Wall clock time and date at job start Mon Mar 30 2020 03:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46894 * 111.00044 * 2 1 4 4 C 1.46902 * 111.00055 * 123.95532 * 2 1 3 5 5 H 1.08998 * 109.47206 * 189.22608 * 4 2 1 6 6 C 1.50698 * 109.46862 * 309.22641 * 4 2 1 7 7 H 1.08001 * 120.00588 * 57.64190 * 6 4 2 8 8 C 1.37883 * 119.99812 * 237.64631 * 6 4 2 9 9 N 1.31514 * 119.99740 * 5.46378 * 8 6 4 10 10 Si 1.86796 * 120.00173 * 185.46549 * 8 6 4 11 11 H 1.48500 * 109.47082 * 59.99766 * 10 8 6 12 12 H 1.48502 * 109.47162 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47288 * 299.99926 * 10 8 6 14 14 C 1.53004 * 109.47130 * 69.22188 * 4 2 1 15 15 C 1.50699 * 109.46982 * 65.00387 * 14 4 2 16 16 C 1.33639 * 126.04014 * 89.71319 * 15 14 4 17 17 N 1.31782 * 114.49795 * 179.78410 * 16 15 14 18 18 C 1.29024 * 117.12739 * 0.52813 * 17 16 15 19 19 S 1.70980 * 110.16702 * 359.70711 * 18 17 16 20 20 H 1.09000 * 109.47442 * 299.99910 * 1 2 3 21 21 H 1.09004 * 109.47217 * 60.00302 * 1 2 3 22 22 H 1.09006 * 109.46946 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.46979 * 181.34246 * 3 2 1 24 24 H 1.09004 * 109.46969 * 301.33602 * 3 2 1 25 25 H 1.08993 * 109.47246 * 61.33802 * 3 2 1 26 26 H 0.97003 * 119.99627 * 180.02562 * 9 8 6 27 27 H 1.08997 * 109.46863 * 185.00002 * 14 4 2 28 28 H 1.09003 * 109.47434 * 305.00022 * 14 4 2 29 29 H 1.07997 * 122.74647 * 359.97438 * 16 15 14 30 30 H 1.08001 * 124.91531 * 179.75061 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 1 3.0726 -0.6158 1.2094 6 6 1.3366 -0.2948 2.4084 7 1 0.2615 -0.3307 2.5048 8 6 2.1064 0.1822 3.4481 9 7 3.4043 0.3271 3.2927 10 14 1.3060 0.6227 5.0773 11 1 0.6428 -0.5791 5.6440 12 1 2.3429 1.1076 6.0233 13 1 0.2958 1.6893 4.8602 14 6 1.7005 -2.2531 0.9313 15 6 2.4585 -2.7535 -0.2712 16 6 3.6937 -3.2637 -0.2656 17 7 4.1366 -3.6357 -1.4497 18 6 3.3479 -3.4582 -2.4553 19 16 1.8757 -2.7622 -1.9340 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.0847 1.3424 -0.0241 24 1 1.6267 1.9021 -0.8778 25 1 1.6655 1.8872 0.9017 26 1 3.9459 0.6623 4.0242 27 1 2.0112 -2.8110 1.8146 28 1 0.6314 -2.3927 0.7709 29 1 4.2796 -3.3656 0.6359 30 1 3.5832 -3.7130 -3.4780 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259820005.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:32 Heat of formation + Delta-G solvation = 45.867692 kcal Electronic energy + Delta-G solvation = -13832.821752 eV Core-core repulsion = 11562.046861 eV Total energy + Delta-G solvation = -2270.774890 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.97646 -36.88918 -32.51273 -31.90842 -28.08283 -26.50204 -25.64267 -23.91743 -22.71834 -19.90002 -18.98354 -17.31666 -16.48091 -15.13856 -14.74336 -14.12484 -13.96006 -13.49135 -13.36163 -13.31169 -12.63388 -11.99638 -11.66629 -11.47841 -11.03161 -10.86924 -10.75757 -10.67807 -10.39395 -10.17111 -9.90005 -9.25755 -9.02177 -8.76328 -8.50663 -8.17241 -7.07664 -6.13783 -4.26519 1.39566 2.03040 2.43754 3.20835 3.27282 3.29294 3.47640 4.29483 4.89439 5.04453 5.42458 5.78177 5.86425 5.98667 6.16323 6.31341 6.44865 6.61850 6.67740 6.68246 6.79380 6.86471 7.02302 7.12672 7.49624 7.71419 8.07821 8.23784 8.29273 8.47671 8.90674 9.41768 10.87266 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.036491 B = 0.008853 C = 0.008039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.119617 B = 3161.935165 C = 3482.023807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.546 5.546 3 C 0.048 3.952 4 C 0.195 3.805 5 H 0.083 0.917 6 C -0.545 4.545 7 H 0.057 0.943 8 C 0.076 3.924 9 N -0.883 5.883 10 Si 0.889 3.111 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.277 1.277 14 C -0.035 4.035 15 C -0.148 4.148 16 C -0.007 4.007 17 N -0.469 5.469 18 C -0.027 4.027 19 S 0.121 5.879 20 H 0.032 0.968 21 H 0.038 0.962 22 H 0.049 0.951 23 H 0.053 0.947 24 H 0.036 0.964 25 H 0.030 0.970 26 H 0.265 0.735 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.169 0.831 30 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.324 -3.693 -7.373 8.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.269 5.269 3 C -0.101 4.101 4 C 0.089 3.911 5 H 0.101 0.899 6 C -0.584 4.584 7 H 0.075 0.925 8 C -0.129 4.129 9 N -0.520 5.520 10 Si 0.716 3.284 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.203 1.203 14 C -0.076 4.076 15 C -0.269 4.269 16 C -0.156 4.156 17 N -0.183 5.183 18 C -0.324 4.324 19 S 0.372 5.628 20 H 0.051 0.949 21 H 0.057 0.943 22 H 0.068 0.932 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.075 0.925 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.186 0.814 30 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -3.318 -3.831 -8.361 9.777 hybrid contribution -0.073 0.644 2.438 2.522 sum -3.392 -3.187 -5.923 7.533 Atomic orbital electron populations 1.22137 0.90478 1.00077 0.98933 1.62581 1.06138 1.13070 1.45149 1.21938 0.99488 0.90145 0.98497 1.19577 0.99020 0.86246 0.86300 0.89925 1.21507 0.93537 1.43192 1.00211 0.92508 1.25008 0.94824 0.94317 0.98716 1.69880 1.04826 1.44780 1.32486 0.86710 0.79144 0.78908 0.83593 1.20048 1.21174 1.20271 1.20568 0.97200 0.99344 0.90478 1.26361 0.99093 1.02927 0.98510 1.21619 0.94364 1.03922 0.95695 1.66218 1.34489 1.18590 0.98990 1.28030 0.95714 1.06281 1.02419 1.83801 1.19624 1.56916 1.02486 0.94948 0.94280 0.93241 0.92859 0.94494 0.95148 0.92484 0.90259 0.92170 0.81384 0.79758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 8.81 60.06 0.53 1.16 16 2 N -0.55 -11.56 4.66 -244.59 -1.14 -12.70 16 3 C 0.05 1.02 9.38 60.06 0.56 1.58 16 4 C 0.20 4.55 2.01 -68.86 -0.14 4.41 16 5 H 0.08 2.22 6.75 -51.93 -0.35 1.87 16 6 C -0.55 -13.79 6.64 -34.44 -0.23 -14.02 16 7 H 0.06 1.44 6.60 -52.49 -0.35 1.09 16 8 C 0.08 1.98 5.45 -17.82 -0.10 1.89 16 9 N -0.88 -24.12 12.62 55.43 0.70 -23.42 16 10 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 14 C -0.03 -0.72 5.18 -27.88 -0.14 -0.86 16 15 C -0.15 -2.79 5.58 -35.92 -0.20 -3.00 16 16 C -0.01 -0.13 11.25 -19.18 -0.22 -0.35 16 17 N -0.47 -8.66 10.54 -15.75 -0.17 -8.83 16 18 C -0.03 -0.43 12.23 51.58 0.63 0.20 16 19 S 0.12 1.93 23.22 -107.50 -2.50 -0.57 16 20 H 0.03 0.67 6.49 -51.93 -0.34 0.33 16 21 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 22 H 0.05 0.91 6.35 -51.93 -0.33 0.58 16 23 H 0.05 1.17 8.05 -51.93 -0.42 0.75 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.03 0.70 7.61 -51.93 -0.40 0.30 16 26 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 28 H 0.06 1.18 6.39 -51.93 -0.33 0.85 16 29 H 0.17 3.11 8.06 -52.49 -0.42 2.69 16 30 H 0.19 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 265.53 15.07 4.00 4.00 Total: -1.00 -27.35 265.53 -7.18 -34.54 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -3.76 Total: 0.63 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: 0.70 Total: -8.98 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: -0.61 Total: -44.95 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.50 Total: -0.57 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -27.35 -7.18 -34.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259820005.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.403 kcal (2) G-P(sol) polarization free energy of solvation -27.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds