Wall clock time and date at job start Mon Mar 30 2020 02:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47235 * 2 1 4 4 N 1.46910 * 109.46991 * 119.99282 * 2 1 3 5 5 C 1.52992 * 109.47105 * 239.99198 * 2 1 3 6 6 H 1.09002 * 109.47103 * 185.00012 * 5 2 1 7 7 C 1.52997 * 109.47482 * 305.00259 * 5 2 1 8 8 C 1.50708 * 109.47025 * 65.00443 * 5 2 1 9 9 C 1.34855 * 122.09815 * 274.99910 * 8 5 2 10 10 S 1.71044 * 109.23154 * 179.97438 * 9 8 5 11 11 C 1.76080 * 90.38912 * 0.02562 * 10 9 8 12 12 C 1.39917 * 125.55527 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00524 * 179.97438 * 12 11 10 14 14 C 1.40255 * 119.99597 * 359.97300 * 12 11 10 15 15 N 1.30692 * 119.99821 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99593 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47065 * 90.00081 * 16 14 12 18 18 H 1.48501 * 109.46773 * 209.99853 * 16 14 12 19 19 H 1.48495 * 109.47243 * 329.99839 * 16 14 12 20 20 N 1.30448 * 122.10164 * 94.70768 * 8 5 2 21 21 H 1.08998 * 109.47494 * 60.00265 * 1 2 3 22 22 H 1.08993 * 109.47314 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47198 * 300.00584 * 1 2 3 24 24 H 1.00896 * 110.99608 * 176.04392 * 4 2 1 25 25 H 1.00895 * 110.99898 * 300.00450 * 4 2 1 26 26 H 1.09002 * 109.47153 * 59.99783 * 7 5 2 27 27 H 1.09001 * 109.46832 * 299.99974 * 7 5 2 28 28 H 1.09004 * 109.47261 * 179.97438 * 7 5 2 29 29 H 1.08002 * 125.38467 * 359.97438 * 9 8 5 30 30 H 0.97005 * 119.99187 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 2.0399 -0.7214 -1.2491 6 1 3.1263 -0.7996 -1.2054 7 6 1.4299 -2.1230 -1.3134 8 6 1.6413 0.0569 -2.4766 9 6 0.4348 -0.0935 -3.0599 10 16 0.3325 0.9416 -4.4177 11 6 1.9638 1.5279 -4.1086 12 6 2.6422 2.4855 -4.8705 13 1 3.6448 2.7808 -4.5986 14 6 2.0200 3.0620 -5.9876 15 7 0.8069 2.7044 -6.3170 16 14 2.9260 4.3400 -7.0052 17 1 3.6848 3.6636 -8.0877 18 1 1.9461 5.2827 -7.6021 19 1 3.8670 5.0895 -6.1348 20 7 2.4396 0.9223 -3.0382 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 3.0261 -0.7625 1.1910 25 1 1.6960 -0.2348 2.0386 26 1 0.3435 -2.0448 -1.3571 27 1 1.7182 -2.6858 -0.4256 28 1 1.7929 -2.6368 -2.2036 29 1 -0.3438 -0.7619 -2.7230 30 1 0.3766 3.1034 -7.0893 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165381692.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:56 Heat of formation + Delta-G solvation = 5.009219 kcal Electronic energy + Delta-G solvation = -13573.134100 eV Core-core repulsion = 11300.587453 eV Total energy + Delta-G solvation = -2272.546647 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.47449 -35.97440 -34.02268 -31.30135 -28.43711 -28.04131 -26.09787 -24.62207 -21.93048 -19.64539 -17.69136 -17.42474 -15.77761 -15.31758 -15.12676 -14.96378 -14.14018 -13.63598 -12.86384 -12.39801 -12.16924 -12.05085 -11.77965 -11.52511 -11.39949 -11.17518 -10.97371 -10.55541 -10.49705 -10.35470 -10.01385 -9.57748 -9.25318 -8.37642 -7.79318 -7.69978 -7.06204 -7.04969 -4.70310 2.55923 2.93433 2.99063 3.05343 3.59252 3.70154 4.10257 4.13879 4.87049 5.13440 5.42284 5.55603 5.76713 5.94236 6.09142 6.18787 6.32892 6.42436 6.60603 6.69366 6.76512 6.81917 6.84401 6.89003 7.36220 7.45295 7.65098 7.73457 7.93030 8.34440 8.47874 9.79667 9.87633 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.050236 B = 0.007440 C = 0.007004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.234132 B = 3762.564335 C = 3996.913707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.100 3.900 3 H 0.033 0.967 4 N -0.846 5.846 5 C -0.007 4.007 6 H 0.066 0.934 7 C -0.129 4.129 8 C 0.116 3.884 9 C -0.455 4.455 10 S 0.093 5.907 11 C 0.206 3.794 12 C -0.378 4.378 13 H 0.101 0.899 14 C 0.055 3.945 15 N -0.780 5.780 16 Si 0.940 3.060 17 H -0.265 1.265 18 H -0.273 1.273 19 H -0.258 1.258 20 N -0.602 5.602 21 H 0.073 0.927 22 H 0.061 0.939 23 H 0.039 0.961 24 H 0.337 0.663 25 H 0.334 0.666 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.129 0.871 30 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.287 -1.293 4.514 4.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.011 4.011 3 H 0.052 0.948 4 N -0.375 5.375 5 C -0.028 4.028 6 H 0.084 0.916 7 C -0.186 4.186 8 C -0.024 4.024 9 C -0.598 4.598 10 S 0.352 5.648 11 C -0.047 4.047 12 C -0.420 4.420 13 H 0.119 0.881 14 C -0.167 4.167 15 N -0.409 5.409 16 Si 0.763 3.237 17 H -0.190 1.190 18 H -0.198 1.198 19 H -0.181 1.181 20 N -0.324 5.324 21 H 0.092 0.908 22 H 0.080 0.920 23 H 0.058 0.942 24 H 0.149 0.851 25 H 0.145 0.855 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.147 0.853 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.196 -1.547 3.486 3.996 hybrid contribution 0.944 0.881 0.532 1.397 sum -0.252 -0.665 4.018 4.080 Atomic orbital electron populations 1.21931 0.94765 1.02126 1.01542 1.21209 0.95604 0.94872 0.89421 0.94848 1.58809 1.15795 1.58760 1.04184 1.19508 0.99257 0.93709 0.90346 0.91559 1.21726 1.00825 0.95588 1.00494 1.19501 0.90423 0.96005 0.96485 1.25728 1.03979 1.18456 1.11679 1.84174 1.19915 1.35513 1.25246 1.23916 0.92042 0.96086 0.92648 1.18975 1.01687 1.15292 1.06053 0.88106 1.26166 0.94923 0.97961 0.97657 1.68841 1.11989 1.36179 1.23857 0.85744 0.79570 0.79039 0.79316 1.18957 1.19759 1.18122 1.67252 1.34712 1.17031 1.13442 0.90800 0.92048 0.94206 0.85134 0.85474 0.92634 0.92399 0.93721 0.85266 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 8.53 37.16 0.32 -2.16 16 2 C 0.10 1.76 3.13 -67.71 -0.21 1.55 16 3 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 4 N -0.85 -11.86 8.70 -4.67 -0.04 -11.90 16 5 C -0.01 -0.13 2.73 -91.77 -0.25 -0.38 16 6 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 7 C -0.13 -2.28 8.08 37.16 0.30 -1.98 16 8 C 0.12 2.83 5.38 -84.38 -0.45 2.38 16 9 C -0.45 -10.97 8.14 29.53 0.24 -10.73 16 10 S 0.09 2.40 20.18 -107.50 -2.17 0.23 16 11 C 0.21 5.70 7.14 -16.91 -0.12 5.58 16 12 C -0.38 -9.92 9.45 -38.20 -0.36 -10.28 16 13 H 0.10 2.56 7.85 -52.49 -0.41 2.15 16 14 C 0.06 1.31 5.50 -17.28 -0.10 1.22 16 15 N -0.78 -18.92 10.67 55.56 0.59 -18.33 16 16 Si 0.94 17.63 29.56 -169.99 -5.03 12.60 16 17 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 18 H -0.27 -4.94 7.11 56.52 0.40 -4.53 16 19 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 20 N -0.60 -16.42 10.68 -9.33 -0.10 -16.52 16 21 H 0.07 1.43 6.01 -51.93 -0.31 1.12 16 22 H 0.06 1.00 6.35 -51.93 -0.33 0.67 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.34 4.36 8.99 -39.29 -0.35 4.01 16 25 H 0.33 4.01 9.04 -39.29 -0.36 3.65 16 26 H 0.05 0.97 5.06 -51.93 -0.26 0.71 16 27 H 0.06 0.93 7.75 -51.93 -0.40 0.52 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.13 2.88 6.73 -52.49 -0.35 2.53 16 30 H 0.30 6.44 8.29 -40.82 -0.34 6.10 16 LS Contribution 257.85 15.07 3.89 3.89 Total: -1.00 -27.97 257.85 -7.10 -35.07 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -3.61 Total: 9.76 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -0.64 Total: -14.80 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.45 Total: -46.75 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -2.17 Total: 0.23 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -27.97 -7.10 -35.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165381692.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.082 kcal (2) G-P(sol) polarization free energy of solvation -27.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds