Wall clock time and date at job start Mon Mar 30 2020 02:55:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08999 * 109.47242 * 2 1
4 4 C 1.50703 * 109.47238 * 119.99816 * 2 1 3
5 5 C 1.34858 * 122.09752 * 34.99906 * 4 2 1
6 6 S 1.71039 * 109.23099 * 179.97438 * 5 4 2
7 7 C 1.76079 * 90.39389 * 0.02562 * 6 5 4
8 8 C 1.39908 * 125.55835 * 180.02562 * 7 6 5
9 9 H 1.07997 * 119.99981 * 179.97438 * 8 7 6
10 10 C 1.40244 * 119.99976 * 359.97438 * 8 7 6
11 11 N 1.30706 * 120.00167 * 359.97438 * 10 8 7
12 12 Si 1.86796 * 120.00204 * 179.97438 * 10 8 7
13 13 H 1.48494 * 109.46995 * 59.99942 * 12 10 8
14 14 H 1.48502 * 109.47388 * 180.02562 * 12 10 8
15 15 H 1.48499 * 109.47200 * 299.99903 * 12 10 8
16 16 N 1.30450 * 122.10381 * 214.71259 * 4 2 1
17 17 C 1.53001 * 109.47281 * 239.99923 * 2 1 3
18 18 H 1.08996 * 109.47310 * 185.00244 * 17 2 1
19 19 C 1.53001 * 109.47190 * 64.99805 * 17 2 1
20 20 N 1.46905 * 109.47027 * 305.00036 * 17 2 1
21 21 H 1.08998 * 109.46982 * 60.00154 * 1 2 3
22 22 H 1.08995 * 109.46803 * 179.97438 * 1 2 3
23 23 H 1.08993 * 109.46922 * 300.00216 * 1 2 3
24 24 H 1.07998 * 125.38769 * 0.02562 * 5 4 2
25 25 H 0.96990 * 119.99994 * 179.97438 * 11 10 8
26 26 H 1.08996 * 109.47352 * 300.00412 * 19 17 2
27 27 H 1.09012 * 109.46801 * 60.00186 * 19 17 2
28 28 H 1.08998 * 109.47171 * 179.97438 * 19 17 2
29 29 H 1.00901 * 110.99869 * 296.04819 * 20 17 2
30 30 H 1.00896 * 110.99543 * 59.99942 * 20 17 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0324 -0.7104 1.2305
5 6 1.3890 -1.7716 1.7582
6 16 2.2393 -2.3169 3.1384
7 6 3.4401 -1.0486 2.9146
8 6 4.5557 -0.8313 3.7304
9 1 5.2374 -0.0234 3.5091
10 6 4.7889 -1.6626 4.8355
11 7 3.9636 -2.6401 5.1037
12 14 6.2788 -1.3731 5.9244
13 1 6.2068 -0.0102 6.5095
14 1 6.2979 -2.3804 7.0154
15 1 7.5164 -1.4989 5.1135
16 7 3.1199 -0.3408 1.8489
17 6 2.0401 -0.7213 -1.2492
18 1 3.1263 -0.7995 -1.2056
19 6 1.6353 0.0689 -2.4953
20 7 1.4543 -2.0671 -1.3111
21 1 -0.3633 0.5138 -0.8900
22 1 -0.3633 -1.0276 -0.0005
23 1 -0.3633 0.5138 0.8899
24 1 0.4808 -2.2087 1.3701
25 1 4.1250 -3.2153 5.8678
26 1 0.5490 0.1471 -2.5390
27 1 2.0700 1.0675 -2.4494
28 1 1.9990 -0.4447 -3.3853
29 1 1.7592 -2.6303 -0.5314
30 1 0.4472 -2.0214 -1.3523
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000165381935.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:55:00
Heat of formation + Delta-G solvation = -16.521190 kcal
Electronic energy + Delta-G solvation = -13595.908880 eV
Core-core repulsion = 11322.428605 eV
Total energy + Delta-G solvation = -2273.480275 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 226.083 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-40.32139 -37.71470 -35.87638 -32.30188 -30.55742 -29.58462 -27.86791 -26.28797
-23.67531 -21.21239 -19.69269 -19.28750 -17.65090 -17.04762 -16.88773 -15.91096
-15.50059 -15.23879 -14.79226 -14.33482 -14.01925 -13.72387 -13.15696 -13.05889
-12.90297 -12.67658 -12.45181 -12.39000 -12.04789 -12.00387 -11.65246 -11.33789
-11.09941 -9.83844 -9.74465 -9.66151 -9.01866 -8.89390 -6.71179 0.66200
1.38110 1.50834 1.54188 1.57087 2.06095 2.21345 2.30290 3.15407
3.71850 3.85019 4.09110 4.18510 4.48799 4.51903 4.71046 4.80587
4.91513 4.95020 4.96122 5.11314 5.14782 5.20991 5.41076 5.49054
5.76474 5.93719 6.23956 6.39641 6.49528 6.61430 7.85901 8.01285
Molecular weight = 226.08amu
Principal moments of inertia in cm(-1)
A = 0.051084 B = 0.007450 C = 0.007011
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 547.988619 B = 3757.727959 C = 3992.588228
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.051 4.051
3 H 0.063 0.937
4 C 0.108 3.892
5 C -0.467 4.467
6 S 0.076 5.924
7 C 0.172 3.828
8 C -0.405 4.405
9 H 0.099 0.901
10 C 0.020 3.980
11 N -0.797 5.797
12 Si 1.017 2.983
13 H -0.256 1.256
14 H -0.256 1.256
15 H -0.256 1.256
16 N -0.635 5.635
17 C 0.104 3.896
18 H 0.045 0.955
19 C -0.133 4.133
20 N -0.839 5.839
21 H 0.085 0.915
22 H 0.058 0.942
23 H 0.042 0.958
24 H 0.146 0.854
25 H 0.311 0.689
26 H 0.072 0.928
27 H 0.063 0.937
28 H 0.064 0.936
29 H 0.337 0.663
30 H 0.343 0.657
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.620 1.075 -3.765 4.712
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.074 4.074
3 H 0.081 0.919
4 C -0.031 4.031
5 C -0.610 4.610
6 S 0.334 5.666
7 C -0.079 4.079
8 C -0.447 4.447
9 H 0.117 0.883
10 C -0.200 4.200
11 N -0.425 5.425
12 Si 0.835 3.165
13 H -0.180 1.180
14 H -0.180 1.180
15 H -0.180 1.180
16 N -0.358 5.358
17 C -0.009 4.009
18 H 0.063 0.937
19 C -0.191 4.191
20 N -0.369 5.369
21 H 0.103 0.897
22 H 0.077 0.923
23 H 0.061 0.939
24 H 0.164 0.836
25 H 0.124 0.876
26 H 0.090 0.910
27 H 0.082 0.918
28 H 0.083 0.917
29 H 0.150 0.850
30 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges -2.149 0.371 -3.741 4.331
hybrid contribution -0.299 0.670 0.768 1.062
sum -2.448 1.040 -2.973 3.989
Atomic orbital electron populations
1.21767 0.92956 1.02065 1.02060 1.20507 0.96708 0.98541 0.91600
0.91857 1.20171 0.91311 0.94272 0.97352 1.25787 1.12085 1.11394
1.11734 1.83999 1.20727 1.36424 1.25475 1.24395 0.97488 0.92331
0.93716 1.19337 1.05452 1.13123 1.06813 0.88310 1.27193 1.01832
0.92531 0.98446 1.68859 1.34919 1.12771 1.25966 0.84688 0.75420
0.79815 0.76601 1.17996 1.17967 1.18032 1.67326 1.20881 1.34827
1.12767 1.21259 0.97612 0.88812 0.93219 0.93659 1.21772 1.02360
0.99166 0.95758 1.59139 1.14101 1.12936 1.50733 0.89655 0.92297
0.93929 0.83644 0.87569 0.90960 0.91769 0.91691 0.85039 0.84323
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.96 7.97 71.98 0.57 -3.39 16
2 C -0.05 -1.90 2.62 -11.54 -0.03 -1.93 16
3 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16
4 C 0.11 5.22 5.39 41.99 0.23 5.45 16
5 C -0.47 -21.99 8.49 67.04 0.57 -21.42 16
6 S 0.08 3.92 20.18 -56.49 -1.14 2.78 16
7 C 0.17 9.72 7.14 85.09 0.61 10.33 16
8 C -0.40 -21.60 9.45 23.16 0.22 -21.38 16
9 H 0.10 5.13 7.85 -2.91 -0.02 5.10 16
10 C 0.02 0.96 5.50 85.35 0.47 1.43 16
11 N -0.80 -38.24 10.67 21.88 0.23 -38.01 16
12 Si 1.02 34.90 29.56 68.60 2.03 36.93 16
13 H -0.26 -8.58 7.11 99.48 0.71 -7.87 16
14 H -0.26 -8.01 7.11 99.48 0.71 -7.30 16
15 H -0.26 -8.62 7.11 99.48 0.71 -7.91 16
16 N -0.63 -35.24 10.68 -183.44 -1.96 -37.20 16
17 C 0.10 3.52 3.17 44.91 0.14 3.66 16
18 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16
19 C -0.13 -3.38 9.24 71.98 0.67 -2.71 16
20 N -0.84 -27.20 8.97 -168.67 -1.51 -28.71 16
21 H 0.08 2.02 6.56 -2.39 -0.02 2.00 16
22 H 0.06 1.71 5.33 -2.39 -0.01 1.70 16
23 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16
24 H 0.15 6.11 6.89 -2.91 -0.02 6.09 16
25 H 0.31 13.12 8.29 -92.72 -0.77 12.35 16
26 H 0.07 1.56 6.56 -2.39 -0.02 1.55 16
27 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16
28 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16
29 H 0.34 12.58 7.13 -89.69 -0.64 11.94 16
30 H 0.34 9.55 7.03 -89.70 -0.63 8.92 16
Total: -1.00 -59.91 256.71 0.99 -58.92
By element:
Atomic # 1 Polarization: 35.37 SS G_CDS: -0.10 Total: 35.27 kcal
Atomic # 6 Polarization: -33.42 SS G_CDS: 3.44 Total: -29.97 kcal
Atomic # 7 Polarization: -100.68 SS G_CDS: -3.24 Total: -103.92 kcal
Atomic # 14 Polarization: 34.90 SS G_CDS: 2.03 Total: 36.93 kcal
Atomic # 16 Polarization: 3.92 SS G_CDS: -1.14 Total: 2.78 kcal
Total: -59.91 0.99 -58.92 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000165381935.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.398 kcal
(2) G-P(sol) polarization free energy of solvation -59.909 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.511 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.990 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.919 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.521 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds