Wall clock time and date at job start Mon Mar 30 2020 03:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47226 * 2 1 4 4 F 1.39899 * 109.47323 * 60.00198 * 3 2 1 5 5 F 1.39897 * 109.47107 * 299.99669 * 3 2 1 6 6 C 1.50705 * 109.46974 * 180.02562 * 3 2 1 7 7 C 1.38663 * 119.87350 * 270.29152 * 6 3 2 8 8 C 1.38609 * 120.49761 * 180.25710 * 7 6 3 9 9 C 1.37636 * 120.25144 * 359.45034 * 8 7 6 10 10 C 1.40702 * 119.74414 * 0.27080 * 9 8 7 11 11 C 1.41389 * 120.24759 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00485 * 204.39220 * 11 10 9 13 13 C 1.39942 * 119.99857 * 24.38333 * 11 10 9 14 14 N 1.30830 * 119.99921 * 17.87213 * 13 11 10 15 15 Si 1.86807 * 120.00314 * 197.86702 * 13 11 10 16 16 H 1.48500 * 109.46633 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46828 * 120.00062 * 15 13 11 18 18 H 1.48497 * 109.47200 * 240.00400 * 15 13 11 19 19 C 1.37598 * 119.87574 * 90.00222 * 6 3 2 20 20 H 1.09002 * 109.47061 * 300.00343 * 1 2 3 21 21 H 1.09001 * 109.46932 * 59.99726 * 1 2 3 22 22 H 1.08992 * 109.47040 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47061 * 239.99657 * 2 1 3 24 24 H 1.08998 * 109.46977 * 119.99745 * 2 1 3 25 25 H 1.08001 * 119.74681 * 0.02562 * 7 6 3 26 26 H 1.08003 * 119.87315 * 179.72263 * 8 7 6 27 27 H 1.07999 * 120.13059 * 180.25214 * 9 8 7 28 28 H 0.97008 * 119.99884 * 179.97438 * 14 13 11 29 29 H 1.07997 * 120.12829 * 0.03806 * 19 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 9 1.5738 2.1020 1.1423 5 9 1.5738 2.1019 -1.1423 6 6 3.5471 1.4424 -0.0006 7 6 4.2383 1.4361 1.2014 8 6 5.6243 1.4413 1.2160 9 6 6.3301 1.4414 0.0344 10 6 5.6393 1.4420 -1.1914 11 6 6.3537 1.4427 -2.4115 12 1 5.8915 1.8294 -3.3078 13 6 7.6599 0.9425 -2.4578 14 7 8.0985 0.1688 -1.4982 15 14 8.7772 1.3792 -3.8898 16 1 8.0479 2.2623 -4.8351 17 1 9.9805 2.0855 -3.3812 18 1 9.1914 0.1375 -4.5910 19 6 4.2320 1.4426 -1.1941 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.6925 1.4308 2.1334 26 1 6.1524 1.4408 2.1581 27 1 7.4100 1.4414 0.0480 28 1 9.0038 -0.1782 -1.5305 29 1 3.6917 1.4434 -2.1291 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259576719.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:59 Heat of formation + Delta-G solvation = -101.242964 kcal Electronic energy + Delta-G solvation = -15351.444073 eV Core-core repulsion = 12488.156848 eV Total energy + Delta-G solvation = -2863.287225 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.37914 -46.36057 -37.64151 -34.12755 -33.20767 -30.06149 -29.93741 -25.58627 -25.18198 -21.79191 -20.85823 -20.17400 -17.67073 -16.76643 -15.98904 -15.78950 -15.09802 -14.52247 -14.13797 -13.39816 -13.32208 -12.86122 -12.75772 -12.67387 -12.53450 -12.32154 -11.70435 -11.40861 -11.26931 -11.07781 -10.97791 -10.82347 -10.61643 -10.43188 -9.65749 -9.50625 -9.24351 -7.63664 -7.52857 -6.84861 -4.44938 2.62498 2.74604 3.04119 3.09543 3.13249 3.88165 4.32448 4.47496 4.90001 5.01909 5.06322 5.56046 5.57319 5.59188 5.87210 6.01238 6.14466 6.29865 6.33488 6.38217 6.82328 6.93721 7.09227 7.20316 7.38889 7.69383 7.90637 7.92921 8.12074 8.51721 8.78529 8.83643 10.10507 Molecular weight = 226.09amu Principal moments of inertia in cm(-1) A = 0.042771 B = 0.007330 C = 0.006783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.498048 B = 3819.176936 C = 4127.016855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.154 4.154 3 C 0.339 3.661 4 F -0.205 7.205 5 F -0.203 7.203 6 C -0.130 4.130 7 C -0.212 4.212 8 C -0.106 4.106 9 C -0.151 4.151 10 C 0.107 3.893 11 C -0.461 4.461 12 H 0.080 0.920 13 C 0.076 3.924 14 N -0.793 5.793 15 Si 0.909 3.091 16 H -0.259 1.259 17 H -0.271 1.271 18 H -0.274 1.274 19 C -0.193 4.193 20 H 0.059 0.941 21 H 0.060 0.940 22 H 0.062 0.938 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.122 0.878 28 H 0.281 0.719 29 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.146 -0.881 1.529 6.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.192 4.192 3 C 0.304 3.696 4 F -0.186 7.186 5 F -0.184 7.184 6 C -0.131 4.131 7 C -0.231 4.231 8 C -0.125 4.125 9 C -0.170 4.170 10 C 0.104 3.896 11 C -0.490 4.490 12 H 0.098 0.902 13 C -0.142 4.142 14 N -0.418 5.418 15 Si 0.733 3.267 16 H -0.183 1.183 17 H -0.196 1.196 18 H -0.199 1.199 19 C -0.212 4.212 20 H 0.078 0.922 21 H 0.079 0.921 22 H 0.081 0.919 23 H 0.112 0.888 24 H 0.110 0.890 25 H 0.113 0.887 26 H 0.112 0.888 27 H 0.139 0.861 28 H 0.092 0.908 29 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.968 -0.993 1.589 6.256 hybrid contribution 0.527 0.206 -0.560 0.796 sum -5.441 -0.787 1.029 5.593 Atomic orbital electron populations 1.21781 0.94674 1.02253 1.02628 1.22473 0.97098 0.93972 1.05689 1.19598 0.91508 0.87853 0.70690 1.92925 1.90347 1.83516 1.51849 1.92939 1.90286 1.83446 1.51723 1.19612 0.90286 1.07234 0.95927 1.20093 0.94192 1.13838 0.94982 1.20658 0.93371 1.01248 0.97211 1.21458 0.99983 1.04224 0.91364 1.17563 0.90350 0.88175 0.93483 1.19608 0.97513 1.35999 0.95867 0.90178 1.25919 0.98477 0.92469 0.97323 1.69822 1.17765 1.22296 1.31941 0.86248 0.79866 0.79334 0.81240 1.18301 1.19644 1.19938 1.20757 0.94522 1.11093 0.94873 0.92182 0.92079 0.91869 0.88822 0.89044 0.88717 0.88802 0.86062 0.90793 0.88140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.67 37.16 0.36 -1.69 15 2 C -0.15 -2.46 5.51 -26.73 -0.15 -2.61 15 3 C 0.34 6.64 1.85 -27.88 -0.05 6.58 15 4 F -0.21 -4.02 15.69 2.25 0.04 -3.98 15 5 F -0.20 -4.10 15.67 2.25 0.04 -4.07 15 6 C -0.13 -2.94 4.98 -104.70 -0.52 -3.46 15 7 C -0.21 -4.76 9.41 -39.29 -0.37 -5.13 15 8 C -0.11 -2.47 10.02 -39.66 -0.40 -2.87 15 9 C -0.15 -3.86 8.70 -38.87 -0.34 -4.20 15 10 C 0.11 2.82 5.58 -106.82 -0.60 2.22 15 11 C -0.46 -12.05 9.05 -37.75 -0.34 -12.40 15 12 H 0.08 2.03 7.91 -52.49 -0.41 1.61 15 13 C 0.08 1.87 5.14 -17.34 -0.09 1.78 15 14 N -0.79 -20.01 10.95 55.55 0.61 -19.40 15 15 Si 0.91 18.32 29.60 -169.99 -5.03 13.29 15 16 H -0.26 -5.21 7.11 56.52 0.40 -4.81 15 17 H -0.27 -5.38 7.11 56.52 0.40 -4.98 15 18 H -0.27 -5.43 7.11 56.52 0.40 -5.02 15 19 C -0.19 -4.75 9.14 -38.87 -0.36 -5.10 15 20 H 0.06 0.77 7.80 -51.93 -0.41 0.37 15 21 H 0.06 0.80 7.80 -51.93 -0.41 0.40 15 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 23 H 0.09 1.48 8.14 -51.93 -0.42 1.06 15 24 H 0.09 1.39 8.14 -51.93 -0.42 0.97 15 25 H 0.09 1.94 7.60 -52.49 -0.40 1.54 15 26 H 0.09 1.92 8.06 -52.48 -0.42 1.50 15 27 H 0.12 3.17 6.15 -52.49 -0.32 2.85 15 28 H 0.28 6.41 8.30 -40.82 -0.34 6.07 15 29 H 0.10 2.39 7.59 -52.49 -0.40 1.99 15 LS Contribution 257.90 15.07 3.89 3.89 Total: -1.00 -26.84 257.90 -6.48 -33.32 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -3.17 Total: 3.82 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: -2.85 Total: -26.87 kcal Atomic # 7 Polarization: -20.01 SS G_CDS: 0.61 Total: -19.40 kcal Atomic # 9 Polarization: -8.12 SS G_CDS: 0.07 Total: -8.05 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -26.84 -6.48 -33.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259576719.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.919 kcal (2) G-P(sol) polarization free energy of solvation -26.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds