * 13 11 10 24 24 H 1.08995 * 109.48217 * 185.16280 * 14 10 9 25 25 H 1.09000 * 109.47893 * 305.19989 * 14 10 9 26 26 H 1.09000 * 109.40572 * 303.48672 * 15 14 10 27 27 H 1.08995 * 109.42920 * 183.69204 * 15 14 10 28 28 H 1.09002 * 109.48383 * 176.43545 * 16 15 14 29 29 H 1.08999 * 109.47882 * 56.40908 * 16 15 14 30 30 H 1.09007 * 109.62533 * 174.33345 * 17 16 15 31 31 H 1.08993 * 109.62941 * 294.90222 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4399 0.7001 7 6 2.0044 -1.1942 -0.0005 8 1 1.4643 -2.1295 -0.0005 9 6 3.5115 -1.1943 -0.0011 10 6 4.0213 -2.6367 -0.0010 11 6 3.5281 -3.3481 -1.2346 12 8 4.3192 -3.8004 -2.0280 13 8 2.2101 -3.4791 -1.4519 14 6 5.5535 -2.6453 0.0201 15 6 6.0472 -2.0489 1.3392 16 6 5.5947 -2.9273 2.5070 17 6 4.0641 -2.9293 2.5795 18 6 3.5195 -3.3529 1.2333 19 8 2.7046 -4.2398 1.1463 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6806 0.8888 22 1 3.8745 -0.6803 -0.8910 23 1 1.9418 -3.9427 -2.2570 24 1 5.9126 -3.6702 -0.0723 25 1 5.9318 -2.0509 -0.8116 26 1 5.6365 -1.0465 1.4597 27 1 7.1357 -1.9944 1.3276 28 1 6.0022 -2.5328 3.4378 29 1 5.9529 -3.9456 2.3560 30 1 3.7348 -3.6318 3.3451 31 1 3.7076 -1.9278 2.8200 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000143359803.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:14 Heat of formation + Delta-G solvation = -144.421193 kcal Electronic energy + Delta-G solvation = -16664.524582 eV Core-core repulsion = 13910.452525 eV Total energy + Delta-G solvation = -2754.072058 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.56599 -38.52271 -36.36507 -35.25315 -33.36407 -31.75412 -29.37714 -27.19150 -24.04587 -22.31777 -21.57411 -20.81238 -17.97026 -17.37169 -16.90451 -16.17357 -15.41843 -14.96501 -14.35605 -14.14099 -13.92709 -13.55151 -13.08545 -12.82386 -12.54715 -12.46009 -11.90648 -11.75877 -11.41536 -10.97878 -10.79987 -10.70855 -10.63259 -10.47893 -10.21837 -9.77372 -9.69909 -9.25591 -8.79556 -8.59586 -6.08503 -4.08985 2.55555 2.89361 3.23407 3.30253 3.32287 3.74146 4.36787 4.54253 4.94537 4.98587 5.11325 5.22152 5.26379 5.53508 5.65564 5.76531 5.83751 5.98326 6.06491 6.16633 6.20912 6.25710 6.40075 6.47993 6.82865 6.93496 7.23454 7.57615 8.03118 8.43810 8.68765 9.12105 9.50004 11.03866 Molecular weight = 226.10amu Principal moments of inertia in cm(-1) A = 0.023790 B = 0.012887 C = 0.011078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.698023 B = 2172.149776 C = 2526.906545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.075 3.925 3 Si 0.867 3.133 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.531 4.531 8 H 0.100 0.900 9 C 0.003 3.997 10 C -0.089 4.089 11 C 0.514 3.486 12 O -0.546 6.546 13 O -0.465 6.465 14 C -0.097 4.097 15 C -0.127 4.127 16 C -0.113 4.113 17 C -0.165 4.165 18 C 0.395 3.605 19 O -0.449 6.449 20 H 0.263 0.737 21 H 0.042 0.958 22 H 0.027 0.973 23 H 0.390 0.610 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.850 -2.931 3.531 11.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.128 4.128 3 Si 0.695 3.305 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.568 4.568 8 H 0.118 0.882 9 C -0.034 4.034 10 C -0.091 4.091 11 C 0.358 3.642 12 O -0.438 6.438 13 O -0.271 6.271 14 C -0.135 4.135 15 C -0.164 4.164 16 C -0.150 4.150 17 C -0.202 4.202 18 C 0.269 3.731 19 O -0.321 6.321 20 H 0.073 0.927 21 H 0.060 0.940 22 H 0.045 0.955 23 H 0.246 0.754 24 H 0.087 0.913 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 10.555 -3.202 3.649 11.617 hybrid contribution 0.135 0.849 -0.692 1.104 sum 10.689 -2.353 2.956 11.337 Atomic orbital electron populations 1.69903 1.06191 1.26783 1.50117 1.24950 0.94667 0.98605 0.94537 0.86985 0.80481 0.84382 0.78701 1.20233 1.21177 1.18905 1.21366 0.88231 0.95929 1.51322 0.88197 1.19711 0.98800 0.86490 0.98424 1.21410 0.96578 1.00562 0.90580 1.22750 0.80449 0.74637 0.86378 1.90604 1.57134 1.48173 1.47851 1.84973 1.24941 1.71051 1.46141 1.21518 0.91197 1.02223 0.98574 1.21665 1.00728 1.00370 0.93671 1.21531 0.93892 1.00484 0.99134 1.22251 0.96824 1.05020 0.96137 1.24136 0.78134 0.79726 0.91060 1.90383 1.26118 1.26859 1.88740 0.92652 0.94002 0.95515 0.75441 0.91302 0.90338 0.90377 0.91128 0.90844 0.91793 0.89519 0.87413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.67 13.96 55.43 0.77 -25.90 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.87 20.36 27.47 -169.99 -4.67 15.70 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 7 C -0.53 -14.28 8.05 -34.43 -0.28 -14.55 16 8 H 0.10 2.99 5.83 -52.48 -0.31 2.69 16 9 C 0.00 0.07 2.82 -27.88 -0.08 -0.01 16 10 C -0.09 -1.77 0.50 -156.41 -0.08 -1.85 16 11 C 0.51 11.11 6.48 36.01 0.23 11.34 16 12 O -0.55 -11.98 16.69 -18.75 -0.31 -12.29 16 13 O -0.46 -10.09 9.97 -44.59 -0.44 -10.53 16 14 C -0.10 -1.55 4.06 -26.64 -0.11 -1.66 16 15 C -0.13 -1.61 5.65 -26.77 -0.15 -1.77 16 16 C -0.11 -1.35 5.94 -26.63 -0.16 -1.51 16 17 C -0.16 -2.50 5.90 -27.49 -0.16 -2.66 16 18 C 0.40 7.82 4.97 -28.48 -0.14 7.68 16 19 O -0.45 -10.27 16.37 -8.63 -0.14 -10.41 16 20 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 21 H 0.04 0.86 5.06 -51.93 -0.26 0.60 16 22 H 0.03 0.59 7.57 -51.93 -0.39 0.20 16 23 H 0.39 6.38 9.10 45.56 0.41 6.79 16 24 H 0.07 1.06 7.96 -51.93 -0.41 0.65 16 25 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.08 1.04 6.42 -51.93 -0.33 0.71 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.11 1.65 7.82 -51.93 -0.41 1.24 16 LS Contribution 253.82 15.07 3.83 3.83 Total: -1.00 -33.03 253.82 -4.97 -38.00 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -2.98 Total: 4.62 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -1.02 Total: -3.01 kcal Atomic # 7 Polarization: -26.67 SS G_CDS: 0.77 Total: -25.90 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -0.90 Total: -33.23 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.67 Total: 15.70 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -33.03 -4.97 -38.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000143359803.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.423 kcal (2) G-P(sol) polarization free energy of solvation -33.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds