Wall clock time and date at job start Mon Mar 30 2020 03:06:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31509 * 1
3 3 Si 1.86798 * 120.00556 * 2 1
4 4 H 1.48492 * 109.47335 * 270.00192 * 3 2 1
5 5 H 1.48503 * 109.46659 * 30.00358 * 3 2 1
6 6 H 1.48503 * 109.47015 * 149.99884 * 3 2 1
7 7 C 1.37882 * 119.99495 * 180.02562 * 2 1 3
8 8 H 1.08004 * 120.00250 * 359.97438 * 7 2 1
9 9 C 1.50708 * 119.99900 * 179.97438 * 7 2 1
10 10 C 1.52994 * 109.46997 * 179.97438 * 9 7 2
11 11 C 1.50700 * 109.62862 * 60.37943 * 10 9 7
12 12 O 1.20826 * 119.99545 * 119.61613 * 11 10 9
13 13 O 1.34223 * 119.99919 * 299.62338 * 11 10 9
14 14 C 1.53235 * 109.78299 * 180.86318 * 10 9 7
15 15 C 1.52951 * 109.41904 * 65.18278 * 14 10 9
16 16 C 1.52965 * 109.81766 * 63.57924 * 15 14 10
17 17 C 1.53229 * 109.41314 * 296.42326 * 16 15 14
18 18 C 1.51265 * 108.53774 * 54.62221 * 17 16 15
19 19 O 1.20756 * 120.85097 * 128.67385 * 18 17 16
20 20 H 0.97001 * 119.99806 * 359.97438 * 1 2 3
21 21 H 1.09000 * 109.46912 * 59.99750 * 9 7 2
22 22 H 1.08992 * 109.47251 * 300.00107 * 9 7 2
23 23 H 0.96696 * 117.00251 * 179.97438 * 13 11 10
24 24 H 1.08995 * 109.48217 * 185.16280 * 14 10 9
25 25 H 1.09000 * 109.47893 * 305.19989 * 14 10 9
26 26 H 1.09000 * 109.40572 * 303.48672 * 15 14 10
27 27 H 1.08995 * 109.42920 * 183.69204 * 15 14 10
28 28 H 1.09002 * 109.48383 * 176.43545 * 16 15 14
29 29 H 1.08999 * 109.47882 * 56.40908 * 16 15 14
30 30 H 1.09007 * 109.62533 * 174.33345 * 17 16 15
31 31 H 1.08993 * 109.62941 * 294.90222 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 2.4968 2.0463 -1.4000
5 1 1.4467 2.6526 0.7001
6 1 3.5468 1.4399 0.7001
7 6 2.0044 -1.1942 -0.0005
8 1 1.4643 -2.1295 -0.0005
9 6 3.5115 -1.1943 -0.0011
10 6 4.0213 -2.6367 -0.0010
11 6 3.5281 -3.3481 -1.2346
12 8 4.3192 -3.8004 -2.0280
13 8 2.2101 -3.4791 -1.4519
14 6 5.5535 -2.6453 0.0201
15 6 6.0472 -2.0489 1.3392
16 6 5.5947 -2.9273 2.5070
17 6 4.0641 -2.9293 2.5795
18 6 3.5195 -3.3529 1.2333
19 8 2.7046 -4.2398 1.1463
20 1 -0.4850 0.8401 0.0004
21 1 3.8752 -0.6806 0.8888
22 1 3.8745 -0.6803 -0.8910
23 1 1.9418 -3.9427 -2.2570
24 1 5.9126 -3.6702 -0.0723
25 1 5.9318 -2.0509 -0.8116
26 1 5.6365 -1.0465 1.4597
27 1 7.1357 -1.9944 1.3276
28 1 6.0022 -2.5328 3.4378
29 1 5.9529 -3.9456 2.3560
30 1 3.7348 -3.6318 3.3451
31 1 3.7076 -1.9278 2.8200
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000143359803.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:06:13
Heat of formation + Delta-G solvation = -167.298461 kcal
Electronic energy + Delta-G solvation = -16665.516615 eV
Core-core repulsion = 13910.452525 eV
Total energy + Delta-G solvation = -2755.064090 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 226.104 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-42.12971 -40.13777 -37.80768 -36.95994 -35.13071 -33.43273 -30.74710 -28.87145
-25.41512 -24.23153 -22.89725 -22.17805 -19.46401 -19.13413 -18.70723 -17.84187
-17.06329 -16.44419 -16.11124 -15.56994 -15.27232 -15.11568 -14.69356 -14.23415
-14.09907 -13.89225 -13.56097 -13.48151 -12.75193 -12.54539 -12.40031 -12.11636
-12.03738 -11.81083 -11.64699 -11.41279 -11.33231 -11.15547 -10.72534 -10.26744
-8.19536 -6.25090 1.03579 1.19734 1.41188 1.41670 1.51762 2.22366
2.41237 3.11183 3.13869 3.66795 3.82805 4.05526 4.11253 4.21085
4.40618 4.45953 4.60154 4.77091 4.97466 5.00376 5.07929 5.13361
5.17015 5.25634 5.32380 5.48350 5.61772 5.63710 6.34802 6.52828
6.92027 7.10671 7.37416 8.96461
Molecular weight = 226.10amu
Principal moments of inertia in cm(-1)
A = 0.023790 B = 0.012887 C = 0.011078
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1176.698023 B = 2172.149776 C = 2526.906545
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.948 5.948
2 C 0.010 3.990
3 Si 0.935 3.065
4 H -0.276 1.276
5 H -0.289 1.289
6 H -0.225 1.225
7 C -0.529 4.529
8 H 0.057 0.943
9 C 0.008 3.992
10 C -0.097 4.097
11 C 0.503 3.497
12 O -0.554 6.554
13 O -0.486 6.486
14 C -0.095 4.095
15 C -0.124 4.124
16 C -0.106 4.106
17 C -0.162 4.162
18 C 0.386 3.614
19 O -0.494 6.494
20 H 0.263 0.737
21 H 0.068 0.932
22 H 0.031 0.969
23 H 0.405 0.595
24 H 0.070 0.930
25 H 0.081 0.919
26 H 0.077 0.923
27 H 0.106 0.894
28 H 0.110 0.890
29 H 0.072 0.928
30 H 0.096 0.904
31 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.089 -1.694 4.809 14.983
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.589 5.589
2 C -0.187 4.187
3 Si 0.758 3.242
4 H -0.202 1.202
5 H -0.215 1.215
6 H -0.147 1.147
7 C -0.567 4.567
8 H 0.075 0.925
9 C -0.029 4.029
10 C -0.099 4.099
11 C 0.348 3.652
12 O -0.447 6.447
13 O -0.295 6.295
14 C -0.132 4.132
15 C -0.161 4.161
16 C -0.144 4.144
17 C -0.200 4.200
18 C 0.263 3.737
19 O -0.369 6.369
20 H 0.072 0.928
21 H 0.086 0.914
22 H 0.049 0.951
23 H 0.264 0.736
24 H 0.089 0.911
25 H 0.099 0.901
26 H 0.095 0.905
27 H 0.125 0.875
28 H 0.128 0.872
29 H 0.090 0.910
30 H 0.115 0.885
31 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges 13.832 -1.977 4.926 14.815
hybrid contribution -0.953 0.335 -1.161 1.539
sum 12.878 -1.641 3.766 13.518
Atomic orbital electron populations
1.70085 1.08476 1.27783 1.52564 1.25905 0.95427 1.03013 0.94362
0.85901 0.80543 0.78775 0.78981 1.20202 1.21502 1.14740 1.21565
0.90929 0.94287 1.49892 0.92541 1.19630 0.95364 0.88388 0.99545
1.21627 0.99520 0.98867 0.89896 1.23334 0.80125 0.74704 0.87058
1.90577 1.57107 1.48715 1.48327 1.84964 1.25684 1.71450 1.47430
1.21616 0.87677 1.02900 1.01034 1.21720 1.02867 0.99857 0.91627
1.21592 0.90811 1.01300 1.00651 1.22346 0.99469 1.05011 0.93126
1.24937 0.77015 0.78714 0.93040 1.90364 1.28012 1.29017 1.89539
0.92802 0.91374 0.95118 0.73603 0.91126 0.90056 0.90475 0.87530
0.87210 0.90976 0.88499 0.87205
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -58.51 13.96 21.45 0.30 -58.21 16
2 C 0.01 0.55 5.47 84.66 0.46 1.01 16
3 Si 0.93 40.97 27.47 68.60 1.88 42.85 16
4 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16
5 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16
6 H -0.22 -8.36 6.54 99.48 0.65 -7.71 16
7 C -0.53 -28.75 8.05 25.60 0.21 -28.55 16
8 H 0.06 3.53 5.83 -2.91 -0.02 3.52 16
9 C 0.01 0.34 2.82 29.85 0.08 0.42 16
10 C -0.10 -3.75 0.50 -53.42 -0.03 -3.78 16
11 C 0.50 21.95 6.48 71.24 0.46 22.42 16
12 O -0.55 -24.29 16.69 21.96 0.37 -23.92 16
13 O -0.49 -22.06 9.97 -46.23 -0.46 -22.52 16
14 C -0.09 -2.72 4.06 30.66 0.12 -2.59 16
15 C -0.12 -2.51 5.65 30.57 0.17 -2.34 16
16 C -0.11 -2.03 5.94 30.66 0.18 -1.84 16
17 C -0.16 -4.49 5.90 30.10 0.18 -4.31 16
18 C 0.39 15.03 4.97 29.46 0.15 15.17 16
19 O -0.49 -23.20 16.37 12.56 0.21 -22.99 16
20 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16
21 H 0.07 2.55 5.06 -2.39 -0.01 2.54 16
22 H 0.03 1.29 7.57 -2.39 -0.02 1.27 16
23 H 0.41 14.10 9.10 -74.06 -0.67 13.43 16
24 H 0.07 2.00 7.96 -2.39 -0.02 1.98 16
25 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16
26 H 0.08 1.62 6.42 -2.39 -0.02 1.61 16
27 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16
28 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16
29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16
30 H 0.10 2.47 8.14 -2.38 -0.02 2.45 16
31 H 0.11 3.03 7.82 -2.39 -0.02 3.01 16
Total: -1.00 -74.28 253.82 4.71 -69.57
By element:
Atomic # 1 Polarization: 19.18 SS G_CDS: 0.42 Total: 19.60 kcal
Atomic # 6 Polarization: -6.38 SS G_CDS: 1.99 Total: -4.39 kcal
Atomic # 7 Polarization: -58.51 SS G_CDS: 0.30 Total: -58.21 kcal
Atomic # 8 Polarization: -69.54 SS G_CDS: 0.11 Total: -69.43 kcal
Atomic # 14 Polarization: 40.97 SS G_CDS: 1.88 Total: 42.85 kcal
Total: -74.28 4.71 -69.57 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000143359803.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -97.731 kcal
(2) G-P(sol) polarization free energy of solvation -74.277 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.008 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.710 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.567 kcal
(6) G-S(sol) free energy of system = (1) + (5) -167.298 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds