Wall clock time and date at job start Mon Mar 30 2020 03:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46903 * 110.99675 * 2 1 4 4 C 1.46895 * 111.00122 * 123.95143 * 2 1 3 5 5 H 1.09003 * 109.47251 * 193.05722 * 4 2 1 6 6 C 1.52998 * 109.47279 * 313.06407 * 4 2 1 7 7 C 1.50703 * 109.46798 * 288.17811 * 6 4 2 8 8 H 1.08006 * 119.99962 * 353.84040 * 7 6 4 9 9 C 1.37877 * 120.00058 * 173.57434 * 7 6 4 10 10 N 1.31517 * 119.99961 * 0.26969 * 9 7 6 11 11 Si 1.86802 * 119.99904 * 180.27604 * 9 7 6 12 12 H 1.48502 * 109.47282 * 89.99706 * 11 9 7 13 13 H 1.48502 * 109.46831 * 209.99447 * 11 9 7 14 14 H 1.48500 * 109.47038 * 329.99273 * 11 9 7 15 15 C 1.50708 * 109.47154 * 73.06023 * 4 2 1 16 16 C 1.33642 * 122.74593 * 9.93500 * 15 4 2 17 17 S 1.76195 * 107.92236 * 179.97438 * 16 15 4 18 18 C 1.70980 * 90.28418 * 0.27917 * 17 16 15 19 19 N 1.29022 * 110.16426 * 359.83685 * 18 17 16 20 20 H 1.09001 * 109.47464 * 303.50101 * 1 2 3 21 21 H 1.08998 * 109.47239 * 63.51107 * 1 2 3 22 22 H 1.09007 * 109.46596 * 183.50063 * 1 2 3 23 23 H 1.09000 * 109.47147 * 174.57008 * 3 2 1 24 24 H 1.08997 * 109.47034 * 294.57302 * 3 2 1 25 25 H 1.08998 * 109.47144 * 54.56924 * 3 2 1 26 26 H 1.09001 * 109.47519 * 168.18156 * 6 4 2 27 27 H 1.08995 * 109.47531 * 48.17790 * 6 4 2 28 28 H 0.97001 * 119.99733 * 180.02562 * 10 9 7 29 29 H 1.08001 * 126.03967 * 0.04245 * 16 15 4 30 30 H 1.07996 * 124.91789 * 179.83999 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 1 3.0603 -0.5624 1.2510 6 6 1.2588 -0.3548 2.4139 7 6 1.6937 1.0295 2.8212 8 1 2.4932 1.5229 2.2884 9 6 1.0673 1.6682 3.8703 10 7 0.0938 1.0673 4.5191 11 14 1.6013 3.3870 4.3701 12 1 0.8112 4.3907 3.6126 13 1 1.3722 3.5729 5.8256 14 1 3.0447 3.5639 4.0696 15 6 1.7890 -2.2382 0.8906 16 6 1.3887 -2.7243 -0.2882 17 16 1.2769 -4.4766 -0.1424 18 6 1.7716 -4.3807 1.4915 19 7 1.9822 -3.1512 1.8210 20 1 -0.3634 0.5672 0.8569 21 1 -0.3633 0.4584 -0.9198 22 1 -0.3633 -1.0258 0.0628 23 1 3.0807 1.3441 0.0972 24 1 1.7266 1.8638 -0.9346 25 1 1.5694 1.9242 0.8373 26 1 1.4938 -1.0590 3.2120 27 1 0.1843 -0.3588 2.2307 28 1 -0.3471 1.5168 5.2569 29 1 1.1730 -2.1454 -1.1741 30 1 1.8907 -5.2268 2.1520 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259742938.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:42 Heat of formation + Delta-G solvation = 58.746400 kcal Electronic energy + Delta-G solvation = -13906.753642 eV Core-core repulsion = 11636.537215 eV Total energy + Delta-G solvation = -2270.216428 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.65536 -36.98224 -32.72516 -30.56545 -29.00446 -26.86143 -25.87256 -24.44206 -22.32263 -20.46901 -18.72686 -17.33365 -16.41094 -15.49805 -14.87772 -14.48418 -14.09426 -13.78718 -13.63421 -12.76113 -12.54604 -12.25548 -11.63335 -11.19304 -11.13019 -10.94874 -10.82458 -10.81167 -10.56973 -10.12869 -9.88004 -9.21458 -9.08078 -9.00867 -8.41140 -8.26528 -7.36514 -6.03164 -4.04034 1.17470 1.80574 2.12476 3.27901 3.34147 3.35648 3.38648 4.41008 4.44046 5.04080 5.32133 5.62226 5.79023 5.90005 6.01113 6.12410 6.27230 6.42999 6.46690 6.61093 6.68604 6.82541 6.98181 7.49950 7.61692 7.78044 7.93982 8.03122 8.27580 8.34693 8.99904 9.56853 11.07667 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.040035 B = 0.008116 C = 0.007281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.218836 B = 3449.344669 C = 3844.707106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.537 5.537 3 C 0.018 3.982 4 C 0.152 3.848 5 H 0.085 0.915 6 C 0.001 3.999 7 C -0.521 4.521 8 H 0.062 0.938 9 C 0.059 3.941 10 N -0.890 5.890 11 Si 0.887 3.113 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.273 1.273 15 C 0.086 3.914 16 C -0.230 4.230 17 S 0.054 5.946 18 C 0.019 3.981 19 N -0.451 5.451 20 H 0.052 0.948 21 H 0.051 0.949 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.046 0.954 25 H 0.072 0.928 26 H 0.029 0.971 27 H 0.030 0.970 28 H 0.260 0.740 29 H 0.182 0.818 30 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.422 -7.286 -9.416 11.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.260 5.260 3 C -0.130 4.130 4 C 0.041 3.959 5 H 0.103 0.897 6 C -0.037 4.037 7 C -0.559 4.559 8 H 0.080 0.920 9 C -0.142 4.142 10 N -0.529 5.529 11 Si 0.715 3.285 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.198 1.198 15 C -0.044 4.044 16 C -0.369 4.369 17 S 0.304 5.696 18 C -0.280 4.280 19 N -0.164 5.164 20 H 0.070 0.930 21 H 0.070 0.930 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.090 0.910 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.199 0.801 30 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 1.369 -8.200 -9.802 12.853 hybrid contribution 0.029 2.072 1.324 2.459 sum 1.399 -6.128 -8.478 10.554 Atomic orbital electron populations 1.22412 0.88577 1.01331 1.00678 1.62224 1.07746 1.14241 1.41792 1.22626 0.99672 0.89475 1.01232 1.20353 1.00037 0.83625 0.91867 0.89704 1.19712 0.96244 0.96592 0.91179 1.21317 1.18502 1.00646 1.15473 0.91950 1.24993 0.95115 0.97815 0.96296 1.69978 1.23617 1.37539 1.21740 0.86665 0.79081 0.84862 0.77870 1.20697 1.21226 1.19791 1.20618 0.98773 0.97467 0.87577 1.26879 1.11636 0.94103 1.04246 1.83755 1.65195 1.07482 1.13185 1.28333 1.04258 0.98019 0.97394 1.66036 1.16447 0.99673 1.34217 0.92956 0.92987 0.92576 0.92675 0.93500 0.91003 0.95248 0.95173 0.93020 0.80071 0.79009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 7.95 60.07 0.48 0.82 16 2 N -0.54 -10.29 4.06 -244.58 -0.99 -11.28 16 3 C 0.02 0.33 8.29 60.07 0.50 0.83 16 4 C 0.15 3.27 2.43 -68.86 -0.17 3.10 16 5 H 0.09 1.89 7.74 -51.93 -0.40 1.49 16 6 C 0.00 0.03 4.02 -27.88 -0.11 -0.08 16 7 C -0.52 -14.10 7.00 -34.44 -0.24 -14.34 16 8 H 0.06 1.62 5.87 -52.48 -0.31 1.31 16 9 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 10 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 11 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 15 C 0.09 1.69 5.68 -84.22 -0.48 1.22 16 16 C -0.23 -3.80 9.18 29.12 0.27 -3.53 16 17 S 0.05 0.72 23.22 -107.50 -2.50 -1.78 16 18 C 0.02 0.29 12.23 51.58 0.63 0.92 16 19 N -0.45 -8.85 9.96 -11.89 -0.12 -8.97 16 20 H 0.05 1.14 6.42 -51.93 -0.33 0.81 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.06 1.03 6.37 -51.93 -0.33 0.70 16 23 H 0.05 0.98 7.85 -51.93 -0.41 0.58 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 1.54 5.32 -51.93 -0.28 1.26 16 26 H 0.03 0.84 7.65 -51.93 -0.40 0.45 16 27 H 0.03 0.83 5.75 -51.93 -0.30 0.53 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.18 2.81 7.19 -52.49 -0.38 2.43 16 30 H 0.19 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 256.45 15.07 3.86 3.86 Total: -1.00 -30.01 256.45 -6.79 -36.79 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -3.53 Total: 0.32 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 0.78 Total: -9.49 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: -0.38 Total: -45.97 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.50 Total: -1.78 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.01 -6.79 -36.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259742938.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.537 kcal (2) G-P(sol) polarization free energy of solvation -30.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds