Wall clock time and date at job start Mon Mar 30 2020 02:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47242 * 2 1 4 4 C 1.50703 * 109.47238 * 119.99816 * 2 1 3 5 5 C 1.34858 * 122.09752 * 34.99906 * 4 2 1 6 6 S 1.71039 * 109.23099 * 179.97438 * 5 4 2 7 7 C 1.76079 * 90.39389 * 0.02562 * 6 5 4 8 8 C 1.39908 * 125.55835 * 180.02562 * 7 6 5 9 9 H 1.07997 * 119.99981 * 179.97438 * 8 7 6 10 10 C 1.40244 * 119.99976 * 359.97438 * 8 7 6 11 11 N 1.30706 * 120.00167 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00204 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.46995 * 59.99942 * 12 10 8 14 14 H 1.48502 * 109.47388 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47200 * 299.99903 * 12 10 8 16 16 N 1.30450 * 122.10381 * 214.71259 * 4 2 1 17 17 C 1.53001 * 109.47281 * 239.99923 * 2 1 3 18 18 H 1.08996 * 109.47310 * 185.00244 * 17 2 1 19 19 C 1.53001 * 109.47190 * 64.99805 * 17 2 1 20 20 N 1.46905 * 109.47027 * 305.00036 * 17 2 1 21 21 H 1.08998 * 109.46982 * 60.00154 * 1 2 3 22 22 H 1.08995 * 109.46803 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46922 * 300.00216 * 1 2 3 24 24 H 1.07998 * 125.38769 * 0.02562 * 5 4 2 25 25 H 0.96990 * 119.99994 * 179.97438 * 11 10 8 26 26 H 1.08996 * 109.47352 * 300.00412 * 19 17 2 27 27 H 1.09012 * 109.46801 * 60.00186 * 19 17 2 28 28 H 1.08998 * 109.47171 * 179.97438 * 19 17 2 29 29 H 1.00901 * 110.99869 * 296.04819 * 20 17 2 30 30 H 1.00896 * 110.99543 * 59.99942 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.3890 -1.7716 1.7582 6 16 2.2393 -2.3169 3.1384 7 6 3.4401 -1.0486 2.9146 8 6 4.5557 -0.8313 3.7304 9 1 5.2374 -0.0234 3.5091 10 6 4.7889 -1.6626 4.8355 11 7 3.9636 -2.6401 5.1037 12 14 6.2788 -1.3731 5.9244 13 1 6.2068 -0.0102 6.5095 14 1 6.2979 -2.3804 7.0154 15 1 7.5164 -1.4989 5.1135 16 7 3.1199 -0.3408 1.8489 17 6 2.0401 -0.7213 -1.2492 18 1 3.1263 -0.7995 -1.2056 19 6 1.6353 0.0689 -2.4953 20 7 1.4543 -2.0671 -1.3111 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 0.4808 -2.2087 1.3701 25 1 4.1250 -3.2153 5.8678 26 1 0.5490 0.1471 -2.5390 27 1 2.0700 1.0675 -2.4494 28 1 1.9990 -0.4447 -3.3853 29 1 1.7592 -2.6303 -0.5314 30 1 0.4472 -2.0214 -1.3523 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165381935.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:01 Heat of formation + Delta-G solvation = 2.106241 kcal Electronic energy + Delta-G solvation = -13595.101134 eV Core-core repulsion = 11322.428605 eV Total energy + Delta-G solvation = -2272.672529 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.61054 -36.07516 -34.03859 -30.74582 -28.99532 -28.08237 -26.03811 -24.77732 -21.93124 -19.65037 -17.80003 -17.53694 -15.79248 -15.61575 -15.20390 -14.44143 -13.91294 -13.75956 -13.28576 -12.52486 -12.18387 -12.12733 -11.82911 -11.61541 -11.43674 -11.35146 -10.90901 -10.75819 -10.59396 -10.41886 -10.19399 -9.63172 -9.28868 -8.24991 -7.86672 -7.73956 -7.09312 -7.08729 -4.75420 2.52103 2.91528 2.95775 3.03390 3.54646 3.67438 4.06420 4.10039 5.01339 5.12815 5.34478 5.51522 5.58553 5.75803 5.89185 5.98611 6.18188 6.24917 6.44371 6.46590 6.60188 6.69428 6.72053 6.80464 7.26725 7.59356 7.67752 7.88548 7.95460 8.30050 8.42623 9.75210 9.82925 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.051084 B = 0.007450 C = 0.007011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.988619 B = 3757.727959 C = 3992.588228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.052 4.052 3 H 0.073 0.927 4 C 0.119 3.881 5 C -0.468 4.468 6 S 0.096 5.904 7 C 0.206 3.794 8 C -0.375 4.375 9 H 0.102 0.898 10 C 0.055 3.945 11 N -0.778 5.778 12 Si 0.942 3.058 13 H -0.260 1.260 14 H -0.274 1.274 15 H -0.260 1.260 16 N -0.601 5.601 17 C 0.099 3.901 18 H 0.078 0.922 19 C -0.142 4.142 20 N -0.844 5.844 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.126 0.874 25 H 0.298 0.702 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.349 0.651 30 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.401 0.995 -3.576 4.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.075 4.075 3 H 0.092 0.908 4 C -0.022 4.022 5 C -0.612 4.612 6 S 0.355 5.645 7 C -0.046 4.046 8 C -0.418 4.418 9 H 0.120 0.880 10 C -0.168 4.168 11 N -0.407 5.407 12 Si 0.765 3.235 13 H -0.185 1.185 14 H -0.198 1.198 15 H -0.184 1.184 16 N -0.323 5.323 17 C -0.014 4.014 18 H 0.096 0.904 19 C -0.199 4.199 20 N -0.375 5.375 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.144 0.856 25 H 0.111 0.889 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.164 0.836 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.882 0.297 -3.521 4.003 hybrid contribution -0.356 0.722 0.707 1.072 sum -2.238 1.019 -2.813 3.737 Atomic orbital electron populations 1.21816 0.95561 1.01366 1.00928 1.20377 0.94656 0.99591 0.92839 0.90821 1.19523 0.92256 0.94065 0.96358 1.25680 1.11619 1.11410 1.12503 1.84182 1.20285 1.36169 1.23857 1.23925 0.96361 0.91407 0.92929 1.18966 1.05298 1.12084 1.05422 0.88049 1.26183 0.98915 0.93580 0.98072 1.68823 1.33758 1.12674 1.25464 0.85769 0.79812 0.79454 0.78504 1.18458 1.19842 1.18425 1.67257 1.19185 1.33763 1.12052 1.21320 0.99416 0.88281 0.92338 0.90425 1.21834 1.01051 0.99382 0.97672 1.59146 1.13163 1.13542 1.51641 0.93006 0.92846 0.92818 0.85645 0.88881 0.92920 0.92580 0.92450 0.83589 0.85758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 7.97 37.16 0.30 -1.96 16 2 C -0.05 -0.99 2.62 -91.77 -0.24 -1.23 16 3 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 4 C 0.12 2.83 5.39 -84.38 -0.45 2.37 16 5 C -0.47 -10.98 8.49 29.53 0.25 -10.73 16 6 S 0.10 2.44 20.18 -107.50 -2.17 0.27 16 7 C 0.21 5.65 7.14 -16.91 -0.12 5.53 16 8 C -0.38 -9.78 9.45 -38.20 -0.36 -10.14 16 9 H 0.10 2.55 7.85 -52.49 -0.41 2.14 16 10 C 0.06 1.30 5.50 -17.28 -0.10 1.20 16 11 N -0.78 -18.72 10.67 55.56 0.59 -18.13 16 12 Si 0.94 17.50 29.56 -169.99 -5.03 12.48 16 13 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 14 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 15 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 16 N -0.60 -16.18 10.68 -9.33 -0.10 -16.28 16 17 C 0.10 1.72 3.17 -67.71 -0.21 1.51 16 18 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 19 C -0.14 -1.98 9.24 37.16 0.34 -1.64 16 20 N -0.84 -14.25 8.97 -4.66 -0.04 -14.29 16 21 H 0.05 0.71 6.56 -51.93 -0.34 0.37 16 22 H 0.05 0.84 5.33 -51.93 -0.28 0.57 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.13 2.69 6.89 -52.49 -0.36 2.33 16 25 H 0.30 6.43 8.29 -40.82 -0.34 6.09 16 26 H 0.05 0.67 6.56 -51.93 -0.34 0.33 16 27 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.35 6.60 7.13 -39.29 -0.28 6.32 16 30 H 0.33 5.00 7.03 -39.29 -0.28 4.73 16 LS Contribution 256.71 15.07 3.87 3.87 Total: -1.00 -27.25 256.71 -7.01 -34.26 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -3.54 Total: 12.92 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -0.60 Total: -15.09 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: 0.45 Total: -48.71 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.48 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -2.17 Total: 0.27 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -27.25 -7.01 -34.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165381935.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.363 kcal (2) G-P(sol) polarization free energy of solvation -27.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds