Wall clock time and date at job start Mon Mar 30 2020 02:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47242 * 2 1 4 4 C 1.50703 * 109.47238 * 119.99816 * 2 1 3 5 5 C 1.34858 * 122.09752 * 34.99906 * 4 2 1 6 6 S 1.71039 * 109.23099 * 179.97438 * 5 4 2 7 7 C 1.76079 * 90.39389 * 0.02562 * 6 5 4 8 8 C 1.39908 * 125.55835 * 180.02562 * 7 6 5 9 9 H 1.07997 * 119.99981 * 179.97438 * 8 7 6 10 10 C 1.40244 * 119.99976 * 359.97438 * 8 7 6 11 11 N 1.30706 * 120.00167 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00204 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.46995 * 59.99942 * 12 10 8 14 14 H 1.48502 * 109.47388 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47200 * 299.99903 * 12 10 8 16 16 N 1.30450 * 122.10381 * 214.71259 * 4 2 1 17 17 C 1.53001 * 109.47281 * 239.99923 * 2 1 3 18 18 H 1.08996 * 109.47310 * 185.00244 * 17 2 1 19 19 C 1.53001 * 109.47190 * 64.99805 * 17 2 1 20 20 N 1.46905 * 109.47027 * 305.00036 * 17 2 1 21 21 H 1.08998 * 109.46982 * 60.00154 * 1 2 3 22 22 H 1.08995 * 109.46803 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46922 * 300.00216 * 1 2 3 24 24 H 1.07998 * 125.38769 * 0.02562 * 5 4 2 25 25 H 0.96990 * 119.99994 * 179.97438 * 11 10 8 26 26 H 1.08996 * 109.47352 * 300.00412 * 19 17 2 27 27 H 1.09012 * 109.46801 * 60.00186 * 19 17 2 28 28 H 1.08998 * 109.47171 * 179.97438 * 19 17 2 29 29 H 1.00901 * 110.99869 * 296.04819 * 20 17 2 30 30 H 1.00896 * 110.99543 * 59.99942 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.3890 -1.7716 1.7582 6 16 2.2393 -2.3169 3.1384 7 6 3.4401 -1.0486 2.9146 8 6 4.5557 -0.8313 3.7304 9 1 5.2374 -0.0234 3.5091 10 6 4.7889 -1.6626 4.8355 11 7 3.9636 -2.6401 5.1037 12 14 6.2788 -1.3731 5.9244 13 1 6.2068 -0.0102 6.5095 14 1 6.2979 -2.3804 7.0154 15 1 7.5164 -1.4989 5.1135 16 7 3.1199 -0.3408 1.8489 17 6 2.0401 -0.7213 -1.2492 18 1 3.1263 -0.7995 -1.2056 19 6 1.6353 0.0689 -2.4953 20 7 1.4543 -2.0671 -1.3111 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 0.4808 -2.2087 1.3701 25 1 4.1250 -3.2153 5.8678 26 1 0.5490 0.1471 -2.5390 27 1 2.0700 1.0675 -2.4494 28 1 1.9990 -0.4447 -3.3853 29 1 1.7592 -2.6303 -0.5314 30 1 0.4472 -2.0214 -1.3523 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165381935.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:00 Heat of formation + Delta-G solvation = -16.521190 kcal Electronic energy + Delta-G solvation = -13595.908880 eV Core-core repulsion = 11322.428605 eV Total energy + Delta-G solvation = -2273.480275 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.32139 -37.71470 -35.87638 -32.30188 -30.55742 -29.58462 -27.86791 -26.28797 -23.67531 -21.21239 -19.69269 -19.28750 -17.65090 -17.04762 -16.88773 -15.91096 -15.50059 -15.23879 -14.79226 -14.33482 -14.01925 -13.72387 -13.15696 -13.05889 -12.90297 -12.67658 -12.45181 -12.39000 -12.04789 -12.00387 -11.65246 -11.33789 -11.09941 -9.83844 -9.74465 -9.66151 -9.01866 -8.89390 -6.71179 0.66200 1.38110 1.50834 1.54188 1.57087 2.06095 2.21345 2.30290 3.15407 3.71850 3.85019 4.09110 4.18510 4.48799 4.51903 4.71046 4.80587 4.91513 4.95020 4.96122 5.11314 5.14782 5.20991 5.41076 5.49054 5.76474 5.93719 6.23956 6.39641 6.49528 6.61430 7.85901 8.01285 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.051084 B = 0.007450 C = 0.007011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.988619 B = 3757.727959 C = 3992.588228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.051 4.051 3 H 0.063 0.937 4 C 0.108 3.892 5 C -0.467 4.467 6 S 0.076 5.924 7 C 0.172 3.828 8 C -0.405 4.405 9 H 0.099 0.901 10 C 0.020 3.980 11 N -0.797 5.797 12 Si 1.017 2.983 13 H -0.256 1.256 14 H -0.256 1.256 15 H -0.256 1.256 16 N -0.635 5.635 17 C 0.104 3.896 18 H 0.045 0.955 19 C -0.133 4.133 20 N -0.839 5.839 21 H 0.085 0.915 22 H 0.058 0.942 23 H 0.042 0.958 24 H 0.146 0.854 25 H 0.311 0.689 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.337 0.663 30 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.620 1.075 -3.765 4.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.074 4.074 3 H 0.081 0.919 4 C -0.031 4.031 5 C -0.610 4.610 6 S 0.334 5.666 7 C -0.079 4.079 8 C -0.447 4.447 9 H 0.117 0.883 10 C -0.200 4.200 11 N -0.425 5.425 12 Si 0.835 3.165 13 H -0.180 1.180 14 H -0.180 1.180 15 H -0.180 1.180 16 N -0.358 5.358 17 C -0.009 4.009 18 H 0.063 0.937 19 C -0.191 4.191 20 N -0.369 5.369 21 H 0.103 0.897 22 H 0.077 0.923 23 H 0.061 0.939 24 H 0.164 0.836 25 H 0.124 0.876 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.150 0.850 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.149 0.371 -3.741 4.331 hybrid contribution -0.299 0.670 0.768 1.062 sum -2.448 1.040 -2.973 3.989 Atomic orbital electron populations 1.21767 0.92956 1.02065 1.02060 1.20507 0.96708 0.98541 0.91600 0.91857 1.20171 0.91311 0.94272 0.97352 1.25787 1.12085 1.11394 1.11734 1.83999 1.20727 1.36424 1.25475 1.24395 0.97488 0.92331 0.93716 1.19337 1.05452 1.13123 1.06813 0.88310 1.27193 1.01832 0.92531 0.98446 1.68859 1.34919 1.12771 1.25966 0.84688 0.75420 0.79815 0.76601 1.17996 1.17967 1.18032 1.67326 1.20881 1.34827 1.12767 1.21259 0.97612 0.88812 0.93219 0.93659 1.21772 1.02360 0.99166 0.95758 1.59139 1.14101 1.12936 1.50733 0.89655 0.92297 0.93929 0.83644 0.87569 0.90960 0.91769 0.91691 0.85039 0.84323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.96 7.97 71.98 0.57 -3.39 16 2 C -0.05 -1.90 2.62 -11.54 -0.03 -1.93 16 3 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 4 C 0.11 5.22 5.39 41.99 0.23 5.45 16 5 C -0.47 -21.99 8.49 67.04 0.57 -21.42 16 6 S 0.08 3.92 20.18 -56.49 -1.14 2.78 16 7 C 0.17 9.72 7.14 85.09 0.61 10.33 16 8 C -0.40 -21.60 9.45 23.16 0.22 -21.38 16 9 H 0.10 5.13 7.85 -2.91 -0.02 5.10 16 10 C 0.02 0.96 5.50 85.35 0.47 1.43 16 11 N -0.80 -38.24 10.67 21.88 0.23 -38.01 16 12 Si 1.02 34.90 29.56 68.60 2.03 36.93 16 13 H -0.26 -8.58 7.11 99.48 0.71 -7.87 16 14 H -0.26 -8.01 7.11 99.48 0.71 -7.30 16 15 H -0.26 -8.62 7.11 99.48 0.71 -7.91 16 16 N -0.63 -35.24 10.68 -183.44 -1.96 -37.20 16 17 C 0.10 3.52 3.17 44.91 0.14 3.66 16 18 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 19 C -0.13 -3.38 9.24 71.98 0.67 -2.71 16 20 N -0.84 -27.20 8.97 -168.67 -1.51 -28.71 16 21 H 0.08 2.02 6.56 -2.39 -0.02 2.00 16 22 H 0.06 1.71 5.33 -2.39 -0.01 1.70 16 23 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.15 6.11 6.89 -2.91 -0.02 6.09 16 25 H 0.31 13.12 8.29 -92.72 -0.77 12.35 16 26 H 0.07 1.56 6.56 -2.39 -0.02 1.55 16 27 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 28 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.34 12.58 7.13 -89.69 -0.64 11.94 16 30 H 0.34 9.55 7.03 -89.70 -0.63 8.92 16 Total: -1.00 -59.91 256.71 0.99 -58.92 By element: Atomic # 1 Polarization: 35.37 SS G_CDS: -0.10 Total: 35.27 kcal Atomic # 6 Polarization: -33.42 SS G_CDS: 3.44 Total: -29.97 kcal Atomic # 7 Polarization: -100.68 SS G_CDS: -3.24 Total: -103.92 kcal Atomic # 14 Polarization: 34.90 SS G_CDS: 2.03 Total: 36.93 kcal Atomic # 16 Polarization: 3.92 SS G_CDS: -1.14 Total: 2.78 kcal Total: -59.91 0.99 -58.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165381935.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.398 kcal (2) G-P(sol) polarization free energy of solvation -59.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds