Wall clock time and date at job start Mon Mar 30 2020 03:16:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52996 * 109.47226 * 2 1
4 4 F 1.39899 * 109.47323 * 60.00198 * 3 2 1
5 5 F 1.39897 * 109.47107 * 299.99669 * 3 2 1
6 6 C 1.50705 * 109.46974 * 180.02562 * 3 2 1
7 7 C 1.38663 * 119.87350 * 270.29152 * 6 3 2
8 8 C 1.38609 * 120.49761 * 180.25710 * 7 6 3
9 9 C 1.37636 * 120.25144 * 359.45034 * 8 7 6
10 10 C 1.40702 * 119.74414 * 0.27080 * 9 8 7
11 11 C 1.41389 * 120.24759 * 179.97438 * 10 9 8
12 12 H 1.08002 * 120.00485 * 204.39220 * 11 10 9
13 13 C 1.39942 * 119.99857 * 24.38333 * 11 10 9
14 14 N 1.30830 * 119.99921 * 17.87213 * 13 11 10
15 15 Si 1.86807 * 120.00314 * 197.86702 * 13 11 10
16 16 H 1.48500 * 109.46633 * 0.02562 * 15 13 11
17 17 H 1.48504 * 109.46828 * 120.00062 * 15 13 11
18 18 H 1.48497 * 109.47200 * 240.00400 * 15 13 11
19 19 C 1.37598 * 119.87574 * 90.00222 * 6 3 2
20 20 H 1.09002 * 109.47061 * 300.00343 * 1 2 3
21 21 H 1.09001 * 109.46932 * 59.99726 * 1 2 3
22 22 H 1.08992 * 109.47040 * 180.02562 * 1 2 3
23 23 H 1.09002 * 109.47061 * 239.99657 * 2 1 3
24 24 H 1.08998 * 109.46977 * 119.99745 * 2 1 3
25 25 H 1.08001 * 119.74681 * 0.02562 * 7 6 3
26 26 H 1.08003 * 119.87315 * 179.72263 * 8 7 6
27 27 H 1.07999 * 120.13059 * 180.25214 * 9 8 7
28 28 H 0.97008 * 119.99884 * 179.97438 * 14 13 11
29 29 H 1.07997 * 120.12829 * 0.03806 * 19 6 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 9 1.5738 2.1020 1.1423
5 9 1.5738 2.1019 -1.1423
6 6 3.5471 1.4424 -0.0006
7 6 4.2383 1.4361 1.2014
8 6 5.6243 1.4413 1.2160
9 6 6.3301 1.4414 0.0344
10 6 5.6393 1.4420 -1.1914
11 6 6.3537 1.4427 -2.4115
12 1 5.8915 1.8294 -3.3078
13 6 7.6599 0.9425 -2.4578
14 7 8.0985 0.1688 -1.4982
15 14 8.7772 1.3792 -3.8898
16 1 8.0479 2.2623 -4.8351
17 1 9.9805 2.0855 -3.3812
18 1 9.1914 0.1375 -4.5910
19 6 4.2320 1.4426 -1.1941
20 1 -0.3633 0.5139 0.8900
21 1 -0.3633 0.5139 -0.8900
22 1 -0.3633 -1.0276 0.0005
23 1 1.8934 -0.5139 -0.8900
24 1 1.8933 -0.5138 0.8900
25 1 3.6925 1.4308 2.1334
26 1 6.1524 1.4408 2.1581
27 1 7.4100 1.4414 0.0480
28 1 9.0038 -0.1782 -1.5305
29 1 3.6917 1.4434 -2.1291
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259576719.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:16:59
Heat of formation + Delta-G solvation = -101.242964 kcal
Electronic energy + Delta-G solvation = -15351.444073 eV
Core-core repulsion = 12488.156848 eV
Total energy + Delta-G solvation = -2863.287225 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 226.086 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-48.37914 -46.36057 -37.64151 -34.12755 -33.20767 -30.06149 -29.93741 -25.58627
-25.18198 -21.79191 -20.85823 -20.17400 -17.67073 -16.76643 -15.98904 -15.78950
-15.09802 -14.52247 -14.13797 -13.39816 -13.32208 -12.86122 -12.75772 -12.67387
-12.53450 -12.32154 -11.70435 -11.40861 -11.26931 -11.07781 -10.97791 -10.82347
-10.61643 -10.43188 -9.65749 -9.50625 -9.24351 -7.63664 -7.52857 -6.84861
-4.44938 2.62498 2.74604 3.04119 3.09543 3.13249 3.88165 4.32448
4.47496 4.90001 5.01909 5.06322 5.56046 5.57319 5.59188 5.87210
6.01238 6.14466 6.29865 6.33488 6.38217 6.82328 6.93721 7.09227
7.20316 7.38889 7.69383 7.90637 7.92921 8.12074 8.51721 8.78529
8.83643 10.10507
Molecular weight = 226.09amu
Principal moments of inertia in cm(-1)
A = 0.042771 B = 0.007330 C = 0.006783
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 654.498048 B = 3819.176936 C = 4127.016855
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C -0.154 4.154
3 C 0.339 3.661
4 F -0.205 7.205
5 F -0.203 7.203
6 C -0.130 4.130
7 C -0.212 4.212
8 C -0.106 4.106
9 C -0.151 4.151
10 C 0.107 3.893
11 C -0.461 4.461
12 H 0.080 0.920
13 C 0.076 3.924
14 N -0.793 5.793
15 Si 0.909 3.091
16 H -0.259 1.259
17 H -0.271 1.271
18 H -0.274 1.274
19 C -0.193 4.193
20 H 0.059 0.941
21 H 0.060 0.940
22 H 0.062 0.938
23 H 0.093 0.907
24 H 0.091 0.909
25 H 0.095 0.905
26 H 0.094 0.906
27 H 0.122 0.878
28 H 0.281 0.719
29 H 0.100 0.900
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.146 -0.881 1.529 6.395
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C -0.192 4.192
3 C 0.304 3.696
4 F -0.186 7.186
5 F -0.184 7.184
6 C -0.131 4.131
7 C -0.231 4.231
8 C -0.125 4.125
9 C -0.170 4.170
10 C 0.104 3.896
11 C -0.490 4.490
12 H 0.098 0.902
13 C -0.142 4.142
14 N -0.418 5.418
15 Si 0.733 3.267
16 H -0.183 1.183
17 H -0.196 1.196
18 H -0.199 1.199
19 C -0.212 4.212
20 H 0.078 0.922
21 H 0.079 0.921
22 H 0.081 0.919
23 H 0.112 0.888
24 H 0.110 0.890
25 H 0.113 0.887
26 H 0.112 0.888
27 H 0.139 0.861
28 H 0.092 0.908
29 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges -5.968 -0.993 1.589 6.256
hybrid contribution 0.527 0.206 -0.560 0.796
sum -5.441 -0.787 1.029 5.593
Atomic orbital electron populations
1.21781 0.94674 1.02253 1.02628 1.22473 0.97098 0.93972 1.05689
1.19598 0.91508 0.87853 0.70690 1.92925 1.90347 1.83516 1.51849
1.92939 1.90286 1.83446 1.51723 1.19612 0.90286 1.07234 0.95927
1.20093 0.94192 1.13838 0.94982 1.20658 0.93371 1.01248 0.97211
1.21458 0.99983 1.04224 0.91364 1.17563 0.90350 0.88175 0.93483
1.19608 0.97513 1.35999 0.95867 0.90178 1.25919 0.98477 0.92469
0.97323 1.69822 1.17765 1.22296 1.31941 0.86248 0.79866 0.79334
0.81240 1.18301 1.19644 1.19938 1.20757 0.94522 1.11093 0.94873
0.92182 0.92079 0.91869 0.88822 0.89044 0.88717 0.88802 0.86062
0.90793 0.88140
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.05 9.67 37.16 0.36 -1.69 15
2 C -0.15 -2.46 5.51 -26.73 -0.15 -2.61 15
3 C 0.34 6.64 1.85 -27.88 -0.05 6.58 15
4 F -0.21 -4.02 15.69 2.25 0.04 -3.98 15
5 F -0.20 -4.10 15.67 2.25 0.04 -4.07 15
6 C -0.13 -2.94 4.98 -104.70 -0.52 -3.46 15
7 C -0.21 -4.76 9.41 -39.29 -0.37 -5.13 15
8 C -0.11 -2.47 10.02 -39.66 -0.40 -2.87 15
9 C -0.15 -3.86 8.70 -38.87 -0.34 -4.20 15
10 C 0.11 2.82 5.58 -106.82 -0.60 2.22 15
11 C -0.46 -12.05 9.05 -37.75 -0.34 -12.40 15
12 H 0.08 2.03 7.91 -52.49 -0.41 1.61 15
13 C 0.08 1.87 5.14 -17.34 -0.09 1.78 15
14 N -0.79 -20.01 10.95 55.55 0.61 -19.40 15
15 Si 0.91 18.32 29.60 -169.99 -5.03 13.29 15
16 H -0.26 -5.21 7.11 56.52 0.40 -4.81 15
17 H -0.27 -5.38 7.11 56.52 0.40 -4.98 15
18 H -0.27 -5.43 7.11 56.52 0.40 -5.02 15
19 C -0.19 -4.75 9.14 -38.87 -0.36 -5.10 15
20 H 0.06 0.77 7.80 -51.93 -0.41 0.37 15
21 H 0.06 0.80 7.80 -51.93 -0.41 0.40 15
22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15
23 H 0.09 1.48 8.14 -51.93 -0.42 1.06 15
24 H 0.09 1.39 8.14 -51.93 -0.42 0.97 15
25 H 0.09 1.94 7.60 -52.49 -0.40 1.54 15
26 H 0.09 1.92 8.06 -52.48 -0.42 1.50 15
27 H 0.12 3.17 6.15 -52.49 -0.32 2.85 15
28 H 0.28 6.41 8.30 -40.82 -0.34 6.07 15
29 H 0.10 2.39 7.59 -52.49 -0.40 1.99 15
LS Contribution 257.90 15.07 3.89 3.89
Total: -1.00 -26.84 257.90 -6.48 -33.32
By element:
Atomic # 1 Polarization: 6.99 SS G_CDS: -3.17 Total: 3.82 kcal
Atomic # 6 Polarization: -24.02 SS G_CDS: -2.85 Total: -26.87 kcal
Atomic # 7 Polarization: -20.01 SS G_CDS: 0.61 Total: -19.40 kcal
Atomic # 9 Polarization: -8.12 SS G_CDS: 0.07 Total: -8.05 kcal
Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal
Total LS contribution 3.89 Total: 3.89 kcal
Total: -26.84 -6.48 -33.32 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259576719.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -67.919 kcal
(2) G-P(sol) polarization free energy of solvation -26.840 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.759 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.484 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.324 kcal
(6) G-S(sol) free energy of system = (1) + (5) -101.243 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds