Wall clock time and date at job start Mon Mar 30 2020 03:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.98485 * 2 1 4 4 C 1.50697 * 109.47216 * 303.59157 * 3 2 1 5 5 H 1.08001 * 120.00485 * 359.97438 * 4 3 2 6 6 C 1.37883 * 120.00338 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99402 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00222 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47402 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46864 * 120.00013 * 8 6 4 11 11 H 1.48505 * 109.46946 * 239.99728 * 8 6 4 12 12 C 1.51872 * 109.99191 * 238.70023 * 2 1 3 13 13 O 1.20764 * 127.60322 * 84.85640 * 12 2 1 14 14 C 1.52492 * 104.78947 * 264.86809 * 12 2 1 15 15 C 1.54899 * 102.94076 * 321.59232 * 14 12 2 16 16 C 1.53909 * 110.03242 * 121.33147 * 2 1 3 17 17 H 1.09000 * 110.13887 * 359.74042 * 16 2 1 18 18 C 1.50705 * 110.13631 * 238.03340 * 16 2 1 19 19 O 1.20819 * 120.00091 * 273.03647 * 18 16 2 20 20 O 1.34234 * 119.99754 * 93.03088 * 18 16 2 21 21 H 1.08997 * 109.47749 * 59.29669 * 1 2 3 22 22 H 1.09001 * 109.47633 * 179.29623 * 1 2 3 23 23 H 1.09005 * 109.47060 * 299.29306 * 1 2 3 24 24 H 1.09006 * 109.47026 * 63.58832 * 3 2 1 25 25 H 1.09000 * 109.47455 * 183.58587 * 3 2 1 26 26 H 0.97002 * 120.00192 * 179.97438 * 7 6 4 27 27 H 1.08997 * 110.71644 * 79.95472 * 14 12 2 28 28 H 1.08997 * 110.72033 * 203.22869 * 14 12 2 29 29 H 1.09000 * 110.57851 * 156.30958 * 15 14 12 30 30 H 1.09000 * 110.57411 * 279.04284 * 15 14 12 31 31 H 0.96701 * 116.99994 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0529 1.4378 0.0000 4 6 1.4858 2.1786 -1.1835 5 1 0.8194 1.6742 -1.8676 6 6 1.8177 3.5003 -1.3931 7 7 2.6287 4.1147 -0.5598 8 14 1.1153 4.4183 -2.8606 9 1 0.2357 3.5093 -3.6384 10 1 0.3260 5.5826 -2.3845 11 1 2.2256 4.8931 -3.7250 12 6 2.0492 -0.7415 -1.2195 13 8 2.2205 -0.3022 -2.3313 14 6 2.3062 -2.1628 -0.7306 15 6 2.8769 -1.9424 0.6924 16 6 2.0572 -0.7519 1.2351 17 1 1.2243 -1.1135 1.8381 18 6 2.9387 0.1534 2.0564 19 8 4.1165 0.2427 1.8024 20 8 2.4152 0.8606 3.0702 21 1 -0.3634 0.5247 -0.8835 22 1 -0.3634 -1.0276 -0.0126 23 1 -0.3633 0.5028 0.8963 24 1 1.7474 1.9355 0.9205 25 1 3.1409 1.4288 -0.0643 26 1 2.8626 5.0445 -0.7074 27 1 1.3767 -2.7305 -0.6897 28 1 3.0371 -2.6629 -1.3660 29 1 2.7211 -2.8276 1.3091 30 1 3.9365 -1.6912 0.6456 31 1 3.0198 1.4278 3.5681 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238487855.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:34 Heat of formation + Delta-G solvation = -142.005062 kcal Electronic energy + Delta-G solvation = -16501.288614 eV Core-core repulsion = 13747.321328 eV Total energy + Delta-G solvation = -2753.967286 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.57810 -38.78303 -36.09605 -35.42610 -33.28480 -31.33257 -28.20060 -27.07833 -24.60310 -22.81762 -21.95335 -19.78874 -18.07170 -17.50042 -16.57779 -16.11271 -15.27297 -14.90278 -14.74967 -14.27091 -13.99160 -13.04568 -12.73610 -12.54567 -12.32832 -11.93801 -11.73282 -11.56761 -11.41203 -11.03928 -10.88257 -10.82199 -10.65976 -10.48484 -10.31076 -9.98718 -9.42771 -9.06670 -8.49152 -8.22184 -5.94446 -3.93791 2.60965 2.78569 3.36526 3.43908 3.49462 3.49759 4.50323 4.58718 4.74076 5.05097 5.30296 5.42152 5.48098 5.54559 5.65408 5.74822 5.86520 5.93576 6.11337 6.13083 6.31845 6.47114 6.77449 6.86021 7.00460 7.51083 7.61783 8.02220 8.25710 8.38205 8.42388 9.08761 9.68447 11.17433 Molecular weight = 226.10amu Principal moments of inertia in cm(-1) A = 0.027407 B = 0.011318 C = 0.009279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.385035 B = 2473.246771 C = 3016.736136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.106 4.106 3 C 0.026 3.974 4 C -0.500 4.500 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.892 3.108 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.285 1.285 12 C 0.381 3.619 13 O -0.409 6.409 14 C -0.184 4.184 15 C -0.109 4.109 16 C -0.080 4.080 17 H 0.106 0.894 18 C 0.500 3.500 19 O -0.516 6.516 20 O -0.516 6.516 21 H 0.075 0.925 22 H 0.041 0.959 23 H 0.064 0.936 24 H 0.030 0.970 25 H 0.026 0.974 26 H 0.258 0.742 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.909 -11.594 5.904 13.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.107 4.107 3 C -0.011 4.011 4 C -0.538 4.538 5 H 0.082 0.918 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.720 3.280 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.211 1.211 12 C 0.252 3.748 13 O -0.277 6.277 14 C -0.222 4.222 15 C -0.147 4.147 16 C -0.099 4.099 17 H 0.124 0.876 18 C 0.343 3.657 19 O -0.403 6.403 20 O -0.327 6.327 21 H 0.094 0.906 22 H 0.060 0.940 23 H 0.083 0.917 24 H 0.048 0.952 25 H 0.044 0.956 26 H 0.068 0.932 27 H 0.119 0.881 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -2.682 -11.412 5.025 12.755 hybrid contribution 0.158 1.054 -0.272 1.100 sum -2.524 -10.358 4.753 11.673 Atomic orbital electron populations 1.21683 0.91804 1.00073 1.04112 1.21829 0.97732 1.00175 0.91011 1.19387 0.96928 0.86136 0.98654 1.21133 1.27978 0.95467 1.09238 0.91836 1.24975 0.95315 0.97816 0.96426 1.69978 1.35474 1.11408 1.36931 0.86522 0.78891 0.79590 0.82953 1.19667 1.21230 1.21132 1.24775 0.72391 0.89215 0.88399 1.90406 1.39543 1.74861 1.22868 1.23121 1.02916 0.98502 0.97629 1.22323 1.01008 0.96329 0.95034 1.21727 0.97903 0.94400 0.95868 0.87591 1.22979 0.87199 0.78098 0.77459 1.90676 1.18365 1.63951 1.67349 1.84520 1.47197 1.56509 1.44459 0.90566 0.93972 0.91700 0.95235 0.95608 0.93199 0.88113 0.89521 0.90229 0.89187 0.73611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.06 8.01 37.16 0.30 -1.76 16 2 C -0.11 -2.09 0.63 -154.61 -0.10 -2.18 16 3 C 0.03 0.66 2.86 -27.89 -0.08 0.58 16 4 C -0.50 -14.22 7.21 -34.44 -0.25 -14.47 16 5 H 0.06 1.79 5.87 -52.49 -0.31 1.48 16 6 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 7 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 8 Si 0.89 22.63 29.54 -169.99 -5.02 17.61 16 9 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 C 0.38 7.56 6.50 -27.56 -0.18 7.38 16 13 O -0.41 -9.79 16.27 6.00 0.10 -9.70 16 14 C -0.18 -2.54 6.80 -25.99 -0.18 -2.72 16 15 C -0.11 -1.49 6.35 -25.00 -0.16 -1.65 16 16 C -0.08 -1.27 3.08 -90.57 -0.28 -1.55 16 17 H 0.11 1.36 7.68 -51.93 -0.40 0.96 16 18 C 0.50 9.15 5.19 36.01 0.19 9.34 16 19 O -0.52 -11.00 15.74 -18.74 -0.30 -11.29 16 20 O -0.52 -8.25 12.98 -39.27 -0.51 -8.76 16 21 H 0.08 1.48 6.43 -51.93 -0.33 1.14 16 22 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.03 0.80 7.07 -51.93 -0.37 0.43 16 25 H 0.03 0.75 7.09 -51.93 -0.37 0.39 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.09 1.40 6.89 -51.93 -0.36 1.04 16 31 H 0.41 4.97 9.10 45.56 0.41 5.38 16 LS Contribution 260.36 15.07 3.92 3.92 Total: -1.00 -35.11 260.36 -4.87 -39.98 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -2.97 Total: 0.62 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -0.83 Total: -5.50 kcal Atomic # 7 Polarization: -27.62 SS G_CDS: 0.74 Total: -26.88 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.71 Total: -29.75 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -35.11 -4.87 -39.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238487855.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.028 kcal (2) G-P(sol) polarization free energy of solvation -35.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds