Wall clock time and date at job start Mon Mar 30 2020 02:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46956 * 2 1 4 4 C 1.50698 * 109.46738 * 119.99827 * 2 1 3 5 5 N 1.29024 * 124.91848 * 120.00584 * 4 2 1 6 6 C 1.31777 * 117.13032 * 180.02562 * 5 4 2 7 7 C 1.50701 * 122.75299 * 179.97438 * 6 5 4 8 8 H 1.08995 * 109.47143 * 24.97504 * 7 6 5 9 9 N 1.46898 * 109.47018 * 144.97035 * 7 6 5 10 10 C 1.50698 * 109.47013 * 264.96836 * 7 6 5 11 11 H 1.07997 * 120.00183 * 0.02562 * 10 7 6 12 12 C 1.37877 * 120.00047 * 179.97438 * 10 7 6 13 13 N 1.31516 * 120.00056 * 0.02562 * 12 10 7 14 14 Si 1.86799 * 119.99993 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.46791 * 90.00547 * 14 12 10 16 16 H 1.48504 * 109.46947 * 210.00298 * 14 12 10 17 17 H 1.48496 * 109.47432 * 330.00431 * 14 12 10 18 18 C 1.33647 * 114.49749 * 359.97438 * 6 5 4 19 19 S 1.70986 * 124.91681 * 300.31058 * 4 2 1 20 20 H 1.08994 * 109.47385 * 300.00649 * 1 2 3 21 21 H 1.09006 * 109.46825 * 60.00171 * 1 2 3 22 22 H 1.08993 * 109.47591 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47180 * 239.99722 * 2 1 3 24 24 H 1.09001 * 109.47403 * 59.99858 * 3 2 1 25 25 H 1.09005 * 109.46999 * 179.97438 * 3 2 1 26 26 H 1.09003 * 109.46972 * 299.99135 * 3 2 1 27 27 H 1.00902 * 111.00602 * 60.00096 * 9 7 6 28 28 H 1.00901 * 111.00109 * 183.95206 * 9 7 6 29 29 H 0.96999 * 120.00194 * 179.97438 * 13 12 10 30 30 H 1.08002 * 126.03488 * 179.97438 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 7 2.7772 -1.7638 1.2228 6 6 3.1277 -2.2605 2.3919 7 6 3.9936 -3.4861 2.5306 8 1 4.6064 -3.6010 1.6366 9 7 4.8637 -3.3405 3.7052 10 6 3.1197 -4.7020 2.7005 11 1 2.0448 -4.5978 2.7069 12 6 3.6924 -5.9476 2.8466 13 7 5.0014 -6.0747 2.8383 14 14 2.6091 -7.4549 3.0564 15 1 2.2964 -8.0291 1.7231 16 1 3.3224 -8.4669 3.8763 17 1 1.3473 -7.0669 3.7366 18 6 2.6523 -1.5883 3.4447 19 16 1.6913 -0.2414 2.8390 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0276 0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 1.6766 1.9564 0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8901 27 1 4.3190 -3.2323 4.5477 28 1 5.4992 -4.1203 3.7834 29 1 5.4043 -6.9509 2.9415 30 1 2.8228 -1.8309 4.4832 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259755407.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:04 Heat of formation + Delta-G solvation = 4.057772 kcal Electronic energy + Delta-G solvation = -13408.384330 eV Core-core repulsion = 11135.796425 eV Total energy + Delta-G solvation = -2272.587904 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.82121 -37.13149 -35.82582 -33.32929 -30.06085 -28.31483 -28.04736 -26.31370 -24.17078 -21.56127 -20.41506 -18.66026 -18.54277 -16.83834 -16.54504 -15.93492 -15.60825 -15.23297 -14.72487 -14.32151 -13.91438 -13.70469 -13.56844 -13.12779 -12.95936 -12.81513 -12.63035 -12.50554 -12.15147 -11.97495 -11.88984 -11.58304 -10.77911 -10.44034 -10.21349 -9.52460 -9.24368 -8.19334 -6.44929 -0.04921 0.59247 0.88800 1.34253 1.35363 1.45970 2.04906 2.35671 2.96965 3.18644 3.94526 4.12374 4.18571 4.36247 4.58203 4.69072 4.77484 4.78280 4.93575 4.94316 5.09740 5.30447 5.33630 5.35314 5.46086 5.56358 5.94660 6.54666 6.79158 7.03471 7.07568 7.30947 8.77169 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.038668 B = 0.007400 C = 0.006972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.934454 B = 3783.024827 C = 4014.835124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.023 4.023 3 C -0.139 4.139 4 C 0.043 3.957 5 N -0.511 5.511 6 C 0.088 3.912 7 C 0.280 3.720 8 H 0.008 0.992 9 N -0.837 5.837 10 C -0.559 4.559 11 H 0.041 0.959 12 C 0.024 3.976 13 N -0.915 5.915 14 Si 0.965 3.035 15 H -0.278 1.278 16 H -0.273 1.273 17 H -0.271 1.271 18 C -0.268 4.268 19 S 0.143 5.857 20 H 0.067 0.933 21 H 0.096 0.904 22 H 0.044 0.956 23 H 0.088 0.912 24 H 0.067 0.933 25 H 0.047 0.953 26 H 0.095 0.905 27 H 0.321 0.679 28 H 0.350 0.650 29 H 0.271 0.729 30 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.738 13.017 -1.689 15.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.045 4.045 3 C -0.197 4.197 4 C -0.235 4.235 5 N -0.227 5.227 6 C -0.043 4.043 7 C 0.167 3.833 8 H 0.026 0.974 9 N -0.367 5.367 10 C -0.599 4.599 11 H 0.059 0.941 12 C -0.177 4.177 13 N -0.554 5.554 14 Si 0.789 3.211 15 H -0.204 1.204 16 H -0.198 1.198 17 H -0.196 1.196 18 C -0.407 4.407 19 S 0.396 5.604 20 H 0.086 0.914 21 H 0.115 0.885 22 H 0.063 0.937 23 H 0.106 0.894 24 H 0.086 0.914 25 H 0.066 0.934 26 H 0.114 0.886 27 H 0.131 0.869 28 H 0.166 0.834 29 H 0.080 0.920 30 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -8.710 14.126 -2.068 16.724 hybrid contribution 0.052 -2.977 0.500 3.019 sum -8.658 11.149 -1.568 14.203 Atomic orbital electron populations 1.21902 0.91581 1.02204 1.04151 1.20016 0.97320 0.96147 0.91061 1.21893 1.01021 0.92664 1.04122 1.27776 0.99183 0.95962 1.00618 1.66048 1.15068 1.11600 1.29940 1.20527 0.99114 0.97999 0.86611 1.17186 0.88777 0.86337 0.90981 0.97419 1.59378 1.22470 1.49891 1.04991 1.21866 0.93062 0.93222 1.51714 0.94060 1.25760 0.96500 1.01562 0.93861 1.69835 1.10311 1.25315 1.49909 0.85465 0.78759 0.78636 0.78209 1.20358 1.19798 1.19579 1.26753 1.07701 1.01802 1.04397 1.82903 1.48537 1.28256 1.00668 0.91423 0.88530 0.93681 0.89359 0.91425 0.93351 0.88606 0.86893 0.83429 0.91985 0.80562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.09 71.98 0.65 -2.14 16 2 C -0.02 -0.59 3.35 -11.54 -0.04 -0.63 16 3 C -0.14 -2.67 9.09 71.98 0.65 -2.02 16 4 C 0.04 1.51 6.03 88.52 0.53 2.04 16 5 N -0.51 -23.46 10.53 -179.40 -1.89 -25.35 16 6 C 0.09 4.23 5.77 41.52 0.24 4.47 16 7 C 0.28 15.41 3.19 43.42 0.14 15.55 16 8 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 9 N -0.84 -42.07 8.99 -174.96 -1.57 -43.64 16 10 C -0.56 -32.09 8.71 25.60 0.22 -31.87 16 11 H 0.04 2.42 7.74 -2.91 -0.02 2.39 16 12 C 0.02 1.32 5.38 84.65 0.46 1.78 16 13 N -0.91 -52.05 11.54 21.45 0.25 -51.80 16 14 Si 0.96 44.00 29.54 68.60 2.03 46.03 16 15 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 18 C -0.27 -10.84 10.52 66.78 0.70 -10.13 16 19 S 0.14 4.40 22.53 -56.49 -1.27 3.12 16 20 H 0.07 1.22 7.92 -2.39 -0.02 1.20 16 21 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 22 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 24 H 0.07 1.17 7.94 -2.39 -0.02 1.16 16 25 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 26 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.32 14.84 7.68 -89.69 -0.69 14.15 16 28 H 0.35 18.65 7.08 -89.69 -0.63 18.02 16 29 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 30 H 0.18 6.61 7.12 -2.91 -0.02 6.59 16 Total: -1.00 -65.25 268.22 0.93 -64.32 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: -0.17 Total: 30.27 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: 3.56 Total: -22.94 kcal Atomic # 7 Polarization: -117.58 SS G_CDS: -3.21 Total: -120.79 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: 4.40 SS G_CDS: -1.27 Total: 3.12 kcal Total: -65.25 0.93 -64.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259755407.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.379 kcal (2) G-P(sol) polarization free energy of solvation -65.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds