Wall clock time and date at job start Mon Mar 30 2020 03:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.99944 * 2 1 4 4 C 1.50699 * 109.47363 * 59.83800 * 3 2 1 5 5 H 1.08001 * 119.99696 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00242 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00011 * 0.02562 * 6 4 3 8 8 Si 1.86807 * 120.00178 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.46812 * 59.99952 * 8 6 4 10 10 H 1.48495 * 109.47036 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46842 * 300.00275 * 8 6 4 12 12 C 1.51446 * 109.98521 * 121.29017 * 2 1 3 13 13 O 1.20758 * 126.34070 * 299.68962 * 12 2 1 14 14 C 1.51844 * 107.31493 * 119.70648 * 12 2 1 15 15 C 1.54886 * 104.43285 * 336.21073 * 14 12 2 16 16 C 1.54273 * 109.98281 * 238.70895 * 2 1 3 17 17 H 1.09005 * 110.57012 * 145.05782 * 16 2 1 18 18 C 1.50697 * 110.57315 * 22.34085 * 16 2 1 19 19 O 1.20828 * 119.99997 * 264.43189 * 18 16 2 20 20 O 1.34225 * 120.00091 * 84.43328 * 18 16 2 21 21 H 1.08998 * 109.47212 * 292.98952 * 1 2 3 22 22 H 1.09001 * 109.47323 * 52.99641 * 1 2 3 23 23 H 1.09002 * 109.46795 * 172.99849 * 1 2 3 24 24 H 1.08998 * 109.47146 * 179.83793 * 3 2 1 25 25 H 1.08997 * 109.47083 * 299.83815 * 3 2 1 26 26 H 0.97002 * 119.99927 * 180.02562 * 7 6 4 27 27 H 1.08999 * 110.44067 * 94.94953 * 14 12 2 28 28 H 1.09003 * 110.43933 * 217.47041 * 14 12 2 29 29 H 1.09001 * 110.83022 * 155.84034 * 15 14 12 30 30 H 1.09000 * 110.83381 * 279.41092 * 15 14 12 31 31 H 0.96704 * 117.00426 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0533 1.4377 0.0000 4 6 1.5543 2.1540 1.2284 5 1 0.9270 1.6354 1.9384 6 6 1.8994 3.4708 1.4465 7 7 2.6636 4.1021 0.5823 8 14 1.2814 4.3585 2.9696 9 1 1.7668 3.6546 4.1837 10 1 1.7902 5.7535 2.9701 11 1 -0.2035 4.3725 2.9660 12 6 2.0477 -0.7392 1.2162 13 8 1.8395 -0.4519 2.3705 14 6 2.8772 -1.9082 0.7154 15 6 2.3366 -2.1827 -0.7099 16 6 2.0573 -0.7530 -1.2390 17 1 2.9744 -0.2920 -1.6058 18 6 1.0118 -0.7849 -2.3239 19 8 0.2842 -1.7432 -2.4338 20 8 0.8890 0.2514 -3.1681 21 1 -0.3633 0.4014 0.9460 22 1 -0.3634 0.6185 -0.8207 23 1 -0.3633 -1.0200 -0.1253 24 1 3.1432 1.4277 0.0029 25 1 1.6971 1.9540 -0.8914 26 1 2.9067 5.0286 0.7359 27 1 3.9323 -1.6374 0.6768 28 1 2.7301 -2.7801 1.3529 29 1 3.0891 -2.6819 -1.3203 30 1 1.4178 -2.7677 -0.6700 31 1 0.2039 0.1854 -3.8474 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238472285.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:29 Heat of formation + Delta-G solvation = -168.466043 kcal Electronic energy + Delta-G solvation = -16355.536811 eV Core-core repulsion = 13600.422090 eV Total energy + Delta-G solvation = -2755.114721 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.00290 -40.37854 -37.58972 -36.92412 -35.17766 -33.07560 -29.55393 -28.79095 -26.37537 -24.47379 -23.51939 -21.10673 -19.61365 -18.91969 -18.38985 -17.65817 -17.07999 -16.59303 -16.21190 -15.98213 -15.39308 -14.56063 -14.38131 -14.29500 -13.79039 -13.67803 -13.27945 -13.12571 -12.86093 -12.67230 -12.62202 -12.41364 -12.28266 -12.21835 -11.73614 -11.68085 -11.32360 -10.98237 -10.57297 -9.99077 -8.17482 -6.22668 1.15006 1.22239 1.36774 1.38972 1.47029 2.21038 2.41853 3.16408 3.28635 3.45089 3.70947 4.05400 4.20923 4.26845 4.38293 4.44226 4.53649 4.74252 4.79533 4.99337 5.00425 5.16902 5.18578 5.27971 5.46014 5.56416 5.66881 5.83958 6.25588 6.72234 6.91791 7.08652 7.44341 8.93650 Molecular weight = 226.10amu Principal moments of inertia in cm(-1) A = 0.030793 B = 0.009840 C = 0.008443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.078921 B = 2844.841996 C = 3315.577344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.105 4.105 3 C 0.050 3.950 4 C -0.524 4.524 5 H 0.059 0.941 6 C 0.006 3.994 7 N -0.928 5.928 8 Si 0.947 3.053 9 H -0.278 1.278 10 H -0.280 1.280 11 H -0.270 1.270 12 C 0.375 3.625 13 O -0.468 6.468 14 C -0.170 4.170 15 C -0.092 4.092 16 C -0.085 4.085 17 H 0.123 0.877 18 C 0.505 3.495 19 O -0.538 6.538 20 O -0.513 6.513 21 H 0.050 0.950 22 H 0.055 0.945 23 H 0.064 0.936 24 H 0.003 0.997 25 H 0.013 0.987 26 H 0.262 0.738 27 H 0.123 0.877 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.086 0.914 31 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.178 -11.708 -6.217 13.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.106 4.106 3 C 0.013 3.987 4 C -0.562 4.562 5 H 0.077 0.923 6 C -0.191 4.191 7 N -0.569 5.569 8 Si 0.773 3.227 9 H -0.204 1.204 10 H -0.205 1.205 11 H -0.195 1.195 12 C 0.251 3.749 13 O -0.342 6.342 14 C -0.207 4.207 15 C -0.129 4.129 16 C -0.104 4.104 17 H 0.141 0.859 18 C 0.349 3.651 19 O -0.429 6.429 20 O -0.326 6.326 21 H 0.069 0.931 22 H 0.074 0.926 23 H 0.083 0.917 24 H 0.022 0.978 25 H 0.031 0.969 26 H 0.071 0.929 27 H 0.141 0.859 28 H 0.133 0.867 29 H 0.135 0.865 30 H 0.105 0.895 31 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -0.114 -11.605 -5.374 12.789 hybrid contribution -0.763 1.118 0.252 1.376 sum -0.877 -10.487 -5.122 11.704 Atomic orbital electron populations 1.21695 0.92981 1.01025 1.02358 1.21724 0.97454 0.97879 0.93572 1.18941 0.94946 0.88470 0.96351 1.21596 1.30624 0.96564 1.07404 0.92319 1.25711 0.95659 0.98609 0.99163 1.70045 1.37916 1.11629 1.37328 0.85779 0.78979 0.77568 0.80415 1.20382 1.20527 1.19549 1.25174 0.76925 0.84378 0.88438 1.90341 1.53437 1.67473 1.22920 1.22951 1.01778 0.97943 0.98063 1.22457 1.03393 0.92648 0.94383 1.22004 0.97511 1.00289 0.90642 0.85933 1.23080 0.82817 0.78765 0.80453 1.90652 1.44744 1.35476 1.72032 1.84618 1.58833 1.44894 1.44293 0.93088 0.92648 0.91723 0.97843 0.96872 0.92950 0.85871 0.86658 0.86456 0.89525 0.71466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.74 7.01 71.98 0.50 -4.24 16 2 C -0.11 -4.05 0.57 -52.26 -0.03 -4.08 16 3 C 0.05 2.48 3.92 29.85 0.12 2.60 16 4 C -0.52 -29.68 7.61 25.60 0.19 -29.48 16 5 H 0.06 3.40 5.53 -2.91 -0.02 3.38 16 6 C 0.01 0.36 5.46 84.65 0.46 0.82 16 7 N -0.93 -55.75 13.29 21.44 0.28 -55.47 16 8 Si 0.95 46.15 29.54 68.60 2.03 48.18 16 9 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 10 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 11 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 12 C 0.38 14.24 6.29 29.71 0.19 14.42 16 13 O -0.47 -21.75 16.16 -1.44 -0.02 -21.78 16 14 C -0.17 -4.20 6.72 30.86 0.21 -3.99 16 15 C -0.09 -2.03 6.18 31.92 0.20 -1.84 16 16 C -0.09 -2.50 2.85 -10.43 -0.03 -2.52 16 17 H 0.12 3.39 7.85 -2.38 -0.02 3.37 16 18 C 0.50 14.72 5.47 71.24 0.39 15.11 16 19 O -0.54 -16.80 15.90 21.96 0.35 -16.45 16 20 O -0.51 -13.68 13.41 -51.36 -0.69 -14.37 16 21 H 0.05 2.18 6.90 -2.39 -0.02 2.17 16 22 H 0.05 2.12 7.45 -2.39 -0.02 2.10 16 23 H 0.06 2.20 7.42 -2.39 -0.02 2.18 16 24 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 25 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 27 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.09 2.01 7.25 -2.39 -0.02 1.99 16 31 H 0.42 6.95 9.10 -74.05 -0.67 6.28 16 Total: -1.00 -71.85 262.22 4.62 -67.23 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: 0.47 Total: 5.84 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: 2.20 Total: -13.19 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.28 Total: -55.47 kcal Atomic # 8 Polarization: -52.23 SS G_CDS: -0.36 Total: -52.60 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -71.85 4.62 -67.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238472285.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.235 kcal (2) G-P(sol) polarization free energy of solvation -71.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds