Wall clock time and date at job start Mon Mar 30 2020 03:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86803 * 120.00040 * 2 1 4 4 H 1.48498 * 109.47035 * 274.99016 * 3 2 1 5 5 H 1.48502 * 109.46923 * 34.98732 * 3 2 1 6 6 H 1.48497 * 109.47188 * 154.98794 * 3 2 1 7 7 C 1.40138 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99971 * 186.15216 * 7 2 1 9 9 C 1.46217 * 119.99913 * 6.13784 * 7 2 1 10 10 O 1.21657 * 120.00414 * 353.94509 * 9 7 2 11 11 N 1.34781 * 120.00067 * 173.93660 * 9 7 2 12 12 C 1.34775 * 120.00399 * 180.02562 * 11 9 7 13 13 O 1.21253 * 119.99644 * 0.02562 * 12 11 9 14 14 C 1.50691 * 120.00206 * 180.02562 * 12 11 9 15 15 C 1.53122 * 109.52330 * 180.02562 * 14 12 11 16 16 C 1.53035 * 109.27880 * 177.56175 * 15 14 12 17 17 N 1.46847 * 109.52051 * 300.81381 * 16 15 14 18 18 C 1.46849 * 111.19744 * 61.74606 * 17 16 15 19 19 C 1.53034 * 109.52318 * 298.25613 * 18 17 16 20 20 H 0.96991 * 119.99818 * 359.97438 * 1 2 3 21 21 H 0.97007 * 119.99698 * 0.02562 * 11 9 7 22 22 H 1.08993 * 109.57975 * 59.84430 * 14 12 11 23 23 H 1.08994 * 109.50451 * 57.61560 * 15 14 12 24 24 H 1.09010 * 109.49819 * 297.49527 * 15 14 12 25 25 H 1.09004 * 109.46195 * 180.80448 * 16 15 14 26 26 H 1.08990 * 109.46711 * 60.83000 * 16 15 14 27 27 H 1.00900 * 111.00315 * 185.84147 * 17 16 15 28 28 H 1.08993 * 109.46175 * 58.27173 * 18 17 16 29 29 H 1.08998 * 109.46194 * 178.24156 * 18 17 16 30 30 H 1.09000 * 109.50532 * 299.23973 * 19 18 17 31 31 H 1.08994 * 109.50562 * 179.11966 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.3824 2.1073 -1.3948 5 1 1.4945 2.6199 0.8028 6 1 3.5866 1.4121 0.5919 7 6 2.0071 -1.2136 -0.0005 8 1 3.0824 -1.2163 0.0997 9 6 1.2823 -2.4762 -0.1365 10 8 0.0657 -2.4822 -0.1384 11 7 1.9620 -3.6335 -0.2600 12 6 1.2940 -4.7973 -0.3858 13 8 0.0815 -4.8031 -0.3884 14 6 2.0540 -6.0913 -0.5232 15 6 1.0658 -7.2541 -0.6502 16 6 1.8424 -8.5575 -0.8504 17 7 2.6657 -8.4569 -2.0622 18 6 3.6541 -7.3772 -1.9445 19 6 2.9316 -6.0386 -1.7769 20 1 -0.4849 0.8400 0.0004 21 1 2.9321 -3.6288 -0.2582 22 1 2.6822 -6.2409 0.3548 23 1 0.4124 -7.0846 -1.5059 24 1 0.4668 -7.3233 0.2580 25 1 1.1413 -9.3855 -0.9554 26 1 2.4854 -8.7333 0.0119 27 1 3.1143 -9.3368 -2.2687 28 1 4.2885 -7.5586 -1.0771 29 1 4.2688 -7.3480 -2.8442 30 1 2.3075 -5.8500 -2.6504 31 1 3.6655 -5.2394 -1.6739 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216696184.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:04 Heat of formation + Delta-G solvation = -86.756043 kcal Electronic energy + Delta-G solvation = -15685.624934 eV Core-core repulsion = 12966.346176 eV Total energy + Delta-G solvation = -2719.278758 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.87547 -37.95557 -35.98738 -33.15687 -32.58018 -31.78722 -30.72683 -26.78489 -24.82047 -22.93789 -21.60805 -19.72828 -18.90201 -17.82346 -16.64707 -15.86864 -15.48913 -14.66502 -14.63971 -14.35990 -13.98423 -13.36712 -13.18313 -13.01956 -12.50885 -12.22261 -11.70492 -11.37879 -11.25330 -11.11129 -11.05113 -10.66670 -10.53968 -10.40078 -10.31785 -9.25970 -9.01166 -8.55738 -8.40352 -7.54255 -6.31356 -4.82273 3.04997 3.14484 3.18531 3.25036 3.94043 4.12760 4.24948 4.51754 4.80838 4.88499 5.09358 5.22599 5.35651 5.51011 5.53948 5.61355 5.70394 5.76830 5.79314 6.00478 6.16409 6.30646 6.52353 6.92749 7.26774 7.29349 7.36157 7.90532 8.00660 8.63728 8.86903 9.37505 10.41549 10.59076 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.056934 B = 0.006125 C = 0.005656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.677463 B = 4570.402858 C = 4949.120121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.085 3.915 3 Si 0.914 3.086 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.541 4.541 8 H 0.074 0.926 9 C 0.527 3.473 10 O -0.519 6.519 11 N -0.691 5.691 12 C 0.501 3.499 13 O -0.494 6.494 14 C -0.112 4.112 15 C -0.098 4.098 16 C 0.059 3.941 17 N -0.692 5.692 18 C 0.061 3.939 19 C -0.109 4.109 20 H 0.273 0.727 21 H 0.392 0.608 22 H 0.088 0.912 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.029 0.971 27 H 0.340 0.660 28 H 0.031 0.969 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.225 -12.045 -1.912 15.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.137 4.137 3 Si 0.739 3.261 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.577 4.577 8 H 0.092 0.908 9 C 0.332 3.668 10 O -0.396 6.396 11 N -0.353 5.353 12 C 0.287 3.713 13 O -0.366 6.366 14 C -0.134 4.134 15 C -0.136 4.136 16 C -0.070 4.070 17 N -0.323 5.323 18 C -0.068 4.068 19 C -0.147 4.147 20 H 0.084 0.916 21 H 0.224 0.776 22 H 0.107 0.893 23 H 0.097 0.903 24 H 0.091 0.909 25 H 0.094 0.906 26 H 0.047 0.953 27 H 0.157 0.843 28 H 0.049 0.951 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.934 -11.537 -2.234 14.179 hybrid contribution 1.779 0.409 0.661 1.942 sum 9.713 -11.128 -1.573 14.854 Atomic orbital electron populations 1.70001 1.07258 1.27907 1.33466 1.25775 0.94681 1.00605 0.92608 0.86245 0.80121 0.80940 0.78843 1.19610 1.20275 1.18719 1.20920 0.94293 0.89161 1.53325 0.90809 1.18601 0.87760 0.82073 0.78345 1.90735 1.13339 1.85277 1.50266 1.45382 1.11233 1.08433 1.70220 1.20724 0.88508 0.85319 0.76782 1.90744 1.13746 1.86994 1.45141 1.21479 0.98072 0.94227 0.99642 1.21397 0.97067 0.91693 1.03475 1.21960 0.96210 0.98469 0.90356 1.60258 1.26036 1.08502 1.37499 1.21909 0.92984 0.91608 1.00338 1.21580 0.98693 0.96741 0.97730 0.91624 0.77613 0.89349 0.90257 0.90916 0.90629 0.95306 0.84269 0.95111 0.90560 0.90461 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.71 11.85 55.56 0.66 -22.06 16 2 C 0.08 2.32 5.50 -17.35 -0.10 2.23 16 3 Si 0.91 19.56 29.56 -169.99 -5.03 14.54 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.54 -14.91 9.53 -35.67 -0.34 -15.25 16 8 H 0.07 1.80 7.86 -52.49 -0.41 1.38 16 9 C 0.53 15.26 7.67 -13.05 -0.10 15.16 16 10 O -0.52 -17.72 13.44 -18.58 -0.25 -17.96 16 11 N -0.69 -15.58 5.14 -12.70 -0.07 -15.65 16 12 C 0.50 10.99 7.09 -10.99 -0.08 10.91 16 13 O -0.49 -13.50 14.38 -18.22 -0.26 -13.76 16 14 C -0.11 -1.72 2.59 -91.65 -0.24 -1.96 16 15 C -0.10 -1.44 4.68 -26.65 -0.12 -1.57 16 16 C 0.06 0.66 6.55 -3.83 -0.03 0.63 16 17 N -0.69 -7.37 6.85 -113.82 -0.78 -8.15 16 18 C 0.06 0.63 6.55 -3.83 -0.03 0.60 16 19 C -0.11 -1.42 5.26 -26.65 -0.14 -1.56 16 20 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 21 H 0.39 6.99 8.16 -40.82 -0.33 6.65 16 22 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 23 H 0.08 1.34 8.04 -51.93 -0.42 0.92 16 24 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 25 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.34 2.78 8.90 -39.29 -0.35 2.43 16 28 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.07 0.86 7.66 -51.93 -0.40 0.46 16 LS Contribution 263.87 15.07 3.98 3.98 Total: -1.00 -37.27 263.87 -6.92 -44.19 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -4.00 Total: 5.68 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: -1.17 Total: 9.19 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: -0.19 Total: -45.85 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -0.51 Total: -31.73 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.54 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -37.27 -6.92 -44.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216696184.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.567 kcal (2) G-P(sol) polarization free energy of solvation -37.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds