Wall clock time and date at job start Mon Mar 30 2020 02:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.47198 * 109.47550 * 2 1 4 4 N 2.60800 * 109.47340 * 0.02562 * 2 1 3 5 5 C 1.50695 * 109.47289 * 120.00430 * 2 1 3 6 6 H 1.08004 * 120.00247 * 115.17759 * 5 2 1 7 7 C 1.37883 * 119.99932 * 295.17900 * 5 2 1 8 8 N 1.31511 * 119.99661 * 0.02562 * 7 5 2 9 9 Si 1.86800 * 120.00047 * 179.72220 * 7 5 2 10 10 H 1.48494 * 109.47025 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47098 * 120.00144 * 9 7 5 12 12 H 1.48498 * 109.47429 * 239.99943 * 9 7 5 13 13 C 1.50703 * 109.46839 * 240.00284 * 2 1 3 14 14 C 1.38361 * 119.84767 * 124.96116 * 13 2 1 15 15 C 1.37952 * 120.14999 * 179.76314 * 14 13 2 16 16 C 1.39633 * 119.84511 * 0.53597 * 15 14 13 17 17 C 1.43200 * 120.14856 * 179.70305 * 16 15 14 18 18 N 6.84442 * 109.44148 * 240.02145 * 2 1 3 19 19 C 1.39632 * 119.69989 * 359.71662 * 16 15 14 20 20 C 1.37955 * 119.84445 * 0.02562 * 19 16 15 21 21 H 1.09009 * 109.46639 * 300.00162 * 1 2 3 22 22 H 1.08996 * 109.47250 * 59.99273 * 1 2 3 23 23 H 1.08991 * 109.47418 * 180.02562 * 1 2 3 24 24 H 0.97009 * 120.00103 * 180.02562 * 8 7 5 25 25 H 1.08002 * 119.92670 * 359.97438 * 14 13 2 26 26 H 1.07995 * 120.07538 * 180.24930 * 15 14 13 27 27 H 1.07995 * 120.07731 * 179.97438 * 19 16 15 28 28 H 1.08003 * 119.92112 * 179.97438 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0208 1.3878 0.0000 4 7 2.3994 2.4588 0.0011 5 6 2.0324 -0.7105 1.2304 6 1 2.5875 -1.6318 1.1331 7 6 1.7832 -0.1844 2.4803 8 7 1.1067 0.9372 2.5986 9 14 2.3992 -1.0691 4.0058 10 1 3.1217 -2.3029 3.6046 11 1 3.3205 -0.1785 4.7564 12 1 1.2458 -1.4288 4.8691 13 6 2.0323 -0.7104 -1.2305 14 6 2.9101 -0.0686 -2.0860 15 6 3.3777 -0.7148 -3.2117 16 6 2.9542 -2.0153 -3.4926 17 6 3.4304 -2.6898 -4.6626 18 7 3.8081 -3.2250 -5.5907 19 6 2.0640 -2.6551 -2.6277 20 6 1.6087 -1.9991 -1.5028 21 1 -0.3633 0.5139 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 0.9317 1.3076 3.4780 25 1 3.2328 0.9393 -1.8703 26 1 4.0660 -0.2142 -3.8764 27 1 1.7322 -3.6608 -2.8393 28 1 0.9198 -2.4926 -0.8331 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259539846.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:14 Heat of formation + Delta-G solvation = 57.695049 kcal Electronic energy + Delta-G solvation = -14245.643390 eV Core-core repulsion = 11839.937421 eV Total energy + Delta-G solvation = -2405.705969 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 226.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.67696 -38.21373 -37.05776 -35.45237 -33.56694 -31.89603 -30.53813 -27.31366 -25.41762 -23.77914 -22.60906 -19.75807 -19.35721 -17.63310 -16.75822 -16.07953 -15.53393 -15.41364 -15.04106 -14.76593 -14.38927 -14.30466 -13.87250 -13.54630 -13.36928 -13.28777 -13.05197 -12.95647 -12.70822 -12.52282 -12.28174 -12.14323 -11.73980 -11.46280 -11.10994 -10.59039 -9.80519 -9.50498 -8.16613 -6.34135 -0.04777 0.56992 1.48029 1.54178 1.63033 1.68274 2.04616 2.37119 2.41612 2.53474 2.95984 3.06068 3.15560 3.76381 4.06425 4.11187 4.31978 4.57404 4.71769 4.90473 4.99524 5.05428 5.23149 5.34095 5.45897 5.47568 5.67951 5.82435 5.93749 6.03226 6.14214 6.51633 6.71502 7.28743 7.38635 8.86299 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.033872 B = 0.007702 C = 0.006997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.434972 B = 3634.734561 C = 4000.884412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.175 3.825 3 C 0.280 3.720 4 N -0.550 5.550 5 C -0.516 4.516 6 H 0.087 0.913 7 C 0.026 3.974 8 N -0.904 5.904 9 Si 0.956 3.044 10 H -0.254 1.254 11 H -0.298 1.298 12 H -0.278 1.278 13 C -0.017 4.017 14 C -0.144 4.144 15 C -0.057 4.057 16 C -0.055 4.055 17 C 0.289 3.711 18 N -0.471 5.471 19 C -0.051 4.051 20 C -0.103 4.103 21 H 0.055 0.945 22 H 0.038 0.962 23 H 0.081 0.919 24 H 0.263 0.737 25 H 0.107 0.893 26 H 0.144 0.856 27 H 0.162 0.838 28 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.152 -7.868 -6.129 10.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.171 3.829 3 C -0.035 4.035 4 N -0.228 5.228 5 C -0.554 4.554 6 H 0.105 0.895 7 C -0.176 4.176 8 N -0.540 5.540 9 Si 0.782 3.218 10 H -0.177 1.177 11 H -0.226 1.226 12 H -0.203 1.203 13 C -0.019 4.019 14 C -0.163 4.163 15 C -0.078 4.078 16 C -0.059 4.059 17 C -0.025 4.025 18 N -0.147 5.147 19 C -0.071 4.071 20 C -0.121 4.121 21 H 0.074 0.926 22 H 0.057 0.943 23 H 0.100 0.900 24 H 0.073 0.927 25 H 0.125 0.875 26 H 0.162 0.838 27 H 0.179 0.821 28 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.073 -6.954 -7.440 10.184 hybrid contribution 0.130 0.237 1.632 1.654 sum 0.057 -6.716 -5.808 8.879 Atomic orbital electron populations 1.21738 0.92924 1.02684 1.00628 1.15332 0.94703 0.79923 0.92915 1.30280 0.90213 0.95043 0.87963 1.80844 1.13217 1.14618 1.14082 1.21245 1.36587 1.09250 0.88358 0.89528 1.25730 0.94496 0.95252 1.02166 1.69991 1.39263 1.20063 1.24697 0.85503 0.78014 0.78957 0.79290 1.17750 1.22550 1.20324 1.20158 0.93759 0.95105 0.92897 1.21020 0.99433 1.00212 0.95622 1.21124 0.97855 0.92625 0.96162 1.15943 1.03579 0.94457 0.91894 1.25771 0.92099 0.92246 0.92345 1.81238 1.10767 1.10301 1.12382 1.21384 0.93437 1.00357 0.91904 1.21053 1.00749 0.92979 0.97270 0.92567 0.94335 0.89977 0.92718 0.87532 0.83833 0.82092 0.82703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.54 8.00 71.98 0.58 -3.96 15 2 C 0.18 7.11 0.53 -55.48 -0.03 7.08 15 3 C 0.28 13.21 10.17 89.44 0.91 14.12 15 4 N -0.55 -27.89 18.46 20.01 0.37 -27.53 15 5 C -0.52 -22.85 7.75 25.60 0.20 -22.65 15 6 H 0.09 3.63 7.68 -2.91 -0.02 3.61 15 7 C 0.03 1.22 5.15 84.66 0.44 1.65 15 8 N -0.90 -46.57 10.51 21.45 0.23 -46.35 15 9 Si 0.96 38.50 29.54 68.60 2.03 40.52 15 10 H -0.25 -9.56 7.11 99.48 0.71 -8.85 15 11 H -0.30 -12.70 7.11 99.48 0.71 -11.99 15 12 H -0.28 -10.98 7.11 99.48 0.71 -10.27 15 13 C -0.02 -0.56 4.71 -19.81 -0.09 -0.65 15 14 C -0.14 -4.51 9.13 22.23 0.20 -4.30 15 15 C -0.06 -1.43 9.76 22.54 0.22 -1.21 15 16 C -0.06 -1.27 5.73 -21.36 -0.12 -1.39 15 17 C 0.29 7.14 15.33 88.33 1.35 8.49 15 18 N -0.47 -13.48 18.54 19.00 0.35 -13.13 15 19 C -0.05 -1.05 9.76 22.54 0.22 -0.83 15 20 C -0.10 -2.59 8.84 22.23 0.20 -2.40 15 21 H 0.06 2.47 6.46 -2.38 -0.02 2.46 15 22 H 0.04 1.30 8.14 -2.39 -0.02 1.28 15 23 H 0.08 2.58 7.10 -2.39 -0.02 2.56 15 24 H 0.26 13.32 8.31 -92.70 -0.77 12.55 15 25 H 0.11 3.75 6.43 -2.91 -0.02 3.73 15 26 H 0.14 2.98 8.06 -2.91 -0.02 2.96 15 27 H 0.16 2.32 8.06 -2.91 -0.02 2.30 15 28 H 0.16 3.47 7.26 -2.91 -0.02 3.45 15 Total: -1.00 -57.00 260.71 8.23 -48.77 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: 1.19 Total: 3.77 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 4.07 Total: -6.06 kcal Atomic # 7 Polarization: -87.95 SS G_CDS: 0.95 Total: -87.00 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.52 kcal Total: -57.00 8.23 -48.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259539846.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.468 kcal (2) G-P(sol) polarization free energy of solvation -57.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds