Wall clock time and date at job start Mon Mar 30 2020 03:07:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.38234 * 120.00260 * 2 1
4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1
5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2
6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3
7 7 F 1.39902 * 109.47028 * 29.99432 * 6 5 4
8 8 F 1.39901 * 109.47111 * 149.99504 * 6 5 4
9 9 C 1.53001 * 109.47019 * 269.99737 * 6 5 4
10 10 C 1.50702 * 109.47021 * 180.02562 * 9 6 5
11 11 H 1.08001 * 120.00090 * 359.97438 * 10 9 6
12 12 C 1.37873 * 119.99747 * 180.02562 * 10 9 6
13 13 N 1.31513 * 120.00458 * 359.97438 * 12 10 9
14 14 Si 1.86801 * 119.99988 * 179.97438 * 12 10 9
15 15 H 1.48503 * 109.47058 * 59.99686 * 14 12 10
16 16 H 1.48503 * 109.47430 * 179.97438 * 14 12 10
17 17 H 1.48501 * 109.47348 * 300.00083 * 14 12 10
18 18 C 1.38238 * 119.99752 * 359.47832 * 5 4 3
19 19 C 1.38234 * 120.00033 * 0.49775 * 18 5 4
20 20 H 1.09000 * 109.46827 * 89.99810 * 1 2 3
21 21 H 1.08999 * 109.47240 * 210.00239 * 1 2 3
22 22 H 1.08999 * 109.46861 * 329.99859 * 1 2 3
23 23 H 1.07999 * 119.99751 * 359.97438 * 3 2 1
24 24 H 1.08002 * 119.99744 * 179.97438 * 4 3 2
25 25 H 1.09007 * 109.46863 * 299.99725 * 9 6 5
26 26 H 1.08998 * 109.47324 * 59.99807 * 9 6 5
27 27 H 0.97001 * 120.00338 * 180.02562 * 13 12 10
28 28 H 1.07999 * 119.99934 * 180.25938 * 18 5 4
29 29 H 1.08001 * 120.00294 * 179.76453 * 19 18 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1982 1.1971 0.0000
4 6 3.5806 1.1971 0.0005
5 6 4.2717 0.0000 -0.0044
6 6 5.7787 0.0000 -0.0101
7 9 6.2475 1.1410 0.6497
8 9 6.2475 -1.1436 0.6455
9 6 6.2832 0.0027 -1.4546
10 6 7.7902 0.0020 -1.4603
11 1 8.3337 0.0003 -0.5270
12 6 8.4750 0.0047 -2.6569
13 7 7.8132 0.0074 -3.7934
14 14 10.3430 0.0046 -2.6641
15 1 10.8406 -1.2095 -1.9686
16 1 10.8327 0.0072 -4.0660
17 1 10.8408 1.2155 -1.9631
18 6 3.5805 -1.1972 0.0010
19 6 2.1982 -1.1972 0.0009
20 1 -0.3633 0.0000 -1.0277
21 1 -0.3633 -0.8899 0.5139
22 1 -0.3633 0.8900 0.5139
23 1 1.6582 2.1324 -0.0004
24 1 4.1205 2.1325 0.0001
25 1 5.9179 -0.8864 -1.9687
26 1 5.9179 0.8936 -1.9653
27 1 8.2950 0.0089 -4.6353
28 1 4.1205 -2.1325 0.0013
29 1 1.6582 -2.1325 0.0013
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259079978.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:07:27
Heat of formation + Delta-G solvation = -111.066622 kcal
Electronic energy + Delta-G solvation = -15237.253741 eV
Core-core repulsion = 12373.540531 eV
Total energy + Delta-G solvation = -2863.713211 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 226.086 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-49.81920 -47.83093 -40.26750 -35.64531 -34.33343 -31.92629 -31.68767 -28.56034
-25.98142 -23.70405 -23.49358 -21.62055 -19.19220 -18.29503 -17.96621 -17.34627
-16.23496 -16.12169 -15.95624 -15.38248 -14.73641 -14.64925 -14.52384 -14.37687
-14.05301 -13.58781 -13.54781 -13.27773 -12.99403 -12.93744 -12.67364 -12.57134
-12.20314 -11.94892 -11.66627 -11.23253 -10.70415 -9.92947 -9.61706 -8.31773
-6.44890 0.18879 0.40341 1.37097 1.40651 1.49025 2.34593 2.66544
2.86192 3.01149 3.60619 3.65429 4.02609 4.03168 4.04951 4.07809
4.48899 4.51382 4.80248 4.81210 4.91009 5.08645 5.09787 5.22407
5.24603 5.37568 5.55234 5.58655 5.61141 5.92871 6.00993 6.62996
7.23755 8.79679
Molecular weight = 226.09amu
Principal moments of inertia in cm(-1)
A = 0.046740 B = 0.006828 C = 0.006627
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 598.914764 B = 4099.747733 C = 4224.219782
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.110 4.110
2 C -0.078 4.078
3 C -0.122 4.122
4 C -0.102 4.102
5 C -0.167 4.167
6 C 0.335 3.665
7 F -0.209 7.209
8 F -0.209 7.209
9 C 0.003 3.997
10 C -0.553 4.553
11 H 0.054 0.946
12 C 0.012 3.988
13 N -0.923 5.923
14 Si 0.969 3.031
15 H -0.267 1.267
16 H -0.273 1.273
17 H -0.267 1.267
18 C -0.102 4.102
19 C -0.122 4.122
20 H 0.082 0.918
21 H 0.081 0.919
22 H 0.081 0.919
23 H 0.156 0.844
24 H 0.124 0.876
25 H 0.028 0.972
26 H 0.028 0.972
27 H 0.270 0.730
28 H 0.124 0.876
29 H 0.156 0.844
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.816 -0.011 6.538 15.285
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C -0.078 4.078
3 C -0.139 4.139
4 C -0.121 4.121
5 C -0.168 4.168
6 C 0.299 3.701
7 F -0.190 7.190
8 F -0.190 7.190
9 C -0.034 4.034
10 C -0.590 4.590
11 H 0.073 0.927
12 C -0.187 4.187
13 N -0.562 5.562
14 Si 0.792 3.208
15 H -0.192 1.192
16 H -0.198 1.198
17 H -0.192 1.192
18 C -0.121 4.121
19 C -0.139 4.139
20 H 0.101 0.899
21 H 0.100 0.900
22 H 0.100 0.900
23 H 0.173 0.827
24 H 0.142 0.858
25 H 0.046 0.954
26 H 0.046 0.954
27 H 0.079 0.921
28 H 0.142 0.858
29 H 0.173 0.827
Dipole moment (debyes) X Y Z Total
from point charges -13.777 -0.011 6.383 15.184
hybrid contribution 1.509 0.001 -0.131 1.515
sum -12.268 -0.010 6.252 13.769
Atomic orbital electron populations
1.20870 0.87903 1.04302 1.03533 1.20489 0.98300 0.92411 0.96553
1.21327 0.92426 0.99573 1.00614 1.21090 0.95796 0.96697 0.98468
1.20400 0.92476 0.96860 1.07076 1.19909 0.89568 0.70421 0.90164
1.92882 1.90597 1.52186 1.83365 1.92881 1.90597 1.51999 1.83549
1.19885 0.97060 0.98617 0.87882 1.21269 0.91608 1.52856 0.93279
0.92732 1.25865 1.04324 0.93827 0.94691 1.70044 1.37996 1.50128
0.98039 0.85444 0.78418 0.79272 0.77651 1.19224 1.19820 1.19215
1.21092 0.95796 0.96698 0.98470 1.21329 0.92426 0.99572 1.00612
0.89919 0.89968 0.89970 0.82664 0.85769 0.95375 0.95367 0.92121
0.85765 0.82661
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.56 10.01 71.24 0.71 -0.85 15
2 C -0.08 -1.81 5.88 -19.86 -0.12 -1.92 15
3 C -0.12 -3.18 9.70 22.27 0.22 -2.96 15
4 C -0.10 -3.51 9.40 22.27 0.21 -3.30 15
5 C -0.17 -6.63 4.99 -19.87 -0.10 -6.73 15
6 C 0.34 16.04 1.81 29.85 0.05 16.09 15
7 F -0.21 -10.20 15.92 44.97 0.72 -9.48 15
8 F -0.21 -10.20 15.91 44.97 0.72 -9.48 15
9 C 0.00 0.17 4.55 29.85 0.14 0.31 15
10 C -0.55 -32.97 8.58 25.60 0.22 -32.75 15
11 H 0.05 3.26 7.74 -2.91 -0.02 3.24 15
12 C 0.01 0.72 5.46 84.65 0.46 1.18 15
13 N -0.92 -55.73 13.29 21.45 0.28 -55.44 15
14 Si 0.97 45.13 29.54 68.60 2.03 47.16 15
15 H -0.27 -12.09 7.11 99.48 0.71 -11.38 15
16 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15
17 H -0.27 -12.08 7.11 99.48 0.71 -11.38 15
18 C -0.10 -3.51 9.40 22.27 0.21 -3.30 15
19 C -0.12 -3.17 9.70 22.27 0.22 -2.96 15
20 H 0.08 1.06 8.14 -2.39 -0.02 1.04 15
21 H 0.08 0.94 8.09 -2.39 -0.02 0.92 15
22 H 0.08 0.94 8.09 -2.39 -0.02 0.92 15
23 H 0.16 2.97 8.06 -2.91 -0.02 2.95 15
24 H 0.12 4.24 7.60 -2.91 -0.02 4.22 15
25 H 0.03 1.61 8.14 -2.38 -0.02 1.60 15
26 H 0.03 1.62 8.14 -2.39 -0.02 1.60 15
27 H 0.27 15.18 8.31 -92.71 -0.77 14.40 15
28 H 0.12 4.24 7.60 -2.91 -0.02 4.22 15
29 H 0.16 2.97 8.06 -2.91 -0.02 2.95 15
Total: -1.00 -67.63 263.42 7.10 -60.52
By element:
Atomic # 1 Polarization: 2.77 SS G_CDS: 1.14 Total: 3.91 kcal
Atomic # 6 Polarization: -39.41 SS G_CDS: 2.22 Total: -37.19 kcal
Atomic # 7 Polarization: -55.73 SS G_CDS: 0.28 Total: -55.44 kcal
Atomic # 9 Polarization: -20.40 SS G_CDS: 1.43 Total: -18.97 kcal
Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal
Total: -67.63 7.10 -60.52 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259079978.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -50.542 kcal
(2) G-P(sol) polarization free energy of solvation -67.626 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.169 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.102 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.524 kcal
(6) G-S(sol) free energy of system = (1) + (5) -111.067 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds