Wall clock time and date at job start Mon Mar 30 2020 03:03:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46893 * 1
3 3 C 1.46904 * 110.99987 * 2 1
4 4 C 1.46896 * 111.00218 * 123.95548 * 2 1 3
5 5 H 1.08999 * 109.47198 * 53.44190 * 4 2 1
6 6 C 1.50708 * 109.46940 * 293.44181 * 4 2 1
7 7 H 1.07991 * 119.99778 * 334.75890 * 6 4 2
8 8 C 1.37875 * 119.99648 * 154.75671 * 6 4 2
9 9 N 1.31515 * 120.00352 * 6.35565 * 8 6 4
10 10 Si 1.86804 * 119.99711 * 186.35250 * 8 6 4
11 11 H 1.48503 * 109.47034 * 270.00463 * 10 8 6
12 12 H 1.48501 * 109.47074 * 30.00046 * 10 8 6
13 13 H 1.48498 * 109.47419 * 150.00488 * 10 8 6
14 14 C 1.53001 * 109.47593 * 173.44622 * 4 2 1
15 15 C 1.50707 * 109.46560 * 294.99988 * 14 4 2
16 16 C 1.33639 * 126.03997 * 89.71707 * 15 14 4
17 17 N 1.31784 * 114.49673 * 179.78410 * 16 15 14
18 18 C 1.29022 * 117.12689 * 0.52241 * 17 16 15
19 19 S 1.70984 * 110.16699 * 359.71223 * 18 17 16
20 20 H 1.09003 * 109.47577 * 301.39858 * 1 2 3
21 21 H 1.08999 * 109.47227 * 61.40578 * 1 2 3
22 22 H 1.09007 * 109.47030 * 181.39914 * 1 2 3
23 23 H 1.08996 * 109.46847 * 183.95382 * 3 2 1
24 24 H 1.08997 * 109.46591 * 303.95348 * 3 2 1
25 25 H 1.08998 * 109.47019 * 63.95532 * 3 2 1
26 26 H 0.96996 * 119.99972 * 355.08062 * 9 8 6
27 27 H 1.09005 * 109.47117 * 54.99231 * 14 4 2
28 28 H 1.08994 * 109.47471 * 175.00045 * 14 4 2
29 29 H 1.07995 * 122.74642 * 359.97375 * 16 15 14
30 30 H 1.08002 * 124.91714 * 179.74877 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4689 0.0000 0.0000
3 6 1.9954 1.3715 0.0000
4 6 1.9954 -0.7660 1.1375
5 1 1.5542 -1.7627 1.1398
6 6 1.6477 -0.0597 2.4227
7 1 1.4742 1.0061 2.4232
8 6 1.5512 -0.7745 3.5977
9 7 1.8834 -2.0468 3.6227
10 14 0.9486 0.0642 5.1543
11 1 2.1059 0.6367 5.8879
12 1 0.0026 1.1515 4.7962
13 1 0.2583 -0.9287 6.0162
14 6 3.5161 -0.8817 1.0146
15 6 3.8608 -1.6942 -0.2070
16 6 4.0560 -1.2165 -1.4397
17 7 4.3520 -2.1321 -2.3401
18 6 4.4071 -3.3567 -1.9377
19 16 4.0702 -3.4428 -0.2635
20 1 -0.3634 0.5354 0.8772
21 1 -0.3633 0.4918 -0.9023
22 1 -0.3633 -1.0274 0.0251
23 1 3.0827 1.3432 -0.0709
24 1 1.5897 1.9163 -0.8524
25 1 1.7043 1.8723 0.9233
26 1 2.1279 -2.5004 2.8010
27 1 3.9500 0.1141 0.9229
28 1 3.9161 -1.3721 1.9019
29 1 3.9806 -0.1658 -1.6778
30 1 4.6339 -4.2046 -2.5670
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259820004.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:03:30
Heat of formation + Delta-G solvation = 44.435147 kcal
Electronic energy + Delta-G solvation = -13903.123376 eV
Core-core repulsion = 11632.286366 eV
Total energy + Delta-G solvation = -2270.837010 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 226.083 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-39.09067 -37.18045 -32.92864 -31.73137 -27.90529 -26.72913 -25.45193 -23.88138
-22.90801 -20.02721 -19.36145 -17.33916 -16.83451 -15.36693 -14.73615 -14.06203
-13.86670 -13.84598 -13.56839 -13.29970 -12.60259 -12.11232 -11.78956 -11.43819
-11.18740 -10.98782 -10.87998 -10.54865 -10.44577 -10.21175 -9.98474 -9.22320
-9.11571 -8.71872 -8.56305 -8.18578 -7.13345 -6.50266 -4.27275 1.31975
1.93122 2.33781 3.33440 3.36593 3.43374 3.52119 4.39479 4.82664
5.06645 5.22815 5.71106 5.78414 5.94640 6.02047 6.11848 6.25813
6.41140 6.50553 6.61396 6.65415 6.72311 6.72837 7.01997 7.08956
7.79341 8.00713 8.16174 8.22275 8.38693 8.66864 9.46379 10.84684
Molecular weight = 226.08amu
Principal moments of inertia in cm(-1)
A = 0.031851 B = 0.009647 C = 0.008103
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 878.878945 B = 2901.661353 C = 3454.553097
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.041 3.959
2 N -0.540 5.540
3 C 0.028 3.972
4 C 0.203 3.797
5 H 0.042 0.958
6 C -0.624 4.624
7 H 0.057 0.943
8 C 0.028 3.972
9 N -0.902 5.902
10 Si 1.066 2.934
11 H -0.287 1.287
12 H -0.289 1.289
13 H -0.283 1.283
14 C -0.039 4.039
15 C -0.156 4.156
16 C 0.014 3.986
17 N -0.469 5.469
18 C -0.018 4.018
19 S 0.095 5.905
20 H 0.031 0.969
21 H 0.043 0.957
22 H 0.051 0.949
23 H 0.055 0.945
24 H 0.043 0.957
25 H 0.034 0.966
26 H 0.271 0.729
27 H 0.073 0.927
28 H 0.074 0.926
29 H 0.168 0.832
30 H 0.188 0.812
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.486 0.154 -6.037 6.531
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.107 4.107
2 N -0.264 5.264
3 C -0.121 4.121
4 C 0.095 3.905
5 H 0.060 0.940
6 C -0.663 4.663
7 H 0.075 0.925
8 C -0.179 4.179
9 N -0.537 5.537
10 Si 0.894 3.106
11 H -0.214 1.214
12 H -0.215 1.215
13 H -0.209 1.209
14 C -0.080 4.080
15 C -0.277 4.277
16 C -0.135 4.135
17 N -0.183 5.183
18 C -0.315 4.315
19 S 0.346 5.654
20 H 0.050 0.950
21 H 0.062 0.938
22 H 0.070 0.930
23 H 0.074 0.926
24 H 0.062 0.938
25 H 0.053 0.947
26 H 0.083 0.917
27 H 0.091 0.909
28 H 0.092 0.908
29 H 0.185 0.815
30 H 0.205 0.795
Dipole moment (debyes) X Y Z Total
from point charges 2.450 -1.052 -4.766 5.461
hybrid contribution -0.097 1.464 -1.131 1.853
sum 2.353 0.412 -5.897 6.362
Atomic orbital electron populations
1.22045 0.89045 1.00727 0.98931 1.62472 1.06910 1.12650 1.44327
1.22253 0.99633 0.90801 0.99382 1.19401 0.88728 0.94692 0.87659
0.93981 1.22478 1.52533 0.96476 0.94763 0.92461 1.25796 0.93882
0.96066 1.02111 1.70789 1.41066 1.10731 1.31080 0.83577 0.76659
0.75107 0.75228 1.21364 1.21527 1.20861 1.20658 1.00038 0.96790
0.90534 1.26452 1.04625 0.94905 1.01682 1.21486 1.04534 0.99943
0.87549 1.66233 1.14898 1.00203 1.36927 1.28024 1.07869 0.98177
0.97479 1.84100 1.64983 1.07319 1.09017 0.95012 0.93806 0.92979
0.92597 0.93838 0.94730 0.91701 0.90897 0.90755 0.81519 0.79549
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.82 9.30 60.06 0.56 1.38 16
2 N -0.54 -11.30 4.60 -244.58 -1.13 -12.42 16
3 C 0.03 0.53 8.95 60.07 0.54 1.07 16
4 C 0.20 4.73 1.34 -68.86 -0.09 4.64 16
5 H 0.04 1.10 6.88 -51.93 -0.36 0.75 16
6 C -0.62 -15.97 6.96 -34.44 -0.24 -16.21 16
7 H 0.06 1.49 5.88 -52.49 -0.31 1.18 16
8 C 0.03 0.74 5.45 -17.82 -0.10 0.65 16
9 N -0.90 -25.37 13.62 55.43 0.75 -24.61 16
10 Si 1.07 23.97 29.91 -169.99 -5.08 18.88 16
11 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16
12 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16
13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
14 C -0.04 -0.84 4.94 -27.88 -0.14 -0.97 16
15 C -0.16 -3.01 5.61 -35.92 -0.20 -3.21 16
16 C 0.01 0.25 11.13 -19.18 -0.21 0.04 16
17 N -0.47 -8.51 10.54 -15.75 -0.17 -8.68 16
18 C -0.02 -0.29 12.23 51.58 0.63 0.34 16
19 S 0.10 1.63 23.22 -107.50 -2.50 -0.87 16
20 H 0.03 0.66 7.48 -51.93 -0.39 0.28 16
21 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16
22 H 0.05 1.05 8.07 -51.93 -0.42 0.63 16
23 H 0.06 1.00 6.19 -51.93 -0.32 0.68 16
24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16
25 H 0.03 0.70 6.04 -51.93 -0.31 0.38 16
26 H 0.27 7.59 6.38 -40.82 -0.26 7.33 16
27 H 0.07 1.50 6.22 -51.93 -0.32 1.18 16
28 H 0.07 1.73 7.81 -51.93 -0.41 1.32 16
29 H 0.17 2.95 7.98 -52.49 -0.42 2.53 16
30 H 0.19 2.21 8.06 -52.49 -0.42 1.79 16
LS Contribution 262.39 15.07 3.95 3.95
Total: -1.00 -28.10 262.39 -7.00 -35.10
By element:
Atomic # 1 Polarization: 4.51 SS G_CDS: -3.58 Total: 0.93 kcal
Atomic # 6 Polarization: -13.03 SS G_CDS: 0.74 Total: -12.28 kcal
Atomic # 7 Polarization: -45.18 SS G_CDS: -0.54 Total: -45.72 kcal
Atomic # 14 Polarization: 23.97 SS G_CDS: -5.08 Total: 18.88 kcal
Atomic # 16 Polarization: 1.63 SS G_CDS: -2.50 Total: -0.87 kcal
Total LS contribution 3.95 Total: 3.95 kcal
Total: -28.10 -7.00 -35.10 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259820004.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.535 kcal
(2) G-P(sol) polarization free energy of solvation -28.101 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.434 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.998 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.100 kcal
(6) G-S(sol) free energy of system = (1) + (5) 44.435 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds