Wall clock time and date at job start Mon Mar 30 2020 03:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86803 * 120.00040 * 2 1 4 4 H 1.48498 * 109.47035 * 274.99016 * 3 2 1 5 5 H 1.48502 * 109.46923 * 34.98732 * 3 2 1 6 6 H 1.48497 * 109.47188 * 154.98794 * 3 2 1 7 7 C 1.40138 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99971 * 186.15216 * 7 2 1 9 9 C 1.46217 * 119.99913 * 6.13784 * 7 2 1 10 10 O 1.21657 * 120.00414 * 353.94509 * 9 7 2 11 11 N 1.34781 * 120.00067 * 173.93660 * 9 7 2 12 12 C 1.34775 * 120.00399 * 180.02562 * 11 9 7 13 13 O 1.21253 * 119.99644 * 0.02562 * 12 11 9 14 14 C 1.50691 * 120.00206 * 180.02562 * 12 11 9 15 15 C 1.53122 * 109.52330 * 180.02562 * 14 12 11 16 16 C 1.53035 * 109.27880 * 177.56175 * 15 14 12 17 17 N 1.46847 * 109.52051 * 300.81381 * 16 15 14 18 18 C 1.46849 * 111.19744 * 61.74606 * 17 16 15 19 19 C 1.53034 * 109.52318 * 298.25613 * 18 17 16 20 20 H 0.96991 * 119.99818 * 359.97438 * 1 2 3 21 21 H 0.97007 * 119.99698 * 0.02562 * 11 9 7 22 22 H 1.08993 * 109.57975 * 59.84430 * 14 12 11 23 23 H 1.08994 * 109.50451 * 57.61560 * 15 14 12 24 24 H 1.09010 * 109.49819 * 297.49527 * 15 14 12 25 25 H 1.09004 * 109.46195 * 180.80448 * 16 15 14 26 26 H 1.08990 * 109.46711 * 60.83000 * 16 15 14 27 27 H 1.00900 * 111.00315 * 185.84147 * 17 16 15 28 28 H 1.08993 * 109.46175 * 58.27173 * 18 17 16 29 29 H 1.08998 * 109.46194 * 178.24156 * 18 17 16 30 30 H 1.09000 * 109.50532 * 299.23973 * 19 18 17 31 31 H 1.08994 * 109.50562 * 179.11966 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.3824 2.1073 -1.3948 5 1 1.4945 2.6199 0.8028 6 1 3.5866 1.4121 0.5919 7 6 2.0071 -1.2136 -0.0005 8 1 3.0824 -1.2163 0.0997 9 6 1.2823 -2.4762 -0.1365 10 8 0.0657 -2.4822 -0.1384 11 7 1.9620 -3.6335 -0.2600 12 6 1.2940 -4.7973 -0.3858 13 8 0.0815 -4.8031 -0.3884 14 6 2.0540 -6.0913 -0.5232 15 6 1.0658 -7.2541 -0.6502 16 6 1.8424 -8.5575 -0.8504 17 7 2.6657 -8.4569 -2.0622 18 6 3.6541 -7.3772 -1.9445 19 6 2.9316 -6.0386 -1.7769 20 1 -0.4849 0.8400 0.0004 21 1 2.9321 -3.6288 -0.2582 22 1 2.6822 -6.2409 0.3548 23 1 0.4124 -7.0846 -1.5059 24 1 0.4668 -7.3233 0.2580 25 1 1.1413 -9.3855 -0.9554 26 1 2.4854 -8.7333 0.0119 27 1 3.1143 -9.3368 -2.2687 28 1 4.2885 -7.5586 -1.0771 29 1 4.2688 -7.3480 -2.8442 30 1 2.3075 -5.8500 -2.6504 31 1 3.6655 -5.2394 -1.6739 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216696184.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:04 Heat of formation + Delta-G solvation = -117.344131 kcal Electronic energy + Delta-G solvation = -15686.951333 eV Core-core repulsion = 12966.346176 eV Total energy + Delta-G solvation = -2720.605157 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.59483 -39.32164 -37.93649 -35.13187 -34.65360 -33.10490 -31.72307 -28.89467 -26.21094 -23.97252 -23.23473 -21.10951 -20.65480 -19.61577 -17.97000 -17.56098 -17.36208 -16.34365 -16.12555 -15.55011 -15.36710 -14.75284 -14.67253 -14.44400 -14.19255 -13.67139 -13.29910 -13.15281 -12.85047 -12.73704 -12.44312 -12.17205 -12.01504 -11.69364 -11.43213 -11.12123 -11.02774 -10.51551 -9.74065 -9.32764 -8.39644 -7.03186 1.28734 1.40564 1.53259 1.59742 2.17531 2.48259 2.55846 3.33627 3.51506 3.63101 3.81958 3.90309 4.24831 4.30922 4.44611 4.48131 4.68492 4.78058 4.87017 4.95839 5.14378 5.19235 5.22520 5.33122 5.42894 5.90858 6.08897 6.10029 6.61232 6.64983 6.78634 7.53993 8.28675 8.53094 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.056934 B = 0.006125 C = 0.005656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.677463 B = 4570.402858 C = 4949.120121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.022 3.978 3 Si 1.011 2.989 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.238 1.238 7 C -0.559 4.559 8 H 0.107 0.893 9 C 0.507 3.493 10 O -0.586 6.586 11 N -0.680 5.680 12 C 0.494 3.506 13 O -0.556 6.556 14 C -0.097 4.097 15 C -0.100 4.100 16 C 0.069 3.931 17 N -0.705 5.705 18 C 0.066 3.934 19 C -0.108 4.108 20 H 0.279 0.721 21 H 0.416 0.584 22 H 0.122 0.878 23 H 0.046 0.954 24 H 0.060 0.940 25 H 0.087 0.913 26 H 0.050 0.950 27 H 0.358 0.642 28 H 0.053 0.947 29 H 0.095 0.905 30 H 0.049 0.951 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.928 -12.396 -1.867 18.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.194 4.194 3 Si 0.829 3.171 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.161 1.161 7 C -0.594 4.594 8 H 0.125 0.875 9 C 0.314 3.686 10 O -0.469 6.469 11 N -0.342 5.342 12 C 0.283 3.717 13 O -0.432 6.432 14 C -0.118 4.118 15 C -0.138 4.138 16 C -0.060 4.060 17 N -0.339 5.339 18 C -0.063 4.063 19 C -0.146 4.146 20 H 0.089 0.911 21 H 0.253 0.747 22 H 0.140 0.860 23 H 0.064 0.936 24 H 0.078 0.922 25 H 0.105 0.895 26 H 0.068 0.932 27 H 0.178 0.822 28 H 0.071 0.929 29 H 0.113 0.887 30 H 0.068 0.932 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.734 -11.952 -2.197 16.893 hybrid contribution 0.600 0.479 0.639 0.999 sum 12.334 -11.474 -1.557 16.917 Atomic orbital electron populations 1.70195 1.10136 1.29691 1.34679 1.27232 0.95520 1.05670 0.90949 0.84820 0.79019 0.74011 0.79299 1.18666 1.19957 1.16103 1.21557 0.95936 0.89113 1.52799 0.87470 1.19199 0.87359 0.84308 0.77710 1.90691 1.16148 1.86704 1.53333 1.44991 1.12377 1.07459 1.69401 1.21983 0.88208 0.87034 0.74499 1.90712 1.16914 1.87990 1.47610 1.21499 0.98002 0.89916 1.02386 1.21398 0.97065 0.93827 1.01522 1.21840 0.96502 0.96122 0.91518 1.60169 1.26672 1.09749 1.37341 1.21899 0.92650 0.89413 1.02295 1.21630 0.98320 0.99672 0.94996 0.91091 0.74735 0.85979 0.93557 0.92151 0.89452 0.93190 0.82157 0.92877 0.88670 0.93218 0.89065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.60 11.85 21.85 0.26 -50.34 16 2 C 0.02 1.22 5.50 85.33 0.47 1.69 16 3 Si 1.01 39.33 29.56 68.60 2.03 41.36 16 4 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 5 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 6 H -0.24 -8.27 7.11 99.48 0.71 -7.56 16 7 C -0.56 -30.72 9.53 24.81 0.24 -30.49 16 8 H 0.11 4.97 7.86 -2.91 -0.02 4.95 16 9 C 0.51 30.27 7.67 86.31 0.66 30.94 16 10 O -0.59 -42.25 13.44 18.55 0.25 -42.00 16 11 N -0.68 -30.97 5.14 -430.74 -2.21 -33.18 16 12 C 0.49 22.24 7.09 87.65 0.62 22.86 16 13 O -0.56 -32.29 14.38 19.82 0.28 -32.01 16 14 C -0.10 -2.86 2.59 -11.46 -0.03 -2.89 16 15 C -0.10 -2.92 4.68 30.65 0.14 -2.78 16 16 C 0.07 1.36 6.55 86.33 0.57 1.93 16 17 N -0.71 -12.84 6.85 -514.03 -3.52 -16.35 16 18 C 0.07 1.11 6.55 86.32 0.57 1.68 16 19 C -0.11 -2.59 5.26 30.65 0.16 -2.43 16 20 H 0.28 15.54 8.29 -92.71 -0.77 14.77 16 21 H 0.42 14.29 8.16 -92.70 -0.76 13.53 16 22 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 23 H 0.05 1.64 8.04 -2.39 -0.02 1.62 16 24 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 25 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.36 4.49 8.90 -89.69 -0.80 3.70 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.69 16 29 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.09 1.85 7.66 -2.39 -0.02 1.83 16 Total: -1.00 -87.69 263.87 0.09 -87.60 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: -0.40 Total: 24.42 kcal Atomic # 6 Polarization: 17.11 SS G_CDS: 3.40 Total: 20.51 kcal Atomic # 7 Polarization: -94.40 SS G_CDS: -5.47 Total: -99.88 kcal Atomic # 8 Polarization: -74.54 SS G_CDS: 0.53 Total: -74.01 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Total: -87.69 0.09 -87.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216696184.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.743 kcal (2) G-P(sol) polarization free energy of solvation -87.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds