Wall clock time and date at job start Mon Mar 30 2020 03:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46904 * 110.99987 * 2 1 4 4 C 1.46896 * 111.00218 * 123.95548 * 2 1 3 5 5 H 1.08999 * 109.47198 * 53.44190 * 4 2 1 6 6 C 1.50708 * 109.46940 * 293.44181 * 4 2 1 7 7 H 1.07991 * 119.99778 * 334.75890 * 6 4 2 8 8 C 1.37875 * 119.99648 * 154.75671 * 6 4 2 9 9 N 1.31515 * 120.00352 * 6.35565 * 8 6 4 10 10 Si 1.86804 * 119.99711 * 186.35250 * 8 6 4 11 11 H 1.48503 * 109.47034 * 270.00463 * 10 8 6 12 12 H 1.48501 * 109.47074 * 30.00046 * 10 8 6 13 13 H 1.48498 * 109.47419 * 150.00488 * 10 8 6 14 14 C 1.53001 * 109.47593 * 173.44622 * 4 2 1 15 15 C 1.50707 * 109.46560 * 294.99988 * 14 4 2 16 16 C 1.33639 * 126.03997 * 89.71707 * 15 14 4 17 17 N 1.31784 * 114.49673 * 179.78410 * 16 15 14 18 18 C 1.29022 * 117.12689 * 0.52241 * 17 16 15 19 19 S 1.70984 * 110.16699 * 359.71223 * 18 17 16 20 20 H 1.09003 * 109.47577 * 301.39858 * 1 2 3 21 21 H 1.08999 * 109.47227 * 61.40578 * 1 2 3 22 22 H 1.09007 * 109.47030 * 181.39914 * 1 2 3 23 23 H 1.08996 * 109.46847 * 183.95382 * 3 2 1 24 24 H 1.08997 * 109.46591 * 303.95348 * 3 2 1 25 25 H 1.08998 * 109.47019 * 63.95532 * 3 2 1 26 26 H 0.96996 * 119.99972 * 355.08062 * 9 8 6 27 27 H 1.09005 * 109.47117 * 54.99231 * 14 4 2 28 28 H 1.08994 * 109.47471 * 175.00045 * 14 4 2 29 29 H 1.07995 * 122.74642 * 359.97375 * 16 15 14 30 30 H 1.08002 * 124.91714 * 179.74877 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1375 5 1 1.5542 -1.7627 1.1398 6 6 1.6477 -0.0597 2.4227 7 1 1.4742 1.0061 2.4232 8 6 1.5512 -0.7745 3.5977 9 7 1.8834 -2.0468 3.6227 10 14 0.9486 0.0642 5.1543 11 1 2.1059 0.6367 5.8879 12 1 0.0026 1.1515 4.7962 13 1 0.2583 -0.9287 6.0162 14 6 3.5161 -0.8817 1.0146 15 6 3.8608 -1.6942 -0.2070 16 6 4.0560 -1.2165 -1.4397 17 7 4.3520 -2.1321 -2.3401 18 6 4.4071 -3.3567 -1.9377 19 16 4.0702 -3.4428 -0.2635 20 1 -0.3634 0.5354 0.8772 21 1 -0.3633 0.4918 -0.9023 22 1 -0.3633 -1.0274 0.0251 23 1 3.0827 1.3432 -0.0709 24 1 1.5897 1.9163 -0.8524 25 1 1.7043 1.8723 0.9233 26 1 2.1279 -2.5004 2.8010 27 1 3.9500 0.1141 0.9229 28 1 3.9161 -1.3721 1.9019 29 1 3.9806 -0.1658 -1.6778 30 1 4.6339 -4.2046 -2.5670 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259820004.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:30 Heat of formation + Delta-G solvation = 44.435147 kcal Electronic energy + Delta-G solvation = -13903.123376 eV Core-core repulsion = 11632.286366 eV Total energy + Delta-G solvation = -2270.837010 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.09067 -37.18045 -32.92864 -31.73137 -27.90529 -26.72913 -25.45193 -23.88138 -22.90801 -20.02721 -19.36145 -17.33916 -16.83451 -15.36693 -14.73615 -14.06203 -13.86670 -13.84598 -13.56839 -13.29970 -12.60259 -12.11232 -11.78956 -11.43819 -11.18740 -10.98782 -10.87998 -10.54865 -10.44577 -10.21175 -9.98474 -9.22320 -9.11571 -8.71872 -8.56305 -8.18578 -7.13345 -6.50266 -4.27275 1.31975 1.93122 2.33781 3.33440 3.36593 3.43374 3.52119 4.39479 4.82664 5.06645 5.22815 5.71106 5.78414 5.94640 6.02047 6.11848 6.25813 6.41140 6.50553 6.61396 6.65415 6.72311 6.72837 7.01997 7.08956 7.79341 8.00713 8.16174 8.22275 8.38693 8.66864 9.46379 10.84684 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.031851 B = 0.009647 C = 0.008103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.878945 B = 2901.661353 C = 3454.553097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.540 5.540 3 C 0.028 3.972 4 C 0.203 3.797 5 H 0.042 0.958 6 C -0.624 4.624 7 H 0.057 0.943 8 C 0.028 3.972 9 N -0.902 5.902 10 Si 1.066 2.934 11 H -0.287 1.287 12 H -0.289 1.289 13 H -0.283 1.283 14 C -0.039 4.039 15 C -0.156 4.156 16 C 0.014 3.986 17 N -0.469 5.469 18 C -0.018 4.018 19 S 0.095 5.905 20 H 0.031 0.969 21 H 0.043 0.957 22 H 0.051 0.949 23 H 0.055 0.945 24 H 0.043 0.957 25 H 0.034 0.966 26 H 0.271 0.729 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.168 0.832 30 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.486 0.154 -6.037 6.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.264 5.264 3 C -0.121 4.121 4 C 0.095 3.905 5 H 0.060 0.940 6 C -0.663 4.663 7 H 0.075 0.925 8 C -0.179 4.179 9 N -0.537 5.537 10 Si 0.894 3.106 11 H -0.214 1.214 12 H -0.215 1.215 13 H -0.209 1.209 14 C -0.080 4.080 15 C -0.277 4.277 16 C -0.135 4.135 17 N -0.183 5.183 18 C -0.315 4.315 19 S 0.346 5.654 20 H 0.050 0.950 21 H 0.062 0.938 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.185 0.815 30 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 2.450 -1.052 -4.766 5.461 hybrid contribution -0.097 1.464 -1.131 1.853 sum 2.353 0.412 -5.897 6.362 Atomic orbital electron populations 1.22045 0.89045 1.00727 0.98931 1.62472 1.06910 1.12650 1.44327 1.22253 0.99633 0.90801 0.99382 1.19401 0.88728 0.94692 0.87659 0.93981 1.22478 1.52533 0.96476 0.94763 0.92461 1.25796 0.93882 0.96066 1.02111 1.70789 1.41066 1.10731 1.31080 0.83577 0.76659 0.75107 0.75228 1.21364 1.21527 1.20861 1.20658 1.00038 0.96790 0.90534 1.26452 1.04625 0.94905 1.01682 1.21486 1.04534 0.99943 0.87549 1.66233 1.14898 1.00203 1.36927 1.28024 1.07869 0.98177 0.97479 1.84100 1.64983 1.07319 1.09017 0.95012 0.93806 0.92979 0.92597 0.93838 0.94730 0.91701 0.90897 0.90755 0.81519 0.79549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 9.30 60.06 0.56 1.38 16 2 N -0.54 -11.30 4.60 -244.58 -1.13 -12.42 16 3 C 0.03 0.53 8.95 60.07 0.54 1.07 16 4 C 0.20 4.73 1.34 -68.86 -0.09 4.64 16 5 H 0.04 1.10 6.88 -51.93 -0.36 0.75 16 6 C -0.62 -15.97 6.96 -34.44 -0.24 -16.21 16 7 H 0.06 1.49 5.88 -52.49 -0.31 1.18 16 8 C 0.03 0.74 5.45 -17.82 -0.10 0.65 16 9 N -0.90 -25.37 13.62 55.43 0.75 -24.61 16 10 Si 1.07 23.97 29.91 -169.99 -5.08 18.88 16 11 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 C -0.04 -0.84 4.94 -27.88 -0.14 -0.97 16 15 C -0.16 -3.01 5.61 -35.92 -0.20 -3.21 16 16 C 0.01 0.25 11.13 -19.18 -0.21 0.04 16 17 N -0.47 -8.51 10.54 -15.75 -0.17 -8.68 16 18 C -0.02 -0.29 12.23 51.58 0.63 0.34 16 19 S 0.10 1.63 23.22 -107.50 -2.50 -0.87 16 20 H 0.03 0.66 7.48 -51.93 -0.39 0.28 16 21 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 22 H 0.05 1.05 8.07 -51.93 -0.42 0.63 16 23 H 0.06 1.00 6.19 -51.93 -0.32 0.68 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.03 0.70 6.04 -51.93 -0.31 0.38 16 26 H 0.27 7.59 6.38 -40.82 -0.26 7.33 16 27 H 0.07 1.50 6.22 -51.93 -0.32 1.18 16 28 H 0.07 1.73 7.81 -51.93 -0.41 1.32 16 29 H 0.17 2.95 7.98 -52.49 -0.42 2.53 16 30 H 0.19 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 262.39 15.07 3.95 3.95 Total: -1.00 -28.10 262.39 -7.00 -35.10 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -3.58 Total: 0.93 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 0.74 Total: -12.28 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: -0.54 Total: -45.72 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -5.08 Total: 18.88 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.50 Total: -0.87 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.10 -7.00 -35.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259820004.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.535 kcal (2) G-P(sol) polarization free energy of solvation -28.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds