Wall clock time and date at job start Mon Mar 30 2020 03:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47226 * 2 1 4 4 F 1.39899 * 109.47323 * 60.00198 * 3 2 1 5 5 F 1.39897 * 109.47107 * 299.99669 * 3 2 1 6 6 C 1.50705 * 109.46974 * 180.02562 * 3 2 1 7 7 C 1.38663 * 119.87350 * 270.29152 * 6 3 2 8 8 C 1.38609 * 120.49761 * 180.25710 * 7 6 3 9 9 C 1.37636 * 120.25144 * 359.45034 * 8 7 6 10 10 C 1.40702 * 119.74414 * 0.27080 * 9 8 7 11 11 C 1.41389 * 120.24759 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00485 * 204.39220 * 11 10 9 13 13 C 1.39942 * 119.99857 * 24.38333 * 11 10 9 14 14 N 1.30830 * 119.99921 * 17.87213 * 13 11 10 15 15 Si 1.86807 * 120.00314 * 197.86702 * 13 11 10 16 16 H 1.48500 * 109.46633 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46828 * 120.00062 * 15 13 11 18 18 H 1.48497 * 109.47200 * 240.00400 * 15 13 11 19 19 C 1.37598 * 119.87574 * 90.00222 * 6 3 2 20 20 H 1.09002 * 109.47061 * 300.00343 * 1 2 3 21 21 H 1.09001 * 109.46932 * 59.99726 * 1 2 3 22 22 H 1.08992 * 109.47040 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47061 * 239.99657 * 2 1 3 24 24 H 1.08998 * 109.46977 * 119.99745 * 2 1 3 25 25 H 1.08001 * 119.74681 * 0.02562 * 7 6 3 26 26 H 1.08003 * 119.87315 * 179.72263 * 8 7 6 27 27 H 1.07999 * 120.13059 * 180.25214 * 9 8 7 28 28 H 0.97008 * 119.99884 * 179.97438 * 14 13 11 29 29 H 1.07997 * 120.12829 * 0.03806 * 19 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 9 1.5738 2.1020 1.1423 5 9 1.5738 2.1019 -1.1423 6 6 3.5471 1.4424 -0.0006 7 6 4.2383 1.4361 1.2014 8 6 5.6243 1.4413 1.2160 9 6 6.3301 1.4414 0.0344 10 6 5.6393 1.4420 -1.1914 11 6 6.3537 1.4427 -2.4115 12 1 5.8915 1.8294 -3.3078 13 6 7.6599 0.9425 -2.4578 14 7 8.0985 0.1688 -1.4982 15 14 8.7772 1.3792 -3.8898 16 1 8.0479 2.2623 -4.8351 17 1 9.9805 2.0855 -3.3812 18 1 9.1914 0.1375 -4.5910 19 6 4.2320 1.4426 -1.1941 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.6925 1.4308 2.1334 26 1 6.1524 1.4408 2.1581 27 1 7.4100 1.4414 0.0480 28 1 9.0038 -0.1782 -1.5305 29 1 3.6917 1.4434 -2.1291 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259576719.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:59 Heat of formation + Delta-G solvation = -113.636450 kcal Electronic energy + Delta-G solvation = -15351.981495 eV Core-core repulsion = 12488.156848 eV Total energy + Delta-G solvation = -2863.824647 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.086 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.95325 -47.93915 -39.49643 -35.87497 -34.64511 -31.84926 -31.73906 -27.36410 -26.79908 -23.24466 -22.72436 -21.87672 -19.47073 -18.33713 -17.70323 -17.38058 -16.81690 -16.37130 -15.51565 -15.11683 -15.05653 -14.48777 -14.29369 -14.16018 -13.93359 -13.80946 -13.50638 -13.01492 -12.92031 -12.70177 -12.56449 -12.27104 -12.10857 -12.04247 -11.45607 -11.29689 -11.07485 -9.51945 -9.42657 -8.69788 -6.41483 0.78339 0.90114 1.38580 1.47809 1.53743 2.19547 2.62501 2.83824 3.33433 3.48114 3.60618 3.83944 4.27492 4.34040 4.46099 4.58711 4.69968 4.93762 4.94191 5.00835 5.03379 5.20335 5.26426 5.34633 5.51416 5.83139 5.99357 6.01985 6.22335 6.58897 6.85959 6.91000 8.28236 Molecular weight = 226.09amu Principal moments of inertia in cm(-1) A = 0.042771 B = 0.007330 C = 0.006783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.498048 B = 3819.176936 C = 4127.016855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.150 4.150 3 C 0.337 3.663 4 F -0.204 7.204 5 F -0.209 7.209 6 C -0.132 4.132 7 C -0.212 4.212 8 C -0.106 4.106 9 C -0.175 4.175 10 C 0.079 3.921 11 C -0.497 4.497 12 H 0.075 0.925 13 C 0.038 3.962 14 N -0.821 5.821 15 Si 0.983 3.017 16 H -0.260 1.260 17 H -0.263 1.263 18 H -0.264 1.264 19 C -0.211 4.211 20 H 0.063 0.937 21 H 0.057 0.943 22 H 0.090 0.910 23 H 0.091 0.909 24 H 0.101 0.899 25 H 0.120 0.880 26 H 0.122 0.878 27 H 0.109 0.891 28 H 0.291 0.709 29 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.615 -1.249 1.828 6.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.188 4.188 3 C 0.301 3.699 4 F -0.185 7.185 5 F -0.190 7.190 6 C -0.132 4.132 7 C -0.231 4.231 8 C -0.124 4.124 9 C -0.195 4.195 10 C 0.076 3.924 11 C -0.526 4.526 12 H 0.093 0.907 13 C -0.177 4.177 14 N -0.446 5.446 15 Si 0.803 3.197 16 H -0.184 1.184 17 H -0.187 1.187 18 H -0.188 1.188 19 C -0.231 4.231 20 H 0.082 0.918 21 H 0.077 0.923 22 H 0.109 0.891 23 H 0.110 0.890 24 H 0.119 0.881 25 H 0.138 0.862 26 H 0.139 0.861 27 H 0.127 0.873 28 H 0.102 0.898 29 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.453 -1.364 1.904 6.865 hybrid contribution 0.623 0.324 -0.569 0.904 sum -5.830 -1.040 1.335 6.071 Atomic orbital electron populations 1.21777 0.92207 1.04115 1.02686 1.22491 0.99216 0.91044 1.06076 1.19752 0.89719 0.89851 0.70530 1.92925 1.90103 1.83755 1.51684 1.92927 1.90130 1.83821 1.52110 1.19970 0.92471 1.05474 0.95322 1.20426 0.94109 1.12604 0.95938 1.20974 0.93991 0.99866 0.97558 1.21448 0.99584 1.06269 0.92187 1.17919 0.91404 0.88896 0.94149 1.19839 0.99138 1.37767 0.95883 0.90668 1.26740 0.99194 0.91658 1.00141 1.69853 1.18605 1.22575 1.33583 0.85148 0.77631 0.79254 0.77635 1.18377 1.18726 1.18840 1.20837 0.94197 1.12265 0.95772 0.91817 0.92342 0.89135 0.89049 0.88079 0.86185 0.86054 0.87338 0.89845 0.88351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.67 71.98 0.70 -2.83 15 2 C -0.15 -4.48 5.51 30.59 0.17 -4.32 15 3 C 0.34 12.71 1.85 29.85 0.06 12.76 15 4 F -0.20 -7.53 15.69 44.97 0.71 -6.83 15 5 F -0.21 -8.28 15.67 44.97 0.70 -7.57 15 6 C -0.13 -5.88 4.98 -19.91 -0.10 -5.98 15 7 C -0.21 -9.20 9.41 22.46 0.21 -8.99 15 8 C -0.11 -4.83 10.02 22.22 0.22 -4.60 15 9 C -0.18 -9.13 8.70 22.73 0.20 -8.94 15 10 C 0.08 4.26 5.58 -21.29 -0.12 4.14 15 11 C -0.50 -26.78 9.05 23.46 0.21 -26.57 15 12 H 0.08 3.95 7.91 -2.91 -0.02 3.93 15 13 C 0.04 1.90 5.14 85.25 0.44 2.34 15 14 N -0.82 -41.88 10.95 21.83 0.24 -41.65 15 15 Si 0.98 37.58 29.60 68.60 2.03 39.61 15 16 H -0.26 -9.87 7.11 99.48 0.71 -9.16 15 17 H -0.26 -9.62 7.11 99.48 0.71 -8.91 15 18 H -0.26 -9.59 7.11 99.48 0.71 -8.88 15 19 C -0.21 -10.58 9.14 22.73 0.21 -10.37 15 20 H 0.06 1.45 7.80 -2.39 -0.02 1.43 15 21 H 0.06 1.40 7.80 -2.39 -0.02 1.38 15 22 H 0.09 1.64 8.14 -2.39 -0.02 1.62 15 23 H 0.09 2.77 8.14 -2.39 -0.02 2.75 15 24 H 0.10 2.81 8.14 -2.39 -0.02 2.79 15 25 H 0.12 4.58 7.60 -2.91 -0.02 4.56 15 26 H 0.12 4.75 8.06 -2.91 -0.02 4.73 15 27 H 0.11 5.83 6.15 -2.91 -0.02 5.81 15 28 H 0.29 13.27 8.30 -92.70 -0.77 12.50 15 29 H 0.10 4.82 7.59 -2.91 -0.02 4.80 15 Total: -1.00 -57.45 257.90 7.02 -50.43 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 1.15 Total: 19.36 kcal Atomic # 6 Polarization: -55.55 SS G_CDS: 2.19 Total: -53.36 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: 0.24 Total: -41.65 kcal Atomic # 9 Polarization: -15.81 SS G_CDS: 1.41 Total: -14.40 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Total: -57.45 7.02 -50.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259576719.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.203 kcal (2) G-P(sol) polarization free energy of solvation -57.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds