Wall clock time and date at job start Mon Mar 30 2020 03:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30516 * 1 3 3 Si 1.86800 * 120.00267 * 2 1 4 4 H 1.48499 * 109.47275 * 270.00048 * 3 2 1 5 5 H 1.48498 * 109.46778 * 29.99546 * 3 2 1 6 6 H 1.48498 * 109.47571 * 149.99400 * 3 2 1 7 7 C 1.40468 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00018 * 180.02562 * 7 2 1 9 9 C 1.41019 * 119.99781 * 359.97438 * 7 2 1 10 10 O 1.21437 * 120.00146 * 0.02562 * 9 7 2 11 11 C 1.50695 * 119.99993 * 180.02562 * 9 7 2 12 12 N 1.46903 * 109.47544 * 180.02562 * 11 9 7 13 13 C 1.46896 * 111.00506 * 170.00266 * 12 11 9 14 14 C 1.53232 * 109.34117 * 187.25242 * 13 12 11 15 15 N 1.47074 * 108.52209 * 306.16693 * 14 13 12 16 16 C 1.34777 * 120.88493 * 231.19069 * 15 14 13 17 17 O 1.21288 * 119.99584 * 359.71701 * 16 15 14 18 18 C 1.47083 * 118.23670 * 51.46013 * 15 14 13 19 19 C 1.46905 * 110.99518 * 294.30312 * 12 11 9 20 20 H 0.97001 * 120.00300 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47371 * 60.00382 * 11 9 7 22 22 H 1.09001 * 109.47534 * 300.00553 * 11 9 7 23 23 H 1.09002 * 109.49376 * 67.28470 * 13 12 11 24 24 H 1.09003 * 109.49083 * 307.21558 * 13 12 11 25 25 H 1.09004 * 109.62923 * 186.45721 * 14 13 12 26 26 H 1.08999 * 109.63186 * 65.87949 * 14 13 12 27 27 H 1.08002 * 120.00500 * 180.02562 * 16 15 14 28 28 H 1.08994 * 109.62819 * 68.25136 * 18 15 14 29 29 H 1.09005 * 109.63006 * 188.83694 * 18 15 14 30 30 H 1.08997 * 109.49337 * 292.70449 * 19 12 11 31 31 H 1.08995 * 109.49497 * 52.78447 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6177 0.0000 4 1 2.4868 2.0464 -1.4000 5 1 1.4366 2.6526 0.6999 6 1 3.5367 1.4402 0.7001 7 6 2.0075 -1.2165 0.0005 8 1 3.0875 -1.2165 0.0010 9 6 1.3024 -2.4377 0.0016 10 8 0.0880 -2.4377 0.0016 11 6 2.0558 -3.7428 0.0028 12 7 1.1013 -4.8594 0.0032 13 6 1.7857 -6.1374 -0.2338 14 6 0.7433 -7.2471 -0.4062 15 7 -0.1549 -7.2294 0.7583 16 6 -0.4055 -8.3550 1.4560 17 8 0.1085 -9.4019 1.1229 18 6 -0.7773 -5.9519 1.1377 19 6 0.3297 -4.8919 1.2529 20 1 -0.4850 0.8400 -0.0004 21 1 2.6825 -3.7998 0.8929 22 1 2.6826 -3.8014 -0.8871 23 1 2.4271 -6.3696 0.6164 24 1 2.3913 -6.0636 -1.1371 25 1 1.2439 -8.2134 -0.4678 26 1 0.1680 -7.0711 -1.3151 27 1 -1.0678 -8.3258 2.3086 28 1 -1.4959 -5.6537 0.3743 29 1 -1.2824 -6.0613 2.0974 30 1 0.9913 -5.1415 2.0824 31 1 -0.1208 -3.9149 1.4277 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259325860.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:58 Heat of formation + Delta-G solvation = -60.607952 kcal Electronic energy + Delta-G solvation = -15730.676322 eV Core-core repulsion = 13012.531430 eV Total energy + Delta-G solvation = -2718.144892 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.69294 -37.87394 -36.29101 -33.94412 -32.57295 -30.87525 -28.83953 -26.86554 -24.39874 -23.53424 -21.84303 -19.62950 -19.19876 -17.03022 -16.34964 -15.91607 -15.29938 -14.94858 -14.71696 -14.23118 -14.18677 -13.58741 -13.19806 -12.99355 -12.53251 -12.26176 -11.79556 -11.33987 -11.28307 -11.11810 -10.94287 -10.78587 -10.34589 -10.28150 -10.14173 -9.79493 -8.92180 -8.62425 -7.77513 -7.25847 -6.22936 -4.91939 2.78050 3.02896 3.12070 3.14927 3.20665 3.99888 4.21542 4.44669 4.79728 5.18310 5.27391 5.39812 5.45222 5.51301 5.67005 5.70904 5.91958 6.07216 6.24017 6.31713 6.41322 6.49428 6.68770 6.71659 7.22863 7.44484 7.64602 7.70884 8.05068 8.17191 8.81369 8.87709 10.33248 10.56823 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.073557 B = 0.005815 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.566685 B = 4813.767127 C = 5033.750127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.085 3.915 3 Si 0.904 3.096 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.368 3.632 10 O -0.526 6.526 11 C 0.016 3.984 12 N -0.518 5.518 13 C 0.039 3.961 14 C 0.114 3.886 15 N -0.617 5.617 16 C 0.492 3.508 17 O -0.570 6.570 18 C 0.117 3.883 19 C 0.041 3.959 20 H 0.272 0.728 21 H 0.033 0.967 22 H 0.075 0.925 23 H 0.028 0.972 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.125 0.875 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.021 0.979 31 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.620 -7.073 2.452 7.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.138 4.138 3 Si 0.728 3.272 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.571 4.571 8 H 0.085 0.915 9 C 0.261 3.739 10 O -0.414 6.414 11 C -0.112 4.112 12 N -0.242 5.242 13 C -0.090 4.090 14 C -0.009 4.009 15 N -0.352 5.352 16 C 0.262 3.738 17 O -0.447 6.447 18 C -0.006 4.006 19 C -0.088 4.088 20 H 0.083 0.917 21 H 0.051 0.949 22 H 0.094 0.906 23 H 0.046 0.954 24 H 0.099 0.901 25 H 0.107 0.893 26 H 0.092 0.908 27 H 0.141 0.859 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.039 0.961 31 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.208 -7.521 1.910 7.763 hybrid contribution 1.296 0.812 0.664 1.667 sum 1.088 -6.709 2.575 7.268 Atomic orbital electron populations 1.69937 1.07416 1.27898 1.31669 1.25952 0.94560 1.00767 0.92492 0.86426 0.80442 0.81182 0.79150 1.19467 1.20258 1.18706 1.20748 0.94821 0.91950 1.49583 0.91493 1.19376 0.89207 0.86775 0.78539 1.90354 1.15167 1.88199 1.47678 1.22684 0.94767 0.93975 0.99808 1.61710 1.25936 1.01553 1.35036 1.22494 0.95265 0.90482 1.00805 1.21679 0.91860 0.99044 0.88322 1.48807 1.46284 1.09818 1.30311 1.22605 0.82948 0.82310 0.85957 1.90667 1.53079 1.30650 1.70307 1.21987 0.95944 0.81804 1.00864 1.22688 0.95073 1.01338 0.89660 0.91653 0.94930 0.90641 0.95400 0.90058 0.89319 0.90846 0.85878 0.89995 0.89978 0.96092 0.86480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.68 11.72 55.57 0.65 -20.03 16 2 C 0.09 2.24 5.50 -17.27 -0.10 2.15 16 3 Si 0.90 18.96 29.56 -169.99 -5.03 13.94 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.54 -14.42 9.22 -37.69 -0.35 -14.77 16 8 H 0.07 1.66 7.85 -52.49 -0.41 1.25 16 9 C 0.37 9.76 6.56 -33.26 -0.22 9.54 16 10 O -0.53 -15.43 12.85 5.42 0.07 -15.36 16 11 C 0.02 0.34 5.32 -4.98 -0.03 0.32 16 12 N -0.52 -10.04 4.37 -235.47 -1.03 -11.07 16 13 C 0.04 0.61 5.62 -3.71 -0.02 0.59 16 14 C 0.11 1.69 6.59 -3.61 -0.02 1.66 16 15 N -0.62 -8.86 3.00 -177.27 -0.53 -9.39 16 16 C 0.49 6.71 11.83 54.06 0.64 7.35 16 17 O -0.57 -10.00 16.63 5.55 0.09 -9.90 16 18 C 0.12 1.66 6.71 -3.36 -0.02 1.64 16 19 C 0.04 0.74 5.27 -3.46 -0.02 0.72 16 20 H 0.27 6.87 8.29 -40.82 -0.34 6.53 16 21 H 0.03 0.67 8.12 -51.93 -0.42 0.25 16 22 H 0.08 1.52 7.97 -51.93 -0.41 1.10 16 23 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.08 1.19 7.99 -51.93 -0.41 0.78 16 25 H 0.09 1.30 7.06 -51.93 -0.37 0.93 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.13 1.16 7.93 -52.49 -0.42 0.75 16 28 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.08 0.89 7.86 -51.93 -0.41 0.48 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.12 2.52 5.76 -51.93 -0.30 2.22 16 LS Contribution 263.50 15.07 3.97 3.97 Total: -1.00 -32.43 263.50 -5.91 -38.34 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -3.98 Total: 0.32 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -0.13 Total: 9.20 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: -0.91 Total: -40.50 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: 0.16 Total: -25.27 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -32.43 -5.91 -38.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259325860.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.268 kcal (2) G-P(sol) polarization free energy of solvation -32.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds