Wall clock time and date at job start Mon Mar 30 2020 03:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.99944 * 2 1 4 4 C 1.50699 * 109.47363 * 59.83800 * 3 2 1 5 5 H 1.08001 * 119.99696 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00242 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00011 * 0.02562 * 6 4 3 8 8 Si 1.86807 * 120.00178 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.46812 * 59.99952 * 8 6 4 10 10 H 1.48495 * 109.47036 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46842 * 300.00275 * 8 6 4 12 12 C 1.51446 * 109.98521 * 121.29017 * 2 1 3 13 13 O 1.20758 * 126.34070 * 299.68962 * 12 2 1 14 14 C 1.51844 * 107.31493 * 119.70648 * 12 2 1 15 15 C 1.54886 * 104.43285 * 336.21073 * 14 12 2 16 16 C 1.54273 * 109.98281 * 238.70895 * 2 1 3 17 17 H 1.09005 * 110.57012 * 145.05782 * 16 2 1 18 18 C 1.50697 * 110.57315 * 22.34085 * 16 2 1 19 19 O 1.20828 * 119.99997 * 264.43189 * 18 16 2 20 20 O 1.34225 * 120.00091 * 84.43328 * 18 16 2 21 21 H 1.08998 * 109.47212 * 292.98952 * 1 2 3 22 22 H 1.09001 * 109.47323 * 52.99641 * 1 2 3 23 23 H 1.09002 * 109.46795 * 172.99849 * 1 2 3 24 24 H 1.08998 * 109.47146 * 179.83793 * 3 2 1 25 25 H 1.08997 * 109.47083 * 299.83815 * 3 2 1 26 26 H 0.97002 * 119.99927 * 180.02562 * 7 6 4 27 27 H 1.08999 * 110.44067 * 94.94953 * 14 12 2 28 28 H 1.09003 * 110.43933 * 217.47041 * 14 12 2 29 29 H 1.09001 * 110.83022 * 155.84034 * 15 14 12 30 30 H 1.09000 * 110.83381 * 279.41092 * 15 14 12 31 31 H 0.96704 * 117.00426 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0533 1.4377 0.0000 4 6 1.5543 2.1540 1.2284 5 1 0.9270 1.6354 1.9384 6 6 1.8994 3.4708 1.4465 7 7 2.6636 4.1021 0.5823 8 14 1.2814 4.3585 2.9696 9 1 1.7668 3.6546 4.1837 10 1 1.7902 5.7535 2.9701 11 1 -0.2035 4.3725 2.9660 12 6 2.0477 -0.7392 1.2162 13 8 1.8395 -0.4519 2.3705 14 6 2.8772 -1.9082 0.7154 15 6 2.3366 -2.1827 -0.7099 16 6 2.0573 -0.7530 -1.2390 17 1 2.9744 -0.2920 -1.6058 18 6 1.0118 -0.7849 -2.3239 19 8 0.2842 -1.7432 -2.4338 20 8 0.8890 0.2514 -3.1681 21 1 -0.3633 0.4014 0.9460 22 1 -0.3634 0.6185 -0.8207 23 1 -0.3633 -1.0200 -0.1253 24 1 3.1432 1.4277 0.0029 25 1 1.6971 1.9540 -0.8914 26 1 2.9067 5.0286 0.7359 27 1 3.9323 -1.6374 0.6768 28 1 2.7301 -2.7801 1.3529 29 1 3.0891 -2.6819 -1.3203 30 1 1.4178 -2.7677 -0.6700 31 1 0.2039 0.1854 -3.8474 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238472285.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:29 Heat of formation + Delta-G solvation = -145.967899 kcal Electronic energy + Delta-G solvation = -16354.561218 eV Core-core repulsion = 13600.422090 eV Total energy + Delta-G solvation = -2754.139128 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.67960 -38.97230 -36.19508 -35.60519 -33.27663 -31.39282 -28.11428 -27.03074 -24.68949 -23.07691 -21.88057 -19.84384 -18.16384 -17.63196 -16.47938 -16.32491 -15.57591 -15.06307 -14.59220 -14.36919 -13.83902 -13.11355 -12.80195 -12.76211 -12.38385 -12.04976 -11.77115 -11.39038 -11.27530 -11.19604 -11.04519 -10.83151 -10.71318 -10.44495 -10.36895 -10.26048 -9.48521 -9.12152 -8.50551 -8.26022 -5.98080 -3.98326 2.45849 2.66676 3.32293 3.38537 3.41420 3.47151 4.48455 4.61378 4.67794 5.05466 5.27171 5.38504 5.47666 5.56901 5.58106 5.70129 5.88008 5.94520 6.10974 6.17739 6.30276 6.44304 6.73277 6.77073 6.85240 7.51619 7.59054 8.01204 8.16907 8.23578 8.37266 9.08310 9.65871 11.13268 Molecular weight = 226.10amu Principal moments of inertia in cm(-1) A = 0.030793 B = 0.009840 C = 0.008443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.078921 B = 2844.841996 C = 3315.577344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.100 4.100 3 C 0.041 3.959 4 C -0.515 4.515 5 H 0.068 0.932 6 C 0.058 3.942 7 N -0.898 5.898 8 Si 0.891 3.109 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.277 1.277 12 C 0.387 3.613 13 O -0.422 6.422 14 C -0.184 4.184 15 C -0.104 4.104 16 C -0.086 4.086 17 H 0.115 0.885 18 C 0.501 3.499 19 O -0.527 6.527 20 O -0.507 6.507 21 H 0.076 0.924 22 H 0.059 0.941 23 H 0.044 0.956 24 H 0.021 0.979 25 H 0.035 0.965 26 H 0.260 0.740 27 H 0.103 0.897 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.474 -10.194 -5.728 11.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.101 4.101 3 C 0.004 3.996 4 C -0.553 4.553 5 H 0.087 0.913 6 C -0.143 4.143 7 N -0.538 5.538 8 Si 0.719 3.281 9 H -0.202 1.202 10 H -0.215 1.215 11 H -0.203 1.203 12 C 0.259 3.741 13 O -0.291 6.291 14 C -0.222 4.222 15 C -0.142 4.142 16 C -0.105 4.105 17 H 0.133 0.867 18 C 0.345 3.655 19 O -0.416 6.416 20 O -0.317 6.317 21 H 0.095 0.905 22 H 0.077 0.923 23 H 0.063 0.937 24 H 0.039 0.961 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.121 0.879 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -0.396 -10.087 -4.851 11.200 hybrid contribution -0.639 0.621 0.159 0.905 sum -1.035 -9.466 -4.692 10.616 Atomic orbital electron populations 1.21799 0.92834 1.00189 1.03978 1.21808 0.97460 1.00152 0.90696 1.19176 0.96235 0.85441 0.98733 1.21275 1.31243 0.96238 1.06570 0.91342 1.24955 0.95216 0.97613 0.96466 1.69951 1.36726 1.11323 1.35782 0.86660 0.79185 0.78402 0.83837 1.20172 1.21472 1.20284 1.24468 0.77160 0.83032 0.89439 1.90368 1.51711 1.65755 1.21316 1.22964 1.01993 0.99846 0.97421 1.22414 1.02304 0.94517 0.94918 1.22010 0.97337 0.98881 0.92270 0.86741 1.23187 0.83159 0.78803 0.80380 1.90654 1.44404 1.35020 1.71570 1.84659 1.57858 1.45436 1.43758 0.90540 0.92253 0.93660 0.96109 0.94723 0.93037 0.87920 0.89180 0.90283 0.89416 0.73912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 7.01 37.16 0.26 -2.26 16 2 C -0.10 -1.95 0.57 -154.63 -0.09 -2.04 16 3 C 0.04 1.00 3.92 -27.88 -0.11 0.89 16 4 C -0.52 -14.28 7.61 -34.44 -0.26 -14.54 16 5 H 0.07 1.93 5.53 -52.49 -0.29 1.64 16 6 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 7 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 8 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 9 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.39 7.51 6.29 -28.10 -0.18 7.33 16 13 O -0.42 -9.71 16.16 6.00 0.10 -9.62 16 14 C -0.18 -2.59 6.72 -26.32 -0.18 -2.76 16 15 C -0.10 -1.36 6.18 -24.69 -0.15 -1.51 16 16 C -0.09 -1.35 2.85 -90.06 -0.26 -1.60 16 17 H 0.11 1.71 7.85 -51.93 -0.41 1.30 16 18 C 0.50 7.84 5.47 36.00 0.20 8.03 16 19 O -0.53 -8.89 15.90 -18.75 -0.30 -9.19 16 20 O -0.51 -7.16 13.41 -39.24 -0.53 -7.69 16 21 H 0.08 1.60 6.90 -51.93 -0.36 1.24 16 22 H 0.06 1.13 7.45 -51.93 -0.39 0.74 16 23 H 0.04 0.79 7.42 -51.93 -0.39 0.41 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.09 1.19 7.25 -51.93 -0.38 0.82 16 31 H 0.40 3.68 9.10 45.56 0.41 4.10 16 LS Contribution 262.22 15.07 3.95 3.95 Total: -1.00 -32.91 262.22 -4.96 -37.87 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -3.04 Total: 0.18 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -0.86 Total: -6.89 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: 0.74 Total: -25.83 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.73 Total: -26.50 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.91 -4.96 -37.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238472285.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.099 kcal (2) G-P(sol) polarization free energy of solvation -32.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds