Wall clock time and date at job start Mon Mar 30 2020 03:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 F 1.39902 * 109.47028 * 29.99432 * 6 5 4 8 8 F 1.39901 * 109.47111 * 149.99504 * 6 5 4 9 9 C 1.53001 * 109.47019 * 269.99737 * 6 5 4 10 10 C 1.50702 * 109.47021 * 180.02562 * 9 6 5 11 11 H 1.08001 * 120.00090 * 359.97438 * 10 9 6 12 12 C 1.37873 * 119.99747 * 180.02562 * 10 9 6 13 13 N 1.31513 * 120.00458 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99988 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47058 * 59.99686 * 14 12 10 16 16 H 1.48503 * 109.47430 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47348 * 300.00083 * 14 12 10 18 18 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 19 19 C 1.38234 * 120.00033 * 0.49775 * 18 5 4 20 20 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 21 21 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 22 22 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 23 23 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 24 24 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 25 25 H 1.09007 * 109.46863 * 299.99725 * 9 6 5 26 26 H 1.08998 * 109.47324 * 59.99807 * 9 6 5 27 27 H 0.97001 * 120.00338 * 180.02562 * 13 12 10 28 28 H 1.07999 * 119.99934 * 180.25938 * 18 5 4 29 29 H 1.08001 * 120.00294 * 179.76453 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 9 6.2475 1.1410 0.6497 8 9 6.2475 -1.1436 0.6455 9 6 6.2832 0.0027 -1.4546 10 6 7.7902 0.0020 -1.4603 11 1 8.3337 0.0003 -0.5270 12 6 8.4750 0.0047 -2.6569 13 7 7.8132 0.0074 -3.7934 14 14 10.3430 0.0046 -2.6641 15 1 10.8406 -1.2095 -1.9686 16 1 10.8327 0.0072 -4.0660 17 1 10.8408 1.2155 -1.9631 18 6 3.5805 -1.1972 0.0010 19 6 2.1982 -1.1972 0.0009 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3633 0.8900 0.5139 23 1 1.6582 2.1324 -0.0004 24 1 4.1205 2.1325 0.0001 25 1 5.9179 -0.8864 -1.9687 26 1 5.9179 0.8936 -1.9653 27 1 8.2950 0.0089 -4.6353 28 1 4.1205 -2.1325 0.0013 29 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259079978.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:27 Heat of formation + Delta-G solvation = -111.066622 kcal Electronic energy + Delta-G solvation = -15237.253741 eV Core-core repulsion = 12373.540531 eV Total energy + Delta-G solvation = -2863.713211 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.81920 -47.83093 -40.26750 -35.64531 -34.33343 -31.92629 -31.68767 -28.56034 -25.98142 -23.70405 -23.49358 -21.62055 -19.19220 -18.29503 -17.96621 -17.34627 -16.23496 -16.12169 -15.95624 -15.38248 -14.73641 -14.64925 -14.52384 -14.37687 -14.05301 -13.58781 -13.54781 -13.27773 -12.99403 -12.93744 -12.67364 -12.57134 -12.20314 -11.94892 -11.66627 -11.23253 -10.70415 -9.92947 -9.61706 -8.31773 -6.44890 0.18879 0.40341 1.37097 1.40651 1.49025 2.34593 2.66544 2.86192 3.01149 3.60619 3.65429 4.02609 4.03168 4.04951 4.07809 4.48899 4.51382 4.80248 4.81210 4.91009 5.08645 5.09787 5.22407 5.24603 5.37568 5.55234 5.58655 5.61141 5.92871 6.00993 6.62996 7.23755 8.79679 Molecular weight = 226.09amu Principal moments of inertia in cm(-1) A = 0.046740 B = 0.006828 C = 0.006627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.914764 B = 4099.747733 C = 4224.219782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.078 4.078 3 C -0.122 4.122 4 C -0.102 4.102 5 C -0.167 4.167 6 C 0.335 3.665 7 F -0.209 7.209 8 F -0.209 7.209 9 C 0.003 3.997 10 C -0.553 4.553 11 H 0.054 0.946 12 C 0.012 3.988 13 N -0.923 5.923 14 Si 0.969 3.031 15 H -0.267 1.267 16 H -0.273 1.273 17 H -0.267 1.267 18 C -0.102 4.102 19 C -0.122 4.122 20 H 0.082 0.918 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.156 0.844 24 H 0.124 0.876 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.270 0.730 28 H 0.124 0.876 29 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.816 -0.011 6.538 15.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.078 4.078 3 C -0.139 4.139 4 C -0.121 4.121 5 C -0.168 4.168 6 C 0.299 3.701 7 F -0.190 7.190 8 F -0.190 7.190 9 C -0.034 4.034 10 C -0.590 4.590 11 H 0.073 0.927 12 C -0.187 4.187 13 N -0.562 5.562 14 Si 0.792 3.208 15 H -0.192 1.192 16 H -0.198 1.198 17 H -0.192 1.192 18 C -0.121 4.121 19 C -0.139 4.139 20 H 0.101 0.899 21 H 0.100 0.900 22 H 0.100 0.900 23 H 0.173 0.827 24 H 0.142 0.858 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.079 0.921 28 H 0.142 0.858 29 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -13.777 -0.011 6.383 15.184 hybrid contribution 1.509 0.001 -0.131 1.515 sum -12.268 -0.010 6.252 13.769 Atomic orbital electron populations 1.20870 0.87903 1.04302 1.03533 1.20489 0.98300 0.92411 0.96553 1.21327 0.92426 0.99573 1.00614 1.21090 0.95796 0.96697 0.98468 1.20400 0.92476 0.96860 1.07076 1.19909 0.89568 0.70421 0.90164 1.92882 1.90597 1.52186 1.83365 1.92881 1.90597 1.51999 1.83549 1.19885 0.97060 0.98617 0.87882 1.21269 0.91608 1.52856 0.93279 0.92732 1.25865 1.04324 0.93827 0.94691 1.70044 1.37996 1.50128 0.98039 0.85444 0.78418 0.79272 0.77651 1.19224 1.19820 1.19215 1.21092 0.95796 0.96698 0.98470 1.21329 0.92426 0.99572 1.00612 0.89919 0.89968 0.89970 0.82664 0.85769 0.95375 0.95367 0.92121 0.85765 0.82661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 10.01 71.24 0.71 -0.85 15 2 C -0.08 -1.81 5.88 -19.86 -0.12 -1.92 15 3 C -0.12 -3.18 9.70 22.27 0.22 -2.96 15 4 C -0.10 -3.51 9.40 22.27 0.21 -3.30 15 5 C -0.17 -6.63 4.99 -19.87 -0.10 -6.73 15 6 C 0.34 16.04 1.81 29.85 0.05 16.09 15 7 F -0.21 -10.20 15.92 44.97 0.72 -9.48 15 8 F -0.21 -10.20 15.91 44.97 0.72 -9.48 15 9 C 0.00 0.17 4.55 29.85 0.14 0.31 15 10 C -0.55 -32.97 8.58 25.60 0.22 -32.75 15 11 H 0.05 3.26 7.74 -2.91 -0.02 3.24 15 12 C 0.01 0.72 5.46 84.65 0.46 1.18 15 13 N -0.92 -55.73 13.29 21.45 0.28 -55.44 15 14 Si 0.97 45.13 29.54 68.60 2.03 47.16 15 15 H -0.27 -12.09 7.11 99.48 0.71 -11.38 15 16 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15 17 H -0.27 -12.08 7.11 99.48 0.71 -11.38 15 18 C -0.10 -3.51 9.40 22.27 0.21 -3.30 15 19 C -0.12 -3.17 9.70 22.27 0.22 -2.96 15 20 H 0.08 1.06 8.14 -2.39 -0.02 1.04 15 21 H 0.08 0.94 8.09 -2.39 -0.02 0.92 15 22 H 0.08 0.94 8.09 -2.39 -0.02 0.92 15 23 H 0.16 2.97 8.06 -2.91 -0.02 2.95 15 24 H 0.12 4.24 7.60 -2.91 -0.02 4.22 15 25 H 0.03 1.61 8.14 -2.38 -0.02 1.60 15 26 H 0.03 1.62 8.14 -2.39 -0.02 1.60 15 27 H 0.27 15.18 8.31 -92.71 -0.77 14.40 15 28 H 0.12 4.24 7.60 -2.91 -0.02 4.22 15 29 H 0.16 2.97 8.06 -2.91 -0.02 2.95 15 Total: -1.00 -67.63 263.42 7.10 -60.52 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: 1.14 Total: 3.91 kcal Atomic # 6 Polarization: -39.41 SS G_CDS: 2.22 Total: -37.19 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: 0.28 Total: -55.44 kcal Atomic # 9 Polarization: -20.40 SS G_CDS: 1.43 Total: -18.97 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -67.63 7.10 -60.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259079978.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.542 kcal (2) G-P(sol) polarization free energy of solvation -67.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds