Wall clock time and date at job start Mon Mar 30 2020 03:13:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52998 * 109.99944 * 2 1
4 4 C 1.50699 * 109.47363 * 59.83800 * 3 2 1
5 5 H 1.08001 * 119.99696 * 0.02562 * 4 3 2
6 6 C 1.37870 * 120.00242 * 179.97438 * 4 3 2
7 7 N 1.31511 * 120.00011 * 0.02562 * 6 4 3
8 8 Si 1.86807 * 120.00178 * 180.02562 * 6 4 3
9 9 H 1.48495 * 109.46812 * 59.99952 * 8 6 4
10 10 H 1.48495 * 109.47036 * 179.97438 * 8 6 4
11 11 H 1.48498 * 109.46842 * 300.00275 * 8 6 4
12 12 C 1.51446 * 109.98521 * 121.29017 * 2 1 3
13 13 O 1.20758 * 126.34070 * 299.68962 * 12 2 1
14 14 C 1.51844 * 107.31493 * 119.70648 * 12 2 1
15 15 C 1.54886 * 104.43285 * 336.21073 * 14 12 2
16 16 C 1.54273 * 109.98281 * 238.70895 * 2 1 3
17 17 H 1.09005 * 110.57012 * 145.05782 * 16 2 1
18 18 C 1.50697 * 110.57315 * 22.34085 * 16 2 1
19 19 O 1.20828 * 119.99997 * 264.43189 * 18 16 2
20 20 O 1.34225 * 120.00091 * 84.43328 * 18 16 2
21 21 H 1.08998 * 109.47212 * 292.98952 * 1 2 3
22 22 H 1.09001 * 109.47323 * 52.99641 * 1 2 3
23 23 H 1.09002 * 109.46795 * 172.99849 * 1 2 3
24 24 H 1.08998 * 109.47146 * 179.83793 * 3 2 1
25 25 H 1.08997 * 109.47083 * 299.83815 * 3 2 1
26 26 H 0.97002 * 119.99927 * 180.02562 * 7 6 4
27 27 H 1.08999 * 110.44067 * 94.94953 * 14 12 2
28 28 H 1.09003 * 110.43933 * 217.47041 * 14 12 2
29 29 H 1.09001 * 110.83022 * 155.84034 * 15 14 12
30 30 H 1.09000 * 110.83381 * 279.41092 * 15 14 12
31 31 H 0.96704 * 117.00426 * 180.02562 * 20 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0533 1.4377 0.0000
4 6 1.5543 2.1540 1.2284
5 1 0.9270 1.6354 1.9384
6 6 1.8994 3.4708 1.4465
7 7 2.6636 4.1021 0.5823
8 14 1.2814 4.3585 2.9696
9 1 1.7668 3.6546 4.1837
10 1 1.7902 5.7535 2.9701
11 1 -0.2035 4.3725 2.9660
12 6 2.0477 -0.7392 1.2162
13 8 1.8395 -0.4519 2.3705
14 6 2.8772 -1.9082 0.7154
15 6 2.3366 -2.1827 -0.7099
16 6 2.0573 -0.7530 -1.2390
17 1 2.9744 -0.2920 -1.6058
18 6 1.0118 -0.7849 -2.3239
19 8 0.2842 -1.7432 -2.4338
20 8 0.8890 0.2514 -3.1681
21 1 -0.3633 0.4014 0.9460
22 1 -0.3634 0.6185 -0.8207
23 1 -0.3633 -1.0200 -0.1253
24 1 3.1432 1.4277 0.0029
25 1 1.6971 1.9540 -0.8914
26 1 2.9067 5.0286 0.7359
27 1 3.9323 -1.6374 0.6768
28 1 2.7301 -2.7801 1.3529
29 1 3.0891 -2.6819 -1.3203
30 1 1.4178 -2.7677 -0.6700
31 1 0.2039 0.1854 -3.8474
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000238472285.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:13:29
Heat of formation + Delta-G solvation = -145.967899 kcal
Electronic energy + Delta-G solvation = -16354.561218 eV
Core-core repulsion = 13600.422090 eV
Total energy + Delta-G solvation = -2754.139128 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 226.104 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-40.67960 -38.97230 -36.19508 -35.60519 -33.27663 -31.39282 -28.11428 -27.03074
-24.68949 -23.07691 -21.88057 -19.84384 -18.16384 -17.63196 -16.47938 -16.32491
-15.57591 -15.06307 -14.59220 -14.36919 -13.83902 -13.11355 -12.80195 -12.76211
-12.38385 -12.04976 -11.77115 -11.39038 -11.27530 -11.19604 -11.04519 -10.83151
-10.71318 -10.44495 -10.36895 -10.26048 -9.48521 -9.12152 -8.50551 -8.26022
-5.98080 -3.98326 2.45849 2.66676 3.32293 3.38537 3.41420 3.47151
4.48455 4.61378 4.67794 5.05466 5.27171 5.38504 5.47666 5.56901
5.58106 5.70129 5.88008 5.94520 6.10974 6.17739 6.30276 6.44304
6.73277 6.77073 6.85240 7.51619 7.59054 8.01204 8.16907 8.23578
8.37266 9.08310 9.65871 11.13268
Molecular weight = 226.10amu
Principal moments of inertia in cm(-1)
A = 0.030793 B = 0.009840 C = 0.008443
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 909.078921 B = 2844.841996 C = 3315.577344
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.100 4.100
3 C 0.041 3.959
4 C -0.515 4.515
5 H 0.068 0.932
6 C 0.058 3.942
7 N -0.898 5.898
8 Si 0.891 3.109
9 H -0.276 1.276
10 H -0.289 1.289
11 H -0.277 1.277
12 C 0.387 3.613
13 O -0.422 6.422
14 C -0.184 4.184
15 C -0.104 4.104
16 C -0.086 4.086
17 H 0.115 0.885
18 C 0.501 3.499
19 O -0.527 6.527
20 O -0.507 6.507
21 H 0.076 0.924
22 H 0.059 0.941
23 H 0.044 0.956
24 H 0.021 0.979
25 H 0.035 0.965
26 H 0.260 0.740
27 H 0.103 0.897
28 H 0.090 0.910
29 H 0.079 0.921
30 H 0.087 0.913
31 H 0.403 0.597
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.474 -10.194 -5.728 11.703
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.101 4.101
3 C 0.004 3.996
4 C -0.553 4.553
5 H 0.087 0.913
6 C -0.143 4.143
7 N -0.538 5.538
8 Si 0.719 3.281
9 H -0.202 1.202
10 H -0.215 1.215
11 H -0.203 1.203
12 C 0.259 3.741
13 O -0.291 6.291
14 C -0.222 4.222
15 C -0.142 4.142
16 C -0.105 4.105
17 H 0.133 0.867
18 C 0.345 3.655
19 O -0.416 6.416
20 O -0.317 6.317
21 H 0.095 0.905
22 H 0.077 0.923
23 H 0.063 0.937
24 H 0.039 0.961
25 H 0.053 0.947
26 H 0.070 0.930
27 H 0.121 0.879
28 H 0.108 0.892
29 H 0.097 0.903
30 H 0.106 0.894
31 H 0.261 0.739
Dipole moment (debyes) X Y Z Total
from point charges -0.396 -10.087 -4.851 11.200
hybrid contribution -0.639 0.621 0.159 0.905
sum -1.035 -9.466 -4.692 10.616
Atomic orbital electron populations
1.21799 0.92834 1.00189 1.03978 1.21808 0.97460 1.00152 0.90696
1.19176 0.96235 0.85441 0.98733 1.21275 1.31243 0.96238 1.06570
0.91342 1.24955 0.95216 0.97613 0.96466 1.69951 1.36726 1.11323
1.35782 0.86660 0.79185 0.78402 0.83837 1.20172 1.21472 1.20284
1.24468 0.77160 0.83032 0.89439 1.90368 1.51711 1.65755 1.21316
1.22964 1.01993 0.99846 0.97421 1.22414 1.02304 0.94517 0.94918
1.22010 0.97337 0.98881 0.92270 0.86741 1.23187 0.83159 0.78803
0.80380 1.90654 1.44404 1.35020 1.71570 1.84659 1.57858 1.45436
1.43758 0.90540 0.92253 0.93660 0.96109 0.94723 0.93037 0.87920
0.89180 0.90283 0.89416 0.73912
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.52 7.01 37.16 0.26 -2.26 16
2 C -0.10 -1.95 0.57 -154.63 -0.09 -2.04 16
3 C 0.04 1.00 3.92 -27.88 -0.11 0.89 16
4 C -0.52 -14.28 7.61 -34.44 -0.26 -14.54 16
5 H 0.07 1.93 5.53 -52.49 -0.29 1.64 16
6 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16
7 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16
8 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16
9 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16
10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16
11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16
12 C 0.39 7.51 6.29 -28.10 -0.18 7.33 16
13 O -0.42 -9.71 16.16 6.00 0.10 -9.62 16
14 C -0.18 -2.59 6.72 -26.32 -0.18 -2.76 16
15 C -0.10 -1.36 6.18 -24.69 -0.15 -1.51 16
16 C -0.09 -1.35 2.85 -90.06 -0.26 -1.60 16
17 H 0.11 1.71 7.85 -51.93 -0.41 1.30 16
18 C 0.50 7.84 5.47 36.00 0.20 8.03 16
19 O -0.53 -8.89 15.90 -18.75 -0.30 -9.19 16
20 O -0.51 -7.16 13.41 -39.24 -0.53 -7.69 16
21 H 0.08 1.60 6.90 -51.93 -0.36 1.24 16
22 H 0.06 1.13 7.45 -51.93 -0.39 0.74 16
23 H 0.04 0.79 7.42 -51.93 -0.39 0.41 16
24 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16
25 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16
26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16
27 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16
28 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16
29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16
30 H 0.09 1.19 7.25 -51.93 -0.38 0.82 16
31 H 0.40 3.68 9.10 45.56 0.41 4.10 16
LS Contribution 262.22 15.07 3.95 3.95
Total: -1.00 -32.91 262.22 -4.96 -37.87
By element:
Atomic # 1 Polarization: 3.22 SS G_CDS: -3.04 Total: 0.18 kcal
Atomic # 6 Polarization: -6.03 SS G_CDS: -0.86 Total: -6.89 kcal
Atomic # 7 Polarization: -26.57 SS G_CDS: 0.74 Total: -25.83 kcal
Atomic # 8 Polarization: -25.77 SS G_CDS: -0.73 Total: -26.50 kcal
Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal
Total LS contribution 3.95 Total: 3.95 kcal
Total: -32.91 -4.96 -37.87 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238472285.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -108.099 kcal
(2) G-P(sol) polarization free energy of solvation -32.908 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.007 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.961 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.869 kcal
(6) G-S(sol) free energy of system = (1) + (5) -145.968 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds