Wall clock time and date at job start Mon Mar 30 2020 03:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00556 * 2 1 4 4 H 1.48492 * 109.47335 * 270.00192 * 3 2 1 5 5 H 1.48503 * 109.46659 * 30.00358 * 3 2 1 6 6 H 1.48503 * 109.47015 * 149.99884 * 3 2 1 7 7 C 1.37882 * 119.99495 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00250 * 359.97438 * 7 2 1 9 9 C 1.50708 * 119.99900 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.46997 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.62862 * 60.37943 * 10 9 7 12 12 O 1.20826 * 119.99545 * 119.61613 * 11 10 9 13 13 O 1.34223 * 119.99919 * 299.62338 * 11 10 9 14 14 C 1.53235 * 109.78299 * 180.86318 * 10 9 7 15 15 C 1.52951 * 109.41904 * 65.18278 * 14 10 9 16 16 C 1.52965 * 109.81766 * 63.57924 * 15 14 10 17 17 C 1.53229 * 109.41314 * 296.42326 * 16 15 14 18 18 C 1.51265 * 108.53774 * 54.62221 * 17 16 15 19 19 O 1.20756 * 120.85097 * 128.67385 * 18 17 16 20 20 H 0.97001 * 119.99806 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.46912 * 59.99750 * 9 7 2 22 22 H 1.08992 * 109.47251 * 300.00107 * 9 7 2 23 23 H 0.96696 * 117.00251 * 179.97438 * 13 11 10 24 24 H 1.08995 * 109.48217 * 185.16280 * 14 10 9 25 25 H 1.09000 * 109.47893 * 305.19989 * 14 10 9 26 26 H 1.09000 * 109.40572 * 303.48672 * 15 14 10 27 27 H 1.08995 * 109.42920 * 183.69204 * 15 14 10 28 28 H 1.09002 * 109.48383 * 176.43545 * 16 15 14 29 29 H 1.08999 * 109.47882 * 56.40908 * 16 15 14 30 30 H 1.09007 * 109.62533 * 174.33345 * 17 16 15 31 31 H 1.08993 * 109.62941 * 294.90222 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4399 0.7001 7 6 2.0044 -1.1942 -0.0005 8 1 1.4643 -2.1295 -0.0005 9 6 3.5115 -1.1943 -0.0011 10 6 4.0213 -2.6367 -0.0010 11 6 3.5281 -3.3481 -1.2346 12 8 4.3192 -3.8004 -2.0280 13 8 2.2101 -3.4791 -1.4519 14 6 5.5535 -2.6453 0.0201 15 6 6.0472 -2.0489 1.3392 16 6 5.5947 -2.9273 2.5070 17 6 4.0641 -2.9293 2.5795 18 6 3.5195 -3.3529 1.2333 19 8 2.7046 -4.2398 1.1463 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6806 0.8888 22 1 3.8745 -0.6803 -0.8910 23 1 1.9418 -3.9427 -2.2570 24 1 5.9126 -3.6702 -0.0723 25 1 5.9318 -2.0509 -0.8116 26 1 5.6365 -1.0465 1.4597 27 1 7.1357 -1.9944 1.3276 28 1 6.0022 -2.5328 3.4378 29 1 5.9529 -3.9456 2.3560 30 1 3.7348 -3.6318 3.3451 31 1 3.7076 -1.9278 2.8200 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000143359803.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:13 Heat of formation + Delta-G solvation = -167.298461 kcal Electronic energy + Delta-G solvation = -16665.516615 eV Core-core repulsion = 13910.452525 eV Total energy + Delta-G solvation = -2755.064090 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.12971 -40.13777 -37.80768 -36.95994 -35.13071 -33.43273 -30.74710 -28.87145 -25.41512 -24.23153 -22.89725 -22.17805 -19.46401 -19.13413 -18.70723 -17.84187 -17.06329 -16.44419 -16.11124 -15.56994 -15.27232 -15.11568 -14.69356 -14.23415 -14.09907 -13.89225 -13.56097 -13.48151 -12.75193 -12.54539 -12.40031 -12.11636 -12.03738 -11.81083 -11.64699 -11.41279 -11.33231 -11.15547 -10.72534 -10.26744 -8.19536 -6.25090 1.03579 1.19734 1.41188 1.41670 1.51762 2.22366 2.41237 3.11183 3.13869 3.66795 3.82805 4.05526 4.11253 4.21085 4.40618 4.45953 4.60154 4.77091 4.97466 5.00376 5.07929 5.13361 5.17015 5.25634 5.32380 5.48350 5.61772 5.63710 6.34802 6.52828 6.92027 7.10671 7.37416 8.96461 Molecular weight = 226.10amu Principal moments of inertia in cm(-1) A = 0.023790 B = 0.012887 C = 0.011078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.698023 B = 2172.149776 C = 2526.906545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.010 3.990 3 Si 0.935 3.065 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.225 1.225 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.008 3.992 10 C -0.097 4.097 11 C 0.503 3.497 12 O -0.554 6.554 13 O -0.486 6.486 14 C -0.095 4.095 15 C -0.124 4.124 16 C -0.106 4.106 17 C -0.162 4.162 18 C 0.386 3.614 19 O -0.494 6.494 20 H 0.263 0.737 21 H 0.068 0.932 22 H 0.031 0.969 23 H 0.405 0.595 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.106 0.894 28 H 0.110 0.890 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.089 -1.694 4.809 14.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.187 4.187 3 Si 0.758 3.242 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.147 1.147 7 C -0.567 4.567 8 H 0.075 0.925 9 C -0.029 4.029 10 C -0.099 4.099 11 C 0.348 3.652 12 O -0.447 6.447 13 O -0.295 6.295 14 C -0.132 4.132 15 C -0.161 4.161 16 C -0.144 4.144 17 C -0.200 4.200 18 C 0.263 3.737 19 O -0.369 6.369 20 H 0.072 0.928 21 H 0.086 0.914 22 H 0.049 0.951 23 H 0.264 0.736 24 H 0.089 0.911 25 H 0.099 0.901 26 H 0.095 0.905 27 H 0.125 0.875 28 H 0.128 0.872 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 13.832 -1.977 4.926 14.815 hybrid contribution -0.953 0.335 -1.161 1.539 sum 12.878 -1.641 3.766 13.518 Atomic orbital electron populations 1.70085 1.08476 1.27783 1.52564 1.25905 0.95427 1.03013 0.94362 0.85901 0.80543 0.78775 0.78981 1.20202 1.21502 1.14740 1.21565 0.90929 0.94287 1.49892 0.92541 1.19630 0.95364 0.88388 0.99545 1.21627 0.99520 0.98867 0.89896 1.23334 0.80125 0.74704 0.87058 1.90577 1.57107 1.48715 1.48327 1.84964 1.25684 1.71450 1.47430 1.21616 0.87677 1.02900 1.01034 1.21720 1.02867 0.99857 0.91627 1.21592 0.90811 1.01300 1.00651 1.22346 0.99469 1.05011 0.93126 1.24937 0.77015 0.78714 0.93040 1.90364 1.28012 1.29017 1.89539 0.92802 0.91374 0.95118 0.73603 0.91126 0.90056 0.90475 0.87530 0.87210 0.90976 0.88499 0.87205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.51 13.96 21.45 0.30 -58.21 16 2 C 0.01 0.55 5.47 84.66 0.46 1.01 16 3 Si 0.93 40.97 27.47 68.60 1.88 42.85 16 4 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 6 H -0.22 -8.36 6.54 99.48 0.65 -7.71 16 7 C -0.53 -28.75 8.05 25.60 0.21 -28.55 16 8 H 0.06 3.53 5.83 -2.91 -0.02 3.52 16 9 C 0.01 0.34 2.82 29.85 0.08 0.42 16 10 C -0.10 -3.75 0.50 -53.42 -0.03 -3.78 16 11 C 0.50 21.95 6.48 71.24 0.46 22.42 16 12 O -0.55 -24.29 16.69 21.96 0.37 -23.92 16 13 O -0.49 -22.06 9.97 -46.23 -0.46 -22.52 16 14 C -0.09 -2.72 4.06 30.66 0.12 -2.59 16 15 C -0.12 -2.51 5.65 30.57 0.17 -2.34 16 16 C -0.11 -2.03 5.94 30.66 0.18 -1.84 16 17 C -0.16 -4.49 5.90 30.10 0.18 -4.31 16 18 C 0.39 15.03 4.97 29.46 0.15 15.17 16 19 O -0.49 -23.20 16.37 12.56 0.21 -22.99 16 20 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 21 H 0.07 2.55 5.06 -2.39 -0.01 2.54 16 22 H 0.03 1.29 7.57 -2.39 -0.02 1.27 16 23 H 0.41 14.10 9.10 -74.06 -0.67 13.43 16 24 H 0.07 2.00 7.96 -2.39 -0.02 1.98 16 25 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.08 1.62 6.42 -2.39 -0.02 1.61 16 27 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.10 2.47 8.14 -2.38 -0.02 2.45 16 31 H 0.11 3.03 7.82 -2.39 -0.02 3.01 16 Total: -1.00 -74.28 253.82 4.71 -69.57 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.42 Total: 19.60 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 1.99 Total: -4.39 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: 0.30 Total: -58.21 kcal Atomic # 8 Polarization: -69.54 SS G_CDS: 0.11 Total: -69.43 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 1.88 Total: 42.85 kcal Total: -74.28 4.71 -69.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000143359803.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.731 kcal (2) G-P(sol) polarization free energy of solvation -74.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds