Wall clock time and date at job start Mon Mar 30 2020 03:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30516 * 1 3 3 Si 1.86800 * 120.00267 * 2 1 4 4 H 1.48499 * 109.47275 * 270.00048 * 3 2 1 5 5 H 1.48498 * 109.46778 * 29.99546 * 3 2 1 6 6 H 1.48498 * 109.47571 * 149.99400 * 3 2 1 7 7 C 1.40468 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00018 * 180.02562 * 7 2 1 9 9 C 1.41019 * 119.99781 * 359.97438 * 7 2 1 10 10 O 1.21437 * 120.00146 * 0.02562 * 9 7 2 11 11 C 1.50695 * 119.99993 * 180.02562 * 9 7 2 12 12 N 1.46903 * 109.47544 * 180.02562 * 11 9 7 13 13 C 1.46896 * 111.00506 * 170.00266 * 12 11 9 14 14 C 1.53232 * 109.34117 * 187.25242 * 13 12 11 15 15 N 1.47074 * 108.52209 * 306.16693 * 14 13 12 16 16 C 1.34777 * 120.88493 * 231.19069 * 15 14 13 17 17 O 1.21288 * 119.99584 * 359.71701 * 16 15 14 18 18 C 1.47083 * 118.23670 * 51.46013 * 15 14 13 19 19 C 1.46905 * 110.99518 * 294.30312 * 12 11 9 20 20 H 0.97001 * 120.00300 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47371 * 60.00382 * 11 9 7 22 22 H 1.09001 * 109.47534 * 300.00553 * 11 9 7 23 23 H 1.09002 * 109.49376 * 67.28470 * 13 12 11 24 24 H 1.09003 * 109.49083 * 307.21558 * 13 12 11 25 25 H 1.09004 * 109.62923 * 186.45721 * 14 13 12 26 26 H 1.08999 * 109.63186 * 65.87949 * 14 13 12 27 27 H 1.08002 * 120.00500 * 180.02562 * 16 15 14 28 28 H 1.08994 * 109.62819 * 68.25136 * 18 15 14 29 29 H 1.09005 * 109.63006 * 188.83694 * 18 15 14 30 30 H 1.08997 * 109.49337 * 292.70449 * 19 12 11 31 31 H 1.08995 * 109.49497 * 52.78447 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6177 0.0000 4 1 2.4868 2.0464 -1.4000 5 1 1.4366 2.6526 0.6999 6 1 3.5367 1.4402 0.7001 7 6 2.0075 -1.2165 0.0005 8 1 3.0875 -1.2165 0.0010 9 6 1.3024 -2.4377 0.0016 10 8 0.0880 -2.4377 0.0016 11 6 2.0558 -3.7428 0.0028 12 7 1.1013 -4.8594 0.0032 13 6 1.7857 -6.1374 -0.2338 14 6 0.7433 -7.2471 -0.4062 15 7 -0.1549 -7.2294 0.7583 16 6 -0.4055 -8.3550 1.4560 17 8 0.1085 -9.4019 1.1229 18 6 -0.7773 -5.9519 1.1377 19 6 0.3297 -4.8919 1.2529 20 1 -0.4850 0.8400 -0.0004 21 1 2.6825 -3.7998 0.8929 22 1 2.6826 -3.8014 -0.8871 23 1 2.4271 -6.3696 0.6164 24 1 2.3913 -6.0636 -1.1371 25 1 1.2439 -8.2134 -0.4678 26 1 0.1680 -7.0711 -1.3151 27 1 -1.0678 -8.3258 2.3086 28 1 -1.4959 -5.6537 0.3743 29 1 -1.2824 -6.0613 2.0974 30 1 0.9913 -5.1415 2.0824 31 1 -0.1208 -3.9149 1.4277 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259325860.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:58 Heat of formation + Delta-G solvation = -84.703352 kcal Electronic energy + Delta-G solvation = -15731.721177 eV Core-core repulsion = 13012.531430 eV Total energy + Delta-G solvation = -2719.189747 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.93134 -39.43267 -37.98891 -35.38711 -34.56351 -32.14414 -30.53744 -28.59969 -25.96393 -24.81764 -23.13504 -21.36296 -20.57574 -18.33722 -18.19182 -17.24457 -17.04047 -16.18664 -16.12603 -15.78136 -15.75672 -14.84376 -14.73325 -14.59787 -14.26037 -13.76483 -13.29960 -13.04290 -12.85614 -12.52934 -12.35942 -12.24054 -12.14113 -11.99490 -11.85815 -10.97007 -10.89534 -9.90339 -9.42563 -9.06544 -8.20099 -7.02368 1.37265 1.40465 1.55275 1.71181 2.09780 2.23683 2.25465 3.02403 3.42602 3.77734 4.00273 4.02099 4.17410 4.29880 4.35149 4.53849 4.62289 4.70490 4.73805 4.84771 4.88694 5.02482 5.10346 5.24267 5.41006 5.98679 6.03416 6.28537 6.44914 6.78572 6.89727 7.09445 8.35479 8.57965 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.073557 B = 0.005815 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.566685 B = 4813.767127 C = 5033.750127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.033 3.967 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.252 1.252 7 C -0.570 4.570 8 H 0.080 0.920 9 C 0.347 3.653 10 O -0.564 6.564 11 C 0.029 3.971 12 N -0.537 5.537 13 C 0.044 3.956 14 C 0.116 3.884 15 N -0.619 5.619 16 C 0.495 3.505 17 O -0.609 6.609 18 C 0.128 3.872 19 C 0.042 3.958 20 H 0.280 0.720 21 H 0.040 0.960 22 H 0.087 0.913 23 H 0.030 0.970 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.071 0.929 27 H 0.178 0.822 28 H 0.070 0.930 29 H 0.124 0.876 30 H 0.027 0.973 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.302 -7.193 3.027 7.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.186 4.186 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.175 1.175 7 C -0.602 4.602 8 H 0.098 0.902 9 C 0.243 3.757 10 O -0.454 6.454 11 C -0.100 4.100 12 N -0.262 5.262 13 C -0.084 4.084 14 C -0.007 4.007 15 N -0.354 5.354 16 C 0.268 3.732 17 O -0.489 6.489 18 C 0.006 3.994 19 C -0.086 4.086 20 H 0.090 0.910 21 H 0.058 0.942 22 H 0.105 0.895 23 H 0.048 0.952 24 H 0.111 0.889 25 H 0.110 0.890 26 H 0.089 0.911 27 H 0.193 0.807 28 H 0.088 0.912 29 H 0.142 0.858 30 H 0.045 0.955 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.483 -7.656 2.489 8.065 hybrid contribution 1.066 0.817 0.487 1.429 sum 1.549 -6.840 2.977 7.618 Atomic orbital electron populations 1.70059 1.09551 1.29536 1.32543 1.27069 0.95395 1.04989 0.91178 0.85166 0.79047 0.75531 0.79565 1.18604 1.19402 1.17524 1.21281 0.95765 0.93075 1.50084 0.90158 1.20042 0.89098 0.89014 0.77547 1.90323 1.16735 1.89286 1.49103 1.22356 0.94493 0.92542 1.00601 1.61660 1.26086 1.02397 1.36009 1.22511 0.95551 0.88984 1.01374 1.21603 0.91796 0.98558 0.88787 1.48897 1.46132 1.10168 1.30188 1.23492 0.82462 0.80990 0.86285 1.90661 1.54732 1.32049 1.71442 1.21898 0.94225 0.80586 1.02725 1.22580 0.95955 1.00679 0.89402 0.90980 0.94213 0.89522 0.95196 0.88905 0.88968 0.91081 0.80672 0.91195 0.85800 0.95511 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -44.94 11.72 21.91 0.26 -44.68 16 2 C 0.03 1.73 5.50 85.43 0.47 2.20 16 3 Si 0.99 38.57 29.56 68.60 2.03 40.60 16 4 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 5 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 6 H -0.25 -9.29 7.11 99.48 0.71 -8.59 16 7 C -0.57 -30.83 9.22 23.50 0.22 -30.62 16 8 H 0.08 3.97 7.85 -2.91 -0.02 3.94 16 9 C 0.35 18.85 6.56 26.37 0.17 19.02 16 10 O -0.56 -34.28 12.85 -3.52 -0.05 -34.32 16 11 C 0.03 1.23 5.32 85.55 0.46 1.68 16 12 N -0.54 -20.67 4.37 -898.89 -3.93 -24.60 16 13 C 0.04 1.35 5.62 86.38 0.49 1.84 16 14 C 0.12 3.27 6.59 86.35 0.57 3.84 16 15 N -0.62 -16.42 3.00 -833.16 -2.50 -18.92 16 16 C 0.50 12.03 11.83 129.79 1.54 13.56 16 17 O -0.61 -20.15 16.63 -3.05 -0.05 -20.20 16 18 C 0.13 3.43 6.71 86.50 0.58 4.01 16 19 C 0.04 1.52 5.27 86.54 0.46 1.98 16 20 H 0.28 14.35 8.29 -92.71 -0.77 13.58 16 21 H 0.04 1.62 8.12 -2.39 -0.02 1.60 16 22 H 0.09 3.44 7.97 -2.39 -0.02 3.42 16 23 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.09 2.59 7.99 -2.39 -0.02 2.57 16 25 H 0.09 2.57 7.06 -2.39 -0.02 2.56 16 26 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.18 2.45 7.93 -2.91 -0.02 2.43 16 28 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.12 2.27 7.86 -2.38 -0.02 2.25 16 30 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 3.44 5.76 -2.39 -0.01 3.43 16 Total: -1.00 -71.86 263.50 1.82 -70.04 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 1.12 Total: 14.57 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: 4.94 Total: 17.51 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -6.17 Total: -88.20 kcal Atomic # 8 Polarization: -54.42 SS G_CDS: -0.10 Total: -54.52 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.60 kcal Total: -71.86 1.82 -70.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259325860.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.666 kcal (2) G-P(sol) polarization free energy of solvation -71.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds